BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G38020.1
Length=1446
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494176 jgi|Araly1|494176|fgenesh2_kg.7__3609__AT5G38020.1 1753 0.0
Ahg948089 jgi|Araly1|948089|scaffold_704318.1 507 1e-142
> Ahg494176 jgi|Araly1|494176|fgenesh2_kg.7__3609__AT5G38020.1
Length=1138
Score = 1753 bits (949), Expect = 0.0
Identities = 1079/1142 (94%), Gaps = 8/1142 (1%)
Strand=Plus/Plus
Query 36 AACATGGGTGTTCTAAGCATG-AAGGGAGGAGATGGAGAACACAGTTATGCTAATAATTC 94
|||||||| ||||| |||||| ||||| ||||||||||||||||||||||| ||||| ||
Sbjct 1 AACATGGGGGTTCTTAGCATGAAAGGG-GGAGATGGAGAACACAGTTATGCCAATAACTC 59
Query 95 CGAGGGACAGAAACGTCTTGCTTCTGATGCAAAACCGGTGGTGGTAGAAACCGTAAAAGA 154
|||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 60 CGAGGGGCAGAAACGTCTTGCTTCTGATGCAAAACCGGTGGTGGTAGAAACCGTGAAAGA 119
Query 155 AATGATAGTGAAAACAG-ATTTTCCTGGTTGTATAAAAGTGGCCGACTTAGGATGTTCTT 213
|||||||||||||| | |||||||||||||| |||||||||| ||||||||||||||||
Sbjct 120 AATGATAGTGAAAA-TGAATTTTCCTGGTTGTGTAAAAGTGGCTGACTTAGGATGTTCTT 178
Query 214 CCGGGGAAAACACGTTATTGGTCATGTCCGAAATAGTCAACACGATCATTACATCATACC 273
|||||||||||||||||||||||||||||||||| ||| |||||||||| ||||||||||
Sbjct 179 CCGGGGAAAACACGTTATTGGTCATGTCCGAAATCGTCGACACGATCATAACATCATACC 238
Query 274 AACAAAAAGGCAAAAACTTACCAGAGATCAATTGTTGTTTGAACGATCTCCCAGACAACG 333
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 239 AACAAAAAGGCAAAAACTTACCAGAGATCAATTGTTGTCTGAACGATCTCCCAGACAACG 298
Query 334 ATTTCAACACTACTTTCAAGTTGGTCCCTGCCTTCCACAAGTTGCTGAAGATGGATGTTA 393
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 299 ATTTCAACACTACTTTCAAGTTGGTCCCTGCCTTCCACAAGTTGCTGAAGATGGATGTTA 358
Query 394 AAGGGAAATGCTTCATCTCAGGAGTCCCAGGCTCATTCTACTCAAGACTTTTCCCTAGCA 453
|||| |||||||||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 359 AAGGAAAATGCTTCATCTCAGGAGTCCCAGGCTCATTCTACTCAAGACTATTCCCAAGCA 418
Query 454 AGTCTCTCCATTTTGTTCATTCATCTCTTTGTCTACATTGGCTTTCCAAAGTTCCTGATG 513
||||||| |||||| ||||||||||||||||||| || |||||||||||||||||| | |
Sbjct 419 AGTCTCTTCATTTTTTTCATTCATCTCTTTGTCTCCACTGGCTTTCCAAAGTTCCTAA-G 477
Query 514 GG-CTTGAAGATAACAAGAAGAATGTGTACCTTAGAAGTCCATGCCCTCCAAATGTGTAC 572
|| |||||||||||||||||||| |||||||||||||||||||||| |||||||||||||
Sbjct 478 GGTCTTGAAGATAACAAGAAGAACGTGTACCTTAGAAGTCCATGCCTTCCAAATGTGTAC 537
Query 573 AAGAGTTATTTGACTCAGTTCAAGAATGA-TTTCTCTTTGTTTCTGAGACTGCGTGCGGA 631
||||||||||||| |||||||||| |||| ||| || || ||||| ||| ||||||||||
Sbjct 538 AAGAGTTATTTGAGTCAGTTCAAGCATGACTTT-TCGTTATTTCTAAGAATGCGTGCGGA 596
Query 632 TGAGACTGTGCCAAATGGACGTATGGCTCTTACTTTCGTGGGCAGAAAATCTTTGGATCC 691
|||||||||| ||||||||||||||||||||||||| |||||||||||| ||||||| ||
Sbjct 597 TGAGACTGTGTCAAATGGACGTATGGCTCTTACTTTTGTGGGCAGAAAAGCTTTGGACCC 656
Query 692 TTTATCTAAAGATTGTTTCCAAAATTGGTCGTCGATATCTGATTCCCTCCTCGACTTGGT 751
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 657 TTTATCTCAAGATTGTTTCCAAAATTGGTCGTCGATATCTGATTCCCTCCTCGACTTGGT 716
Query 752 TTCTGAGGGTATTGTGAAGGAATCGGATGTAGATTCTTTTAACTTGCCATTCTACAATCC 811
|||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||
