BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G38070.1
Length=906
Score E
Sequences producing significant alignments: (Bits) Value
Ahg330648 jgi|Araly1|330648|fgenesh1_pm.C_scaffold_7002875 1192 0.0
> Ahg330648 jgi|Araly1|330648|fgenesh1_pm.C_scaffold_7002875
Length=780
Score = 1192 bits (645), Expect = 0.0
Identities = 737/782 (94%), Gaps = 4/782 (1%)
Strand=Plus/Plus
Query 26 ATGGGAGATCATTTAGTGTTGGTGGTTGATCGGTTATCAAGCGATTCTGGTC-TTGGGAC 84
||||||||||||||||||||||||||||||||||||||||||||||| || | |||||||
Sbjct 1 ATGGGAGATCATTTAGTGTTGGTGGTTGATCGGTTATCAAGCGATTC-GGGCGTTGGGAC 59
Query 85 GGTTAACCGAGCAGACCCGAAAGCTGACTCGGTTAACGAAGATGGTGTATCTGAATCTAT 144
||| |||||| |||| ||| |||||| |||||| | |||||||| | |||||||| |
Sbjct 60 GGTGAACCGAACAGAGGTTAAAACTGACTTGGTTAATGGAGATGGTGCACCTGAATCTGT 119
Query 145 ATCTGCAGGAGCTGATTTATGTGAGAGCAAATTTGTACAGTGTAGGATTTGTCATGATGA 204
|||||||||| |||||||||||||||| ||||| |||| |||||||||||||||||||||
Sbjct 120 ATCTGCAGGAACTGATTTATGTGAGAGTAAATTCGTACGGTGTAGGATTTGTCATGATGA 179
Query 205 AGATGAAGATACCAACATGGATACGCCTTGTTCTTGTTCTGGAACATTAAAGTTTGCACA 264
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 AGATGAAGATTCCAACATGGATACGCCTTGTTCTTGTTCTGGAACATTAAAGTTTGCACA 239
Query 265 TCATAATTGCGTCCAGAGATGGTGCAATGAGAAAGGTGATACGGTATGCGAAATTTGTCG 324
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 240 TCATAATTGCGTCCAGAGATGGTGCAATGAGAAAGGTGATACCATATGCGAAATTTGTCG 299
Query 325 TCAGCAATATAAACCTGGTTACACAGCTCCACGACAATTGTTTCACTACACAGGCATTTC 384
|||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 300 TCAGCAATATAAACCTGGCTACACAGCCCCACGACAATTGTTTCACTACACAGGCATTTC 359
Query 385 TATGAACTTCGGTAGTGATTGGGGAATCGAGGGACTAGATCTTCGTAATCCTTATTTCCT 444
|||||||||| |||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct 360 TATGAACTTCAGTAGCGATTGGGGAATCGAAGGACTAGATCTTCGTAATCCTTATTTCCT 419
Query 445 AACCTGGGGGGATGCGGATGATGATCATGATCTTTACTCATTTCATAGCCCCACAAGCTT 504
|||||||||| |||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 420 AACCTGGGGGCATGCAGATGATGATCATGATCTATACTCATTTCATAGCCCCACAAGCTT 479
Query 505 GATTTGTTGCCGTC-TAATTGCCTTGCTATTCGTCCTTCTGCTCTTCCTGCGCCATTCTC 563
|||||||||||| | ||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 480 GATTTGTTGCCG-CGTAATTGCCTTGCTATTCGTCCTTCTGCTCTTTCTGCGCCATTCTC 538
Query 564 TTCCAGTTTTACTAGGTGGAGTCGATGATTTCTCGATAACTTTGCTCATGTTACCATTAG 623
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 539 TTCCAGTTTTACTAGGTGGAGTCGATGATTTCTCGTTAACTTTGCTCATGTTACCATTAG 598
Query 624 TGAGAACATTAGGCATCTTGTTGATTGCTTATGTATTTTTCAAGTCATTCATTGTTATAC 683
|||||||||||| ||||||||||||||| ||||| ||| |||||||||||||||||||||
Sbjct 599 TGAGAACATTAGCCATCTTGTTGATTGCATATGTCTTTGTCAAGTCATTCATTGTTATAC 658
Query 684 AACGTTGCAGGCAAGAGAGGGATACTAGACTCTCTGGTTTCTCGTCTGACGAAGAAACTG 743
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 659 AACGTTGCAGGCAAGAGAGGGATACTAGACTCTCTGGTTTCTCGTCTGATGAAGAAACTG 718
Query 744 CACCGCCTCGGATATTGATGGCATTGCCGGAAAGACCCGAGCTTCATGTTCCTGTAAATT 803
||||||||||||||| ||||||||||||||| |||||||| ||||||||||| ||||| |
Sbjct 719 CACCGCCTCGGATATCGATGGCATTGCCGGAGAGACCCGAACTTCATGTTCCCGTAAACT 778
Query 804 AA 805
||
Sbjct 779 AA 780
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33586289877
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5