BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G38030.1 Length=1892 Score E Sequences producing significant alignments: (Bits) Value Ahg494175 jgi|Araly1|494175|fgenesh2_kg.7__3608__AT5G38030.1 2521 0.0 Ahg936365 jgi|Araly1|936365|scaffold_500556.1 1860 0.0 > Ahg494175 jgi|Araly1|494175|fgenesh2_kg.7__3608__AT5G38030.1 Length=1730 Score = 2521 bits (1365), Expect = 0.0 Identities = 1612/1732 (93%), Gaps = 14/1732 (1%) Strand=Plus/Plus Query 53 TTTTCTATATAATTCATGTATGACTAATCCCAAGATGCTCACTCTTTGGTCTTTAGTCTT 112 ||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||| Sbjct 2 TTTTCTATATAATTCATGTGTGACTAATCCCAAGATCCTCACTCTTTGGTCTTTAGTCTT 61 Query 113 TT-ACATGCTTTAATCTTTCCATCTTTGTCTCTATCTCGTGGATATGGAAGAAGACAAAA 171 || |||| ||||||||||||||||| ||||||| |||||| || |||||| ||||||||| Sbjct 62 TTGACATTCTTTAATCTTTCCATCTCTGTCTCTGTCTCGTCGACATGGAAAAAGACAAAA 121 Query 172 TTCTTACGGAGACCCTTCTATCTGCGGCGGAAGAACCACCTGC-TCTTCCTTTCTCATCC 230 ||| ||||||||||||||||||||||||||||||| |||| | |||||||||||||||| Sbjct 122 ATCTAACGGAGACCCTTCTATCTGCGGCGGAAGAACGACCT-CATCTTCCTTTCTCATCC 180 Query 231 GTGGAAGATATTCCTCCGATCACCACCGTTGGTGGCTTCGTCAAGGAGTTCAACGTGGAG 290 || || |||||||||||||||||||||||| |||||||| ||| |||||| ||||||||| Sbjct 181 GTAGATGATATTCCTCCGATCACCACCGTTCGTGGCTTCCTCAGGGAGTTTAACGTGGAG 240 Query 291 GTCAAAAAGCTATGGTACTTGGCAGGGCCAGCCATTTTCATGTC-TATAACCCAATATTC 349 ||||||||||||||||||||||| |||||||| ||||||||||| | |||| || ||||| Sbjct 241 GTCAAAAAGCTATGGTACTTGGCCGGGCCAGCTATTTTCATGTCGT-TAACTCAGTATTC 299 Query 350 TCTCGGCGCTGCTACTCAGGTCTTCGCCGGACACATCAGCACCATCGCTCTCGCAGCGGT 409 |||||||||||||||||||||||||||||||||||||||||| |||||||| || || || Sbjct 300 TCTCGGCGCTGCTACTCAGGTCTTCGCCGGACACATCAGCACTATCGCTCTGGCGGCCGT 359 Query 410 CTCCGTTGAAAACTCGGTCATCGCTGGATTCTCATTTGGTGTCATGCTTGGAATGGGAAG 469 |||||| ||||||||||||||||| || ||||||||||| |||||||||||||||||||| Sbjct 360 CTCCGTCGAAAACTCGGTCATCGCCGGGTTCTCATTTGGCGTCATGCTTGGAATGGGAAG 419 Query 470 CGCGTTAGAAACGCTATGTGGACAAGCGTTTGGAGCAGGGAAATTGTCAATGCTTGGCGT 529 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 420 CGCGTTAGAAACGCTATGTGGACAAGCGTTTGGAGCAGGGAAATTGTCAATGCTTGGCGT 479 Query 530 TTACTTGCAACGATCATGGGTGATACTAAACGTGACCGCGGTTATT-CTCTCGCTTCTTT 588 ||||||||||||||||||||||||||| |||||||||||| || || ||||| || || | Sbjct 480 TTACTTGCAACGATCATGGGTGATACTTAACGTGACCGCGATT-TTACTCTCTCTCCTAT 538 Query 589 ACATCTTCGCCGCTCCAATCCTCGCGTTCATCGGTCAAACGCCGGCGATCTCTAGCGCCA 648 |||| ||||||||||||||||| ||||||||||| || ||||| |||||||||||||||| Sbjct 539 ACATTTTCGCCGCTCCAATCCTGGCGTTCATCGGCCAGACGCCAGCGATCTCTAGCGCCA 598 Query 649 CGGGAATATTTTCCATCTACATGATCCCTCAGATCTTTGCTTACGCTGTTAATTACCCAA 708 | |||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||| Sbjct 599 CAGGAATATTTTCCATCTACATGATCCCACAGATCTTTGCTTACGCCGTTAATTACCCAA 658 Query 709 CGGCTAAGTTCTTGCAATCACAAAGCAAAATCATGGTGATGGCTGCGATATCAGCGGTTG 768 | ||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 659 CCGCTAAATTCTTGCAATCACAAAGCAAAATCATGGTCATGGCTGCGATATCAGCGGTTG 718 Query 769 CACTTGTTCTACACGTGCTCCTCACGTGGTTTGTCATTGAGGGGCTCCAGTGGGGCACGG 828 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 719 CACTTGTTCTACACGTGCTCTTCACGTGGTTTGTCATTGAGGGGCTCCAGTGGGGCACGG 778 Query 829 CGGGTCTAGCCGTCGTGCTCAACGCCTCGTGGTGGTTCATTGTCGTGGCGCAGCTTGTGT 888 ||||||||||||||||||| ||||| |||||||||||||||||||| || ||||| |||| Sbjct 779 CGGGTCTAGCCGTCGTGCTTAACGCGTCGTGGTGGTTCATTGTCGTCGCACAGCTCGTGT 838 Query 889 ACATATTTAGTGGTACATGCGGTGAAGCTTGGTCTGGATTCTCATGGGAAGCTTTTCATA 948 ||||||||||||| ||||| ||||||||||||||||||||||| |||||||| || |||| Sbjct 839 ACATATTTAGTGGCACATGTGGTGAAGCTTGGTCTGGATTCTCCTGGGAAGCCTTCCATA 898 Query 949 ATTTGTGGAGTTTCGTCAGATTATCTTTGGCTTCTGCTGTTATGCTCTGTTTGGAGGTAT 1008 |||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| | Sbjct 899 ATTTGTGGAGTTTCGTTAGATTATCTTTGGCTTCTGCTGTTATGCTTTGTTTGGAGGTGT 958 Query 1009 GGTATCTTATGGCAGTCATATTATTTGCTGGATATTTGAAGAATGCTGAGATCTCCGTAG 1068 ||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 959 GGTATCTCATGGCAGTCATACTATTTGCTGGATATTTGAAGAATGCTGAGATCTCCGTAG 1018 Query 1069 CTGCTCTCTCCATCTGCATGAACATTTTGGGATGGACTGCAATGATTGCTATTGGGATGA 1128 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1019 CCGCTCTCTCCATCTGCATGAACATTTTGGGATGGACTGCAATGATTGCTATTGGGATGA 1078 Query 1129 ACGCAGCCGTAAGTGTGAGAGTGTCTAATGAATTAGGAGCAAAACATCCAAGAACCGCAA 1188 || ||||||||||||||||||||||||||||| |||||||||| |||||||||||||| | Sbjct 1079 ACACAGCCGTAAGTGTGAGAGTGTCTAATGAACTAGGAGCAAAGCATCCAAGAACCGCGA 1138 Query 1189 AATTCTCACTACTAGTGGCAGTGATAACATCTACAGTGATCGGACTTGCTATATCAATTG 1248 |||| || ||||||||||||||||||||||| ||| || ||||||||||||||||||||| Sbjct 1139 AATTTTCTCTACTAGTGGCAGTGATAACATCGACACTGCTCGGACTTGCTATATCAATTG 1198 Query 1249 CTCTACTCATCTTTAGAGATAAATATCCATCGTTATTTGTGGGAGACGAAGAAGTTATCA 1308 |||||||||||||||||||| ||||||||||||| |||||||||||||||||||| |||| Sbjct 1199 CTCTACTCATCTTTAGAGATCAATATCCATCGTTTTTTGTGGGAGACGAAGAAGTCATCA 1258 Query 1309 