BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G38090.1

Length=441
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg330647 jgi|Araly1|330647|fgenesh1_pm.C_scaffold_7002874           270    5e-72


> Ahg330647 jgi|Araly1|330647|fgenesh1_pm.C_scaffold_7002874
Length=462

 Score =  270 bits (146),  Expect = 5e-72
 Identities = 292/358 (82%), Gaps = 28/358 (8%)
 Strand=Plus/Plus

Query  1    ATGACTAATACTAATGTGTCTGCTAATAAGCCTACTGCAACAATCGTCCATGAATCTCCT  60
            ||||||||||||||||| ||||||| |||| |||||| |||| || ||||||||||||||
Sbjct  1    ATGACTAATACTAATGTTTCTGCTACTAAGTCTACTGAAACAGTCTTCCATGAATCTCCT  60

Query  61   AGCCCCCTCCGTGTATGGTGGATGAAGACGAACGTACGATATGACATTGCGATGAACAGC  120
            |||| ||||||| | |||||||||||  |||| |||||||||||||||||||||||||||
Sbjct  61   AGCCTCCTCCGTCTCTGGTGGATGAACTCGAATGTACGATATGACATTGCGATGAACAGC  120

Query  121  TCCATTATAATCCTCAACATTGCAGCAATCTTGTATATGAAATTCACCAAGATTCCATTT  180
            | |||||||||||||||||||||||| ||| ||||||| ||||| | |||||| || || 
Sbjct  121  TTCATTATAATCCTCAACATTGCAGCGATCATGTATATAAAATTTAACAAGATCCCCTTA  180

Query  181  AACGAAGT-TGC-T---G--AATCTTGGATT---------GC-------C-TACGTCATG  216
            |||||||| ||  |   |  ||||  |||||         ||       | ||| |||| 
Sbjct  181  AACGAAGTATGGATTTCGGGAATCAAGGATTCTTCACAATGCAAAGATGCCTACATCATA  