BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G38030.1
Length=1892
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494175 jgi|Araly1|494175|fgenesh2_kg.7__3608__AT5G38030.1 2521 0.0
Ahg936365 jgi|Araly1|936365|scaffold_500556.1 1860 0.0
> Ahg494175 jgi|Araly1|494175|fgenesh2_kg.7__3608__AT5G38030.1
Length=1730
Score = 2521 bits (1365), Expect = 0.0
Identities = 1612/1732 (93%), Gaps = 14/1732 (1%)
Strand=Plus/Plus
Query 53 TTTTCTATATAATTCATGTATGACTAATCCCAAGATGCTCACTCTTTGGTCTTTAGTCTT 112
||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||
Sbjct 2 TTTTCTATATAATTCATGTGTGACTAATCCCAAGATCCTCACTCTTTGGTCTTTAGTCTT 61
Query 113 TT-ACATGCTTTAATCTTTCCATCTTTGTCTCTATCTCGTGGATATGGAAGAAGACAAAA 171
|| |||| ||||||||||||||||| ||||||| |||||| || |||||| |||||||||
Sbjct 62 TTGACATTCTTTAATCTTTCCATCTCTGTCTCTGTCTCGTCGACATGGAAAAAGACAAAA 121
Query 172 TTCTTACGGAGACCCTTCTATCTGCGGCGGAAGAACCACCTGC-TCTTCCTTTCTCATCC 230
||| ||||||||||||||||||||||||||||||| |||| | ||||||||||||||||
Sbjct 122 ATCTAACGGAGACCCTTCTATCTGCGGCGGAAGAACGACCT-CATCTTCCTTTCTCATCC 180
Query 231 GTGGAAGATATTCCTCCGATCACCACCGTTGGTGGCTTCGTCAAGGAGTTCAACGTGGAG 290
|| || |||||||||||||||||||||||| |||||||| ||| |||||| |||||||||
Sbjct 181 GTAGATGATATTCCTCCGATCACCACCGTTCGTGGCTTCCTCAGGGAGTTTAACGTGGAG 240
Query 291 GTCAAAAAGCTATGGTACTTGGCAGGGCCAGCCATTTTCATGTC-TATAACCCAATATTC 349
||||||||||||||||||||||| |||||||| ||||||||||| | |||| || |||||
Sbjct 241 GTCAAAAAGCTATGGTACTTGGCCGGGCCAGCTATTTTCATGTCGT-TAACTCAGTATTC 299
Query 350 TCTCGGCGCTGCTACTCAGGTCTTCGCCGGACACATCAGCACCATCGCTCTCGCAGCGGT 409
|||||||||||||||||||||||||||||||||||||||||| |||||||| || || ||
Sbjct 300 TCTCGGCGCTGCTACTCAGGTCTTCGCCGGACACATCAGCACTATCGCTCTGGCGGCCGT 359
Query 410 CTCCGTTGAAAACTCGGTCATCGCTGGATTCTCATTTGGTGTCATGCTTGGAATGGGAAG 469
|||||| ||||||||||||||||| || ||||||||||| ||||||||||||||||||||
Sbjct 360 CTCCGTCGAAAACTCGGTCATCGCCGGGTTCTCATTTGGCGTCATGCTTGGAATGGGAAG 419
Query 470 CGCGTTAGAAACGCTATGTGGACAAGCGTTTGGAGCAGGGAAATTGTCAATGCTTGGCGT 529
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 CGCGTTAGAAACGCTATGTGGACAAGCGTTTGGAGCAGGGAAATTGTCAATGCTTGGCGT 479
Query 530 TTACTTGCAACGATCATGGGTGATACTAAACGTGACCGCGGTTATT-CTCTCGCTTCTTT 588
||||||||||||||||||||||||||| |||||||||||| || || ||||| || || |
Sbjct 480 TTACTTGCAACGATCATGGGTGATACTTAACGTGACCGCGATT-TTACTCTCTCTCCTAT 538
Query 589 ACATCTTCGCCGCTCCAATCCTCGCGTTCATCGGTCAAACGCCGGCGATCTCTAGCGCCA 648
|||| ||||||||||||||||| ||||||||||| || ||||| ||||||||||||||||