TTGTTGTTAAAGATCTTACACCAATACTCGCAGTCTCTATTGTCATCAACAATGTCCAAC 1368 ||||||||||||||||||||||||| || || |||| |||||||||||||||||||||| Sbjct 1259 TTGTTGTTAAAGATCTTACACCAATTCTTACACTCTCCATTGTCATCAACAATGTCCAAC 1318 Query 1369 CTGTCTTATCAGGGGTGGCTGTGGGAGCTGGATGGCAAGCAGTTGTGGCATACGTTAACA 1428 |||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||| Sbjct 1319 CTGTCTTATCAGGGGTGGCTGTGGGAGCTGGATGGCAAGCAGCCGTGGCGTACGTTAACA 1378 Query 1429 TAGTATGTTATTACGTGTTTGGAATCCCATTTGGTCTGTTACTAGGCTACAAGCTTAACT 1488 |||| || |||||| |||||||||||||||||||||| ||| |||| ||||||||||||| Sbjct 1379 TAGTCTGCTATTACTTGTTTGGAATCCCATTTGGTCTATTATTAGGATACAAGCTTAACT 1438 Query 1489 TTGGTGTAATGGGAATCTGGTGCGGAATGTTGACAGGAACCGTGGTTCAGACAATAGTCT 1548 |||| ||||||||||| ||||||||||||||||| ||||||||||| ||||||||||||| Sbjct 1439 TTGGCGTAATGGGAATTTGGTGCGGAATGTTGACGGGAACCGTGGTACAGACAATAGTCT 1498 Query 1549 TAACATGGATGATCTGTAGAACAAATTGGGACACAGAGGCTGCAATGGCTGAGGGTAGGA 1608 |||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 1499 TAACATTGATGATCTGCAGAACAAATTGGGACACAGAGGCTGCAATGGCTGAGGGTAGGA 1558 Query 1609 TAAGAGAGTGGGGAGGAGAAGTATCAGATCAACTCTTAAACTAAAAAGACATTATAAGAA 1668 ||||| ||||||||||||||| |||||| |||||||||||||||||||||||| |||||| Sbjct 1559 TAAGAAAGTGGGGAGGAGAAGGATCAGAGCAACTCTTAAACTAAAAAGACATTTTAAGAA 1618 Query 1669 GTGATATA--GT-TTGT--GTTTT-ATTAATCTCGTGATTTGTATTCATGTCGAATCTTT 1722 ||| ||| || || | || || ||||| |||||||||||||||||||| ||| |||| Sbjct 1619 GTGGTATTTTGTGTTTTTAGTGTTCATTAACCTCGTGATTTGTATTCATGTTGAACCTTT 1678 Query 1723 -GTTGCATCAAAGTTTGTTTTTGTGTCTTTTTGGTTGTACCATGAGTCTTGT 1773 |||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 1679 TGTTGCATCAAAGTTTGTTTTTGTGTCTTTTTGGTTGTATCATGAGTCTTGT 1730 > Ahg936365 jgi|Araly1|936365|scaffold_500556.1 Length=1544 Score = 1860 bits (1007), Expect = 0.0 Identities = 1353/1518 (89%), Gaps = 31/1518 (2%) Strand=Plus/Plus Query 163 AAGACAAA-ATTCTTACGGAGACCCTTCT-ATCTGCGGCGGAAGAACCA-CCTGCTCTTC 219 |||||||| | | | |||||||| ||||| | |||||||||||||| || |||| ||||| Sbjct 29 AAGACAAAGA-TATAACGGAGACGCTTCTCA-CTGCGGCGGAAGAA-CATCCTGATCTTC 85 Query 220 CTTTCTCATCCGTGGAAGATATTCCTCCGATCACCACCGTTGGTGGCTTCGTCAAGGAGT 279 |||||| |||||| || ||||||||||||||||||||||| ||||||||||| | ||||| Sbjct 86 CTTTCTTATCCGTCGACGATATTCCTCCGATCACCACCGTCGGTGGCTTCGTTAGGGAGT 145 Query 280 TCAACGTGGAGGTCAAAAAGCTATGGTACTTGGCAGGGCCAGCCATTTTCATGTCTAT-A 338 |||||||||| ||||||||||||||||||||| || || |||||||||| ||| | | Sbjct 146 TCAACGTGGAAACCAAAAAGCTATGGTACTTGGCCGGCCCCGCCATTTTCACGTCCGTGA 