BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G38060.1

Length=619
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg891979 jgi|Araly1|891979|Al_scaffold_0007_3965                    606    5e-173


> Ahg891979 jgi|Araly1|891979|Al_scaffold_0007_3965
Length=402

 Score =  606 bits (328),  Expect = 5e-173
 Identities = 382/407 (94%), Gaps = 7/407 (2%)
 Strand=Plus/Plus

Query  47   ATGTCTCAAGCTTTACTAAATTTTC-AGCTTTCTTCTTCTTCTTTCTCAATCCCCAAAAC  105
            ||||||||||||||||||||| ||| ||  |||  || ||||||||||||||||||||||
Sbjct  1    ATGTCTCAAGCTTTACTAAATCTTCAAG--TTC--CTCCTTCTTTCTCAATCCCCAAAAC  56

Query  106  CCTAATTCACTCTCACTCTCTCAAAACCTTGAAA-ACCCCGAAACTAAACTCACGACAAT  164
            |||||||||||||||||| ||||||||||| ||| |  || ||||||||||||||| |||
Sbjct  57   CCTAATTCACTCTCACTCCCTCAAAACCTT-AAAGAAACCTAAACTAAACTCACGAAAAT  115

Query  165  TCTTCTCACAATGCACAGCTTCTTCTTCCGATGGACCCAAAACCTTAAGAACTTGCAAAA  224
            || ||| ||||||| ||| ||||||||||||  |||||||||||||||||||||||||||
Sbjct  116  TCCTCTTACAATGCTCAGTTTCTTCTTCCGACAGACCCAAAACCTTAAGAACTTGCAAAA  175

Query  225  ACTGCAAAACCCAATTCGATCCTCTCCTCAATAACCCACGCGCTTGTAGATTCCACACTG  284
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  176  ACTGCAAAACCCAATTCGATCCTCTCCTCAATAACCCACGCGCTTGTAGATTCCACACTG  235

Query  285  CTCATTTCGGAGGTGAGACAAAGAGGAAATTTGAGAGTGTATATACAGGTGGAACAATGG  344
            ||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct  236  CTCATTTCGGAGGTGAGACGAAGAGGAAATTTGAGAGTGTATATACTGGTGGAACAATGG  295

Query  345  ATACACCAAATTCTGGAAAAGTGTTACAATATTGGCATTGTTGTGGTTCTGAAGATCCTT  404
            |||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||
Sbjct  296  ATACACCAAATTCTGGAAAAGTATTACAATATTGGCATTGTTGTGGCTCTGAAGATCCTT  355

Query  405  TTGATTCTGGTTGTACTGCTTCTCCTCATACAACATATGATGATTGA  451
            ||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct  356  TTGATTCTGGTTGTACTGCTTCTCCTCATGCAACATATGATGATTGA  402



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 22645012698


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5