Sbjct 539 ACATTTTCGCCGCTCCAATCCTGGCGTTCATCGGCCAGACGCCAGCGATCTCTAGCGCCA 598
Query 649 CGGGAATATTTTCCATCTACATGATCCCTCAGATCTTTGCTTACGCTGTTAATTACCCAA 708
| |||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct 599 CAGGAATATTTTCCATCTACATGATCCCACAGATCTTTGCTTACGCCGTTAATTACCCAA 658
Query 709 CGGCTAAGTTCTTGCAATCACAAAGCAAAATCATGGTGATGGCTGCGATATCAGCGGTTG 768
| ||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 659 CCGCTAAATTCTTGCAATCACAAAGCAAAATCATGGTCATGGCTGCGATATCAGCGGTTG 718
Query 769 CACTTGTTCTACACGTGCTCCTCACGTGGTTTGTCATTGAGGGGCTCCAGTGGGGCACGG 828
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 719 CACTTGTTCTACACGTGCTCTTCACGTGGTTTGTCATTGAGGGGCTCCAGTGGGGCACGG 778
Query 829 CGGGTCTAGCCGTCGTGCTCAACGCCTCGTGGTGGTTCATTGTCGTGGCGCAGCTTGTGT 888
||||||||||||||||||| ||||| |||||||||||||||||||| || ||||| ||||
Sbjct 779 CGGGTCTAGCCGTCGTGCTTAACGCGTCGTGGTGGTTCATTGTCGTCGCACAGCTCGTGT 838
Query 889 ACATATTTAGTGGTACATGCGGTGAAGCTTGGTCTGGATTCTCATGGGAAGCTTTTCATA 948
||||||||||||| ||||| ||||||||||||||||||||||| |||||||| || ||||
Sbjct 839 ACATATTTAGTGGCACATGTGGTGAAGCTTGGTCTGGATTCTCCTGGGAAGCCTTCCATA 898
Query 949 ATTTGTGGAGTTTCGTCAGATTATCTTTGGCTTCTGCTGTTATGCTCTGTTTGGAGGTAT 1008
|||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| |
Sbjct 899 ATTTGTGGAGTTTCGTTAGATTATCTTTGGCTTCTGCTGTTATGCTTTGTTTGGAGGTGT 958
Query 1009 GGTATCTTATGGCAGTCATATTATTTGCTGGATATTTGAAGAATGCTGAGATCTCCGTAG 1068
||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 959 GGTATCTCATGGCAGTCATACTATTTGCTGGATATTTGAAGAATGCTGAGATCTCCGTAG 1018
Query 1069 CTGCTCTCTCCATCTGCATGAACATTTTGGGATGGACTGCAATGATTGCTATTGGGATGA 1128
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1019 CCGCTCTCTCCATCTGCATGAACATTTTGGGATGGACTGCAATGATTGCTATTGGGATGA 1078
Query 1129 ACGCAGCCGTAAGTGTGAGAGTGTCTAATGAATTAGGAGCAAAACATCCAAGAACCGCAA 1188
|| ||||||||||||||||||||||||||||| |||||||||| |||||||||||||| |
Sbjct 1079 ACACAGCCGTAAGTGTGAGAGTGTCTAATGAACTAGGAGCAAAGCATCCAAGAACCGCGA 1138
Query 1189 AATTCTCACTACTAGTGGCAGTGATAACATCTACAGTGATCGGACTTGCTATATCAATTG 1248
|||| || ||||||||||||||||||||||| ||| || |||||||||||||||||||||
Sbjct 1139 AATTTTCTCTACTAGTGGCAGTGATAACATCGACACTGCTCGGACTTGCTATATCAATTG 1198
Query 1249 CTCTACTCATCTTTAGAGATAAATATCCATCGTTATTTGTGGGAGACGAAGAAGTTATCA 1308
|||||||||||||||||||| ||||||||||||| |||||||||||||||||||| ||||
Sbjct 1199 CTCTACTCATCTTTAGAGATCAATATCCATCGTTTTTTGTGGGAGACGAAGAAGTCATCA 1258
Query 1309 TTGTTGTTAAAGATCTTACACCAATACTCGCAGTCTCTATTGTCATCAACAATGTCCAAC 1368