205 Query 339 ACCCAATATTCTCTCGGCGCTGCTACTCAGGTCTTCGCCGGACACATCAGCACCATCGCT 398 | ||||||||||||||||||| ||||||||||||||| || |||||||||||||||||| Sbjct 206 A-CCAATATTCTCTCGGCGCTATTACTCAGGTCTTCGCTGGTCACATCAGCACCATCGCT 264 Query 399 CTCGCAGCGGTCTCCGTTGAAAACTCGGTCATCGCTGGATTCTCATTTGGTGTCATGCTT 458 || || || |||||||| |||||||| ||| | || || |||||||| || |||||||| Sbjct 265 CTTGCCGCTGTCTCCGTCGAAAACTCCGTCGTTGCCGGCTTCTCATTCGGCATCATGCTT 324 Query 459 GGAATGGGAAGCGCGTTAGAAACGCTATGTGGACAAGCGTTTGGAGCAGGGAAATTGTCA 518 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 325 GGAATGGGAAGTGCGTTAGAAACGCTATGTGGACAAGCGTTTGGAGCAGGGAAATTGTCA 384 Query 519 ATGCTTGGCGTTTACTTGCAACGATCATGGGTGATACTAAACGTGACCGCGGTTATTCTC 578 ||||| ||||||||||||||||| |||||||||||||||||||||||||| |||| ||| Sbjct 385 ATGCTCGGCGTTTACTTGCAACGTTCATGGGTGATACTAAACGTGACCGCTCTTATCCTC 444 Query 579 TCGCTTCTTTACATCTTCGCCGCTCCAATCCTCGCGTTCATCGGTCAAACGCCGGCGATC 638 || || |||||||| |||||||| ||||||||||||| |||||| |||||| |||||||| Sbjct 445 TCTCTCCTTTACATTTTCGCCGCCCCAATCCTCGCGTCCATCGGCCAAACGGCGGCGATC 504 Query 639 TCTAGCGCCACGGGAATATTTTCCATCTACATGATCCCTCAGATCTTT-GCTTACGCTG- 696 ||||||||| | |||||||||||||||||||||||||||||||| ||| || ||||| | Sbjct 505 TCTAGCGCCGCCGGAATATTTTCCATCTACATGATCCCTCAGAT-TTTCGCATACGC-GA 562 Query 697 TTAATTACCCAACGGCTAAGTTCTTGCAATCACAAAGCAAAATCATGGTGATGGCTGCGA 756 |||||| |||||| ||||| |||||||||||||||||||| || ||||| ||||| |||| Sbjct 563 TTAATTTCCCAACCGCTAAATTCTTGCAATCACAAAGCAAGATAATGGTCATGGCCGCGA 622 Query 757 TATCAGCGGTTGCACTTGTTCTACACGTGC-TCCTCACGTGGTTTGTCATTGAGGGGCTC 815 | || || |||||||||||| ||||||||| || |||||||||||||||||| | |||| Sbjct 623 TCTCGGCTGTTGCACTTGTTATACACGTGCCTC-TCACGTGGTTTGTCATTGTGAAGCTC 681 Query 816 CAGTGGGGCACGGCGGGTCTAGCCGTCGTGCTCAACGCCTCGTGG-TGGTTCATTGTCGT 874 || ||||| | | ||||||||||||||||||| ||||| |||||| || ||||||| | | Sbjct 682 CATTGGGGTATGCCGGGTCTAGCCGTCGTGCTTAACGCGTCGTGGGTG-TTCATTGACAT 740 Query 875 GGCGCAGCTTGTGTACATATTTAGTGGTACATGCGGTGAAGCTTGGTCTGGATTCTCATG 934 ||| ||||| |||||||||||||||||||| || ||||||||||||||||| || || || Sbjct 741 GGCTCAGCTCGTGTACATATTTAGTGGTACGTGTGGTGAAGCTTGGTCTGGTTTATCGTG 800 Query 935 GGAAGCTTTTCATAATTTGTGGAGTTTCGTCAGATTATCTTTGGCTTCTGCTGTTATGCT 994 ||| |||||||||||||||||| ||||||| ||||| ||||||||||||||||||||||| Sbjct 801 GGAGGCTTTTCATAATTTGTGGGGTTTCGTTAGATTGTCTTTGGCTTCTGCTGTTATGCT 860 Query 995 CTGTTTGGAGGTATGGTATCTTATGGCAGTCATATTATTTGCTGGATATTTGAAGAATGC 1054 |||||||||||| |||||| |||||||| ||||||||||||||||||||||||||||||| Sbjct 