Sbjct 717 TTCTGAGGGTATTGTGAAGGAATCAGATGTAGCTTCTTTTAACTTGCCATTCTACAATCC 776
Query 812 TGACGAGAGTGAGGTGAGGGAAGTTATCGAAAGCGAGGGCTCGTTCAAAATCAGCAATTT 871
|||||| ||||||||||||||||| ||||||||||||||||| ||| |||||| |||||
Sbjct 777 TGACGAAAGTGAGGTGAGGGAAGTAATCGAAAGCGAGGGCTCTTTCGAAATCAATAATTT 836
Query 872 TGAGACAATCTTTGGTCTTCTCTTTTCATACAAAACTGGTCGTACTGAAGTGAAAGATGA 931
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 837 CGAGACAATCTTTGGTCTTCTCTTTTCATACAAAACTGGTCGTACCGAAGTGAAAGATGA 896
Query 932 TGATGATAATTTGGACCAATCATGTCGATTTGAAGTCATTCGAAAGAGGGCAAGCATCAT 991
|||| ||||||||||||||||||| | ||||||||||||| |||||||| ||||||||||
Sbjct 897 TGATAATAATTTGGACCAATCATGCCAATTTGAAGTCATTAGAAAGAGGACAAGCATCAT 956
Query 992 AAGATCCATTACTGAACCAATGCTTGGTGCTCATTTTGGAGACGCCATTATGGATCGTCT 1051
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 957 AAGATCCATTACTGAACCAATGCTTGCTGCTCATTTTGGAGACGCCATTATGGATCGTCT 1016
Query 1052 GTTCGAGAGGTATACATACCATCTTGCCGAGCGTTACGATACTTTGCGCAACAAACCAAC 1111
||| ||||||||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 1017 GTTTGAGAGGTATACATACCATCTTTCCCAGCGTTACGATACTTTGCGCAACAAACCAAC 1076
Query 1112 TGTTCAGTTCTTCGTTTCCTTGACAAGGAAGTAACAAACCTATGAGGAGACAGTAAGTGA 1171
||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||
Sbjct 1077 TGTTCAGTTCTTCGTTTCCTTGACAAGGAAGTAACAAACCTATAAGGAGATAGTAAGTGA 1136
Query 1172 AG 1173
||
Sbjct 1137 AG 1138
> Ahg948089 jgi|Araly1|948089|scaffold_704318.1
Length=829
Score = 507 bits (274), Expect = 1e-142
Identities = 372/419 (89%), Gaps = 7/419 (2%)
Strand=Plus/Plus
Query 39 ATGGGTGTTCTAAGCATGAAGGGAGGAGATGGAGAACACAGTTATGCTAATAATTCCGAG 98
||||||||||| ||||||||||| ||||||||||| ||||||||||| ||||||||||||
Sbjct 21 ATGGGTGTTCTTAGCATGAAGGGTGGAGATGGAGAGCACAGTTATGCAAATAATTCCGAG 80
Query 99 GGACAGAAACGTCTTGCTTCTGATGCAAAACCGGTGGTGGTAGAAACCGTAAAAGAAATG 158
|| |||||| || |||||||| |||||||||||||||||||||||| |||||||||||||
Sbjct 81 GGGCAGAAAAGTGTTGCTTCTAATGCAAAACCGGTGGTGGTAGAAAACGTAAAAGAAATG 140
Query 159 ATAGTGAAAACAGATTTTCCTGGTTGTATAAAAGTGGCCGACTTAGGATGTTCTTCCGGG 218
|||||||||| ||||||||| |||| || ||||||||||| || |||||||| || |||
Sbjct 141 ATAGTGAAAATGGATTTTCCTAGTTGCATCAAAGTGGCCGATTTGGGATGTTCATCGGGG 200
Query 219 GAAAACACGTTATTGGTCATGTCCGAAATAGTCAACACGATCATTA-CATCATACCAACA 277
|||||||| ||| |||||||||||||||| ||||||||||||| || || |||| ||||
Sbjct 201 GAAAACACATTAGTGGTCATGTCCGAAATTGTCAACACGATCA-TAGCAACATATCAAC- 258
Query 278 AAAAG-GCAAAAACTTACCAGAGATCAATTGTTGTTTGAACGATCTCCCAGACAACGATT 336
||||| | |||||| |||||||||| ||||||| |||||||||| ||||||||||| |
Sbjct 259 AAAAGAGTAAAAACCCACCAGAGATCGTTTGTTGTCTGAACGATCTTCCAGACAACGACT 318
Query 337 TCAACACTACTTTCAAGTTGGTCCCTGCCTTCCACAAGTTGCTGAAGATGGATGTTAAAG 396
|||||||||||||||| || ||||||||||||| ||| |||||||||| ||||||||
Sbjct 319 TCAACACTACTTTCAAATTAATCCCTGCCTTCCATAAGAAGCTGAAGATGAATGTTAAA- 377
Query 397 GGAAA-TGCTTCATCTCAGGAGTCCCAGGCTCATTCTACTCAAGACTTTTCCCTA-GCA 453
| ||| ||||||||||||||||||||||||||||||||||||||||| ||||||| |||
Sbjct 378 GAAAAGTGCTTCATCTCAGGAGTCCCAGGCTCATTCTACTCAAGACTCTTCCCTATGCA 436
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54088147900
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5