||||||||||||||||||||||||| || || |||| ||||||||||||||||||||||
Sbjct 1259 TTGTTGTTAAAGATCTTACACCAATTCTTACACTCTCCATTGTCATCAACAATGTCCAAC 1318
Query 1369 CTGTCTTATCAGGGGTGGCTGTGGGAGCTGGATGGCAAGCAGTTGTGGCATACGTTAACA 1428
|||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 1319 CTGTCTTATCAGGGGTGGCTGTGGGAGCTGGATGGCAAGCAGCCGTGGCGTACGTTAACA 1378
Query 1429 TAGTATGTTATTACGTGTTTGGAATCCCATTTGGTCTGTTACTAGGCTACAAGCTTAACT 1488
|||| || |||||| |||||||||||||||||||||| ||| |||| |||||||||||||
Sbjct 1379 TAGTCTGCTATTACTTGTTTGGAATCCCATTTGGTCTATTATTAGGATACAAGCTTAACT 1438
Query 1489 TTGGTGTAATGGGAATCTGGTGCGGAATGTTGACAGGAACCGTGGTTCAGACAATAGTCT 1548
|||| ||||||||||| ||||||||||||||||| ||||||||||| |||||||||||||
Sbjct 1439 TTGGCGTAATGGGAATTTGGTGCGGAATGTTGACGGGAACCGTGGTACAGACAATAGTCT 1498
Query 1549 TAACATGGATGATCTGTAGAACAAATTGGGACACAGAGGCTGCAATGGCTGAGGGTAGGA 1608
|||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1499 TAACATTGATGATCTGCAGAACAAATTGGGACACAGAGGCTGCAATGGCTGAGGGTAGGA 1558
Query 1609 TAAGAGAGTGGGGAGGAGAAGTATCAGATCAACTCTTAAACTAAAAAGACATTATAAGAA 1668
||||| ||||||||||||||| |||||| |||||||||||||||||||||||| ||||||
Sbjct 1559 TAAGAAAGTGGGGAGGAGAAGGATCAGAGCAACTCTTAAACTAAAAAGACATTTTAAGAA 1618
Query 1669 GTGATATA--GT-TTGT--GTTTT-ATTAATCTCGTGATTTGTATTCATGTCGAATCTTT 1722
||| ||| || || | || || ||||| |||||||||||||||||||| ||| ||||
Sbjct 1619 GTGGTATTTTGTGTTTTTAGTGTTCATTAACCTCGTGATTTGTATTCATGTTGAACCTTT 1678
Query 1723 -GTTGCATCAAAGTTTGTTTTTGTGTCTTTTTGGTTGTACCATGAGTCTTGT 1773
|||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1679 TGTTGCATCAAAGTTTGTTTTTGTGTCTTTTTGGTTGTATCATGAGTCTTGT 1730
> Ahg936365 jgi|Araly1|936365|scaffold_500556.1
Length=1544
Score = 1860 bits (1007), Expect = 0.0
Identities = 1353/1518 (89%), Gaps = 31/1518 (2%)
Strand=Plus/Plus
Query 163 AAGACAAA-ATTCTTACGGAGACCCTTCT-ATCTGCGGCGGAAGAACCA-CCTGCTCTTC 219
|||||||| | | | |||||||| ||||| | |||||||||||||| || |||| |||||
Sbjct 29 AAGACAAAGA-TATAACGGAGACGCTTCTCA-CTGCGGCGGAAGAA-CATCCTGATCTTC 85
Query 220 CTTTCTCATCCGTGGAAGATATTCCTCCGATCACCACCGTTGGTGGCTTCGTCAAGGAGT 279
|||||| |||||| || ||||||||||||||||||||||| ||||||||||| | |||||
Sbjct 86 CTTTCTTATCCGTCGACGATATTCCTCCGATCACCACCGTCGGTGGCTTCGTTAGGGAGT 145
Query 280 TCAACGTGGAGGTCAAAAAGCTATGGTACTTGGCAGGGCCAGCCATTTTCATGTCTAT-A 338
|||||||||| ||||||||||||||||||||| || || |||||||||| ||| | |
Sbjct 146 TCAACGTGGAAACCAAAAAGCTATGGTACTTGGCCGGCCCCGCCATTTTCACGTCCGTGA 205
