BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G38060.1 Length=619 Score E Sequences producing significant alignments: (Bits) Value Ahg891979 jgi|Araly1|891979|Al_scaffold_0007_3965 606 5e-173 > Ahg891979 jgi|Araly1|891979|Al_scaffold_0007_3965 Length=402 Score = 606 bits (328), Expect = 5e-173 Identities = 382/407 (94%), Gaps = 7/407 (2%) Strand=Plus/Plus Query 47 ATGTCTCAAGCTTTACTAAATTTTC-AGCTTTCTTCTTCTTCTTTCTCAATCCCCAAAAC 105 ||||||||||||||||||||| ||| || ||| || |||||||||||||||||||||| Sbjct 1 ATGTCTCAAGCTTTACTAAATCTTCAAG--TTC--CTCCTTCTTTCTCAATCCCCAAAAC 56 Query 106 CCTAATTCACTCTCACTCTCTCAAAACCTTGAAA-ACCCCGAAACTAAACTCACGACAAT 164 |||||||||||||||||| ||||||||||| ||| | || ||||||||||||||| ||| Sbjct 57 CCTAATTCACTCTCACTCCCTCAAAACCTT-AAAGAAACCTAAACTAAACTCACGAAAAT 115 Query 165 TCTTCTCACAATGCACAGCTTCTTCTTCCGATGGACCCAAAACCTTAAGAACTTGCAAAA 224 || ||| ||||||| ||| |||||||||||| ||||||||||||||||||||||||||| Sbjct 116 TCCTCTTACAATGCTCAGTTTCTTCTTCCGACAGACCCAAAACCTTAAGAACTTGCAAAA 175 Query 225 ACTGCAAAACCCAATTCGATCCTCTCCTCAATAACCCACGCGCTTGTAGATTCCACACTG 284 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 176 ACTGCAAAACCCAATTCGATCCTCTCCTCAATAACCCACGCGCTTGTAGATTCCACACTG 235 Query 285 CTCATTTCGGAGGTGAGACAAAGAGGAAATTTGAGAGTGTATATACAGGTGGAACAATGG 344 ||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||| Sbjct 236 CTCATTTCGGAGGTGAGACGAAGAGGAAATTTGAGAGTGTATATACTGGTGGAACAATGG 295 Query 345 ATACACCAAATTCTGGAAAAGTGTTACAATATTGGCATTGTTGTGGTTCTGAAGATCCTT 404 |||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||| Sbjct 296 ATACACCAAATTCTGGAAAAGTATTACAATATTGGCATTGTTGTGGCTCTGAAGATCCTT 355 Query 405 TTGATTCTGGTTGTACTGCTTCTCCTCATACAACATATGATGATTGA 451 ||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 356 TTGATTCTGGTTGTACTGCTTCTCCTCATGCAACATATGATGATTGA 402 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 22645012698 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5