861 CTGTTTGGAGGTGTGGTATTTTATGGCAATCATATTATTTGCTGGATATTTGAAGAATGC 920 Query 1055 TGAGATCTCCGTAGCTGCTCTCTCCATCTGCATGAACATTTTGGGATGGACTGCAATGAT 1114 ||| |||||||| ||||| ||||||||||||||||| ||||||||||||||||| ||||| Sbjct 921 TGAAATCTCCGTTGCTGCCCTCTCCATCTGCATGAATATTTTGGGATGGACTGCTATGAT 980 Query 1115 TGCTATTGGGATGAACGCAGCCGTAAGTGTGAGAGTGTCTAATGAATTAGGAGCAAAACA 1174 |||||||||||||||| ||||||||||||||||||||||||||||| ||||||| || || Sbjct 981 TGCTATTGGGATGAACACAGCCGTAAGTGTGAGAGTGTCTAATGAACTAGGAGCTAACCA 1040 Query 1175 TCCAAGAACCGCAAAATTCTCACTACTAGTGGCAGTGATAACATCTACAGT-GATCGGAC 1233 |||||||||||| |||||||||||||||||||||||||| ||||| || || ||||||| Sbjct 1041 TCCAAGAACCGCGAAATTCTCACTACTAGTGGCAGTGATTACATCGAC-GTTGATCGGA- 1098 Query 1234 TTGC-TA-TATCAATTGCTCTACTCATCTTTAGAGATAAATATCCATCG-TTATTTGTGG 1290 || | | ||||||| | ||||||||||||||||||| ||||||||||| || |||||| Sbjct 1099 TT-CATTGTATCAATGGTTCTACTCATCTTTAGAGATCAATATCCATCGCTT-TTTGTGA 1156 Query 1291 GAGACGAAGAAGTTATCATTGTTGTTAAAGATCTTACACCAATACTCGCAGTCTCTATTG 1350 |||||||||||| |||| | |||||||||| || ||||||||||| ||| |||| |||| Sbjct 1157 AAGACGAAGAAGTCATCAATCTTGTTAAAGAACTCACACCAATACTTGCACTCTCCATTG 1216 Query 1351 TCATCAACAATGTCCAACCTGTCTTATCAGGGGTGGCTGTGGGAGCTGGATGGCAAGCAG 1410 ||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||| Sbjct 1217 TCATCAACAATGTCCAACCTGTCTTATCAGGTGTGGCTGTCGGAGCTGGATGGCAAGCAG 1276 Query 1411 TTGTGGCATACGTTAACATAGTATGTTATTACGTGTTTGGAATCCCATTTGGTCTGTTAC 1470 | ||||| ||||||||||| | |||||||||||||||||||| ||||||||||| ||| Sbjct 1277 TGGTGGCGTACGTTAACATCGCCTGTTATTACGTGTTTGGAATACCATTTGGTCTATTAT 1336 Query 1471 TAGGCTACAAGCTTAACTTTGGTGTAATGGGAATCTGGTGCGGAATGTTGACAGGAACCG 1530 | || ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 1337 TGGGATACAAGCTTAACTTTGGTGTAATGGGAATCTGGTGCGGAATGTTGACGGGAACCG 1396 Query 1531 TGGTTCAGACAATAGTCTTAACATGGATGATCTGTAGAACAAATTGGGACACAGAGGCTG 1590 |||||||||||||||| ||||||||||||||||| | |||||||||||||||||||||| Sbjct 1397 TGGTTCAGACAATAGTTTTAACATGGATGATCTGCAAAACAAATTGGGACACAGAGGCTT 1456 Query 1591 CAATGGCTGAGGGTAGGATAAGAGAGTGGGGAGGAGAAGTATCAGA--T----CAACTCT 1644 |||||||||||| |||||||||||| ||||||||||||||||| || | |||||| Sbjct 1457 CAATGGCTGAGGATAGGATAAGAGAATGGGGAGGAGAAGTATCGGAAATAAAGCAACTCA 1516 Query 1645 TAAACTAAAAAGACATTA 1662 |||||||||| ||||||| Sbjct 1517 TAAACTAAAA-GACATTA 1533 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 71076397170 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5