Query 339 ACCCAATATTCTCTCGGCGCTGCTACTCAGGTCTTCGCCGGACACATCAGCACCATCGCT 398
| ||||||||||||||||||| ||||||||||||||| || ||||||||||||||||||
Sbjct 206 A-CCAATATTCTCTCGGCGCTATTACTCAGGTCTTCGCTGGTCACATCAGCACCATCGCT 264
Query 399 CTCGCAGCGGTCTCCGTTGAAAACTCGGTCATCGCTGGATTCTCATTTGGTGTCATGCTT 458
|| || || |||||||| |||||||| ||| | || || |||||||| || ||||||||
Sbjct 265 CTTGCCGCTGTCTCCGTCGAAAACTCCGTCGTTGCCGGCTTCTCATTCGGCATCATGCTT 324
Query 459 GGAATGGGAAGCGCGTTAGAAACGCTATGTGGACAAGCGTTTGGAGCAGGGAAATTGTCA 518
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 325 GGAATGGGAAGTGCGTTAGAAACGCTATGTGGACAAGCGTTTGGAGCAGGGAAATTGTCA 384
Query 519 ATGCTTGGCGTTTACTTGCAACGATCATGGGTGATACTAAACGTGACCGCGGTTATTCTC 578
||||| ||||||||||||||||| |||||||||||||||||||||||||| |||| |||
Sbjct 385 ATGCTCGGCGTTTACTTGCAACGTTCATGGGTGATACTAAACGTGACCGCTCTTATCCTC 444
Query 579 TCGCTTCTTTACATCTTCGCCGCTCCAATCCTCGCGTTCATCGGTCAAACGCCGGCGATC 638
|| || |||||||| |||||||| ||||||||||||| |||||| |||||| ||||||||
Sbjct 445 TCTCTCCTTTACATTTTCGCCGCCCCAATCCTCGCGTCCATCGGCCAAACGGCGGCGATC 504
Query 639 TCTAGCGCCACGGGAATATTTTCCATCTACATGATCCCTCAGATCTTT-GCTTACGCTG- 696
||||||||| | |||||||||||||||||||||||||||||||| ||| || ||||| |
Sbjct 505 TCTAGCGCCGCCGGAATATTTTCCATCTACATGATCCCTCAGAT-TTTCGCATACGC-GA 562
Query 697 TTAATTACCCAACGGCTAAGTTCTTGCAATCACAAAGCAAAATCATGGTGATGGCTGCGA 756
|||||| |||||| ||||| |||||||||||||||||||| || ||||| ||||| ||||
Sbjct 563 TTAATTTCCCAACCGCTAAATTCTTGCAATCACAAAGCAAGATAATGGTCATGGCCGCGA 622
Query 757 TATCAGCGGTTGCACTTGTTCTACACGTGC-TCCTCACGTGGTTTGTCATTGAGGGGCTC 815
| || || |||||||||||| ||||||||| || |||||||||||||||||| | ||||
Sbjct 623 TCTCGGCTGTTGCACTTGTTATACACGTGCCTC-TCACGTGGTTTGTCATTGTGAAGCTC 681
Query 816 CAGTGGGGCACGGCGGGTCTAGCCGTCGTGCTCAACGCCTCGTGG-TGGTTCATTGTCGT 874
|| ||||| | | ||||||||||||||||||| ||||| |||||| || ||||||| | |
Sbjct 682 CATTGGGGTATGCCGGGTCTAGCCGTCGTGCTTAACGCGTCGTGGGTG-TTCATTGACAT 740
Query 875 GGCGCAGCTTGTGTACATATTTAGTGGTACATGCGGTGAAGCTTGGTCTGGATTCTCATG 934
||| ||||| |||||||||||||||||||| || ||||||||||||||||| || || ||
Sbjct 741 GGCTCAGCTCGTGTACATATTTAGTGGTACGTGTGGTGAAGCTTGGTCTGGTTTATCGTG 800
Query 935 GGAAGCTTTTCATAATTTGTGGAGTTTCGTCAGATTATCTTTGGCTTCTGCTGTTATGCT 994
||| |||||||||||||||||| ||||||| ||||| |||||||||||||||||||||||
Sbjct 801 GGAGGCTTTTCATAATTTGTGGGGTTTCGTTAGATTGTCTTTGGCTTCTGCTGTTATGCT 860
Query 995 CTGTTTGGAGGTATGGTATCTTATGGCAGTCATATTATTTGCTGGATATTTGAAGAATGC 1054
