BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G38080.1

Length=474
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg494170 jgi|Araly1|494170|fgenesh2_kg.7__3603__AT5G38080.1         329    9e-90


> Ahg494170 jgi|Araly1|494170|fgenesh2_kg.7__3603__AT5G38080.1
Length=831

 Score =  329 bits (178),  Expect = 9e-90
 Identities = 207/221 (94%), Gaps = 2/221 (1%)
 Strand=Plus/Plus

Query  222  CATCTGTCACACGTTCGGCTTTTGTATTTTCGTCCACCTCCTCTATTCGGTTTCTCCTCA  281
            ||| |||||||||||||||||||||| |||| || |||||||||||||||||||||||||
Sbjct  609  CATATGTCACACGTTCGGCTTTTGTAATTTCTTCAACCTCCTCTATTCGGTTTCTCCTCA  668

Query  282  CTTGGCTCTATACTTCGGTCTCCCTTGTTTGCTAGGTTTCGTAGCCGTCATGATTGCACC  341
            |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct  669  CTTGGCTCTATACTTCGGCCTCCCTTGTTTGCTAGGTTTCGTAGCCGTCATGATTGCACC  728

Query  342  AAGTTGTCCGTATCAATGGAAAGGCCTATGCAACAAAGTGCAAGAGTTACGAGACTG-GT  400
            | ||||||| |||| |||| |||||||||||||||||||||||||||||||||| |  ||
Sbjct  729  AGGTTGTCCATATCTATGGGAAGGCCTATGCAACAAAGTGCAAGAGTTACGAGA-TAAGT  787

Query  401  GGAAGCATGTGAATCGACCACAATCCTCGGTTGTTATTGTT  441
            ||||| ||||||| |||||||||||||||||||||||||||
Sbjct  788  GGAAGTATGTGAAACGACCACAATCCTCGGTTGTTATTGTT  828


 Score =  309 bits (167),  Expect = 1e-83
 Identities = 208/227 (92%), Gaps = 6/227 (3%)
 Strand=Plus/Plus

Query  1    ATGACTAATACTAATGTTGCTGCTACA-AAGCCT-CTTTCTACTATGGTCGATGAATCTC  58
            ||||||||||||||||||||||||| | |||||| | ||||||||| |  ||||||||| 
Sbjct  1    ATGACTAATACTAATGTTGCTGCTA-ATAAGCCTAC-TTCTACTATCGAAGATGAATCTT  58

Query  59   CTAGCCTTCTCCGTG-ATTGGTGTATGAACAAGAACCTACAATACAACTTTGCGATGAAC  117
            |||| || || |||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct  59   CTAGTCTCCTTCGTGCA-TGGTGTATGAACAAGAACCTACAATACAACTTTGCGATGAAC  117

Query  118  TTCGTCATGATAATCATCAACATTGAAGCAATCTTGTCTATCAGAAACCACGAAAATCAC  177
             || ||||||||||||||||||| ||||||||||||| ||| ||||||||||||| ||||
Sbjct  118  ATCTTCATGATAATCATCAACATCGAAGCAATCTTGTATATGAGAAACCACGAAATTCAC  177

Query  178  GCAATCGAGAATGTCTTAGCATCTAAAGCTTACTTCGTGGGACGCAT  224
            |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  178  GCAATCGAGAATGTCTTAGCATCTAAAGCTTACTTCGTGGGACGCAT  224



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 17170015050


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5