BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G38050.1

Length=1063
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg948082 jgi|Araly1|948082|scaffold_704311.1                        289    3e-77


> Ahg948082 jgi|Araly1|948082|scaffold_704311.1
Length=223

 Score =  289 bits (156),  Expect = 3e-77
 Identities = 186/200 (93%), Gaps = 3/200 (2%)
 Strand=Plus/Plus

Query  50   TTTTGAAAATTTGATGAAGAAGAAATGGACAATCACAATGAAGAACCAAAAATCGCACCA  109
            ||||| ||||| ||||||||||||||||||||  |||||||||| |||| ||||||||||
Sbjct  1    TTTTG-AAATTGGATGAAGAAGAAATGGACAAGAACAATGAAGAGCCAAGAATCGCACCA  59

Query  110  GAACCTAATCGTTGGTACAACATTACGTTAGGACCAACACTACTCAACAACAATCACTCA  169
            |||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||
Sbjct  60   GAACCTAATCGTTGGTACAATATTACGTTAGGACCATCACTACTCAACAACAATCACTCA  119

Query  170  TACTCTCCCAAATTCTGCACTTTACGATATGAGTTTAAACCTGCTTCAATTGAC-AGTAC  228
            ||||||||||||||||||||||||||||||||||||||||| || ||||||||  | |||
Sbjct  120  TACTCTCCCAAATTCTGCACTTTACGATATGAGTTTAAACCGGCGTCAATTGATGA-TAC  178

Query  229  TAAACCAGGATTGTTACATA  248
            |||||| |||||||||||||
Sbjct  179  TAAACCGGGATTGTTACATA  198



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 39571587846


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5