|||||||||||| |||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct 861 CTGTTTGGAGGTGTGGTATTTTATGGCAATCATATTATTTGCTGGATATTTGAAGAATGC 920
Query 1055 TGAGATCTCCGTAGCTGCTCTCTCCATCTGCATGAACATTTTGGGATGGACTGCAATGAT 1114
||| |||||||| ||||| ||||||||||||||||| ||||||||||||||||| |||||
Sbjct 921 TGAAATCTCCGTTGCTGCCCTCTCCATCTGCATGAATATTTTGGGATGGACTGCTATGAT 980
Query 1115 TGCTATTGGGATGAACGCAGCCGTAAGTGTGAGAGTGTCTAATGAATTAGGAGCAAAACA 1174
|||||||||||||||| ||||||||||||||||||||||||||||| ||||||| || ||
Sbjct 981 TGCTATTGGGATGAACACAGCCGTAAGTGTGAGAGTGTCTAATGAACTAGGAGCTAACCA 1040
Query 1175 TCCAAGAACCGCAAAATTCTCACTACTAGTGGCAGTGATAACATCTACAGT-GATCGGAC 1233
|||||||||||| |||||||||||||||||||||||||| ||||| || || |||||||
Sbjct 1041 TCCAAGAACCGCGAAATTCTCACTACTAGTGGCAGTGATTACATCGAC-GTTGATCGGA- 1098
Query 1234 TTGC-TA-TATCAATTGCTCTACTCATCTTTAGAGATAAATATCCATCG-TTATTTGTGG 1290
|| | | ||||||| | ||||||||||||||||||| ||||||||||| || ||||||
Sbjct 1099 TT-CATTGTATCAATGGTTCTACTCATCTTTAGAGATCAATATCCATCGCTT-TTTGTGA 1156
Query 1291 GAGACGAAGAAGTTATCATTGTTGTTAAAGATCTTACACCAATACTCGCAGTCTCTATTG 1350
|||||||||||| |||| | |||||||||| || ||||||||||| ||| |||| ||||
Sbjct 1157 AAGACGAAGAAGTCATCAATCTTGTTAAAGAACTCACACCAATACTTGCACTCTCCATTG 1216
Query 1351 TCATCAACAATGTCCAACCTGTCTTATCAGGGGTGGCTGTGGGAGCTGGATGGCAAGCAG 1410
||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct 1217 TCATCAACAATGTCCAACCTGTCTTATCAGGTGTGGCTGTCGGAGCTGGATGGCAAGCAG 1276
Query 1411 TTGTGGCATACGTTAACATAGTATGTTATTACGTGTTTGGAATCCCATTTGGTCTGTTAC 1470
| ||||| ||||||||||| | |||||||||||||||||||| ||||||||||| |||
Sbjct 1277 TGGTGGCGTACGTTAACATCGCCTGTTATTACGTGTTTGGAATACCATTTGGTCTATTAT 1336
Query 1471 TAGGCTACAAGCTTAACTTTGGTGTAATGGGAATCTGGTGCGGAATGTTGACAGGAACCG 1530
| || ||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1337 TGGGATACAAGCTTAACTTTGGTGTAATGGGAATCTGGTGCGGAATGTTGACGGGAACCG 1396
Query 1531 TGGTTCAGACAATAGTCTTAACATGGATGATCTGTAGAACAAATTGGGACACAGAGGCTG 1590
|||||||||||||||| ||||||||||||||||| | ||||||||||||||||||||||
Sbjct 1397 TGGTTCAGACAATAGTTTTAACATGGATGATCTGCAAAACAAATTGGGACACAGAGGCTT 1456
Query 1591 CAATGGCTGAGGGTAGGATAAGAGAGTGGGGAGGAGAAGTATCAGA--T----CAACTCT 1644
|||||||||||| |||||||||||| ||||||||||||||||| || | ||||||
Sbjct 1457 CAATGGCTGAGGATAGGATAAGAGAATGGGGAGGAGAAGTATCGGAAATAAAGCAACTCA 1516
Query 1645 TAAACTAAAAAGACATTA 1662
|||||||||| |||||||
Sbjct 1517 TAAACTAAAA-GACATTA 1533
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71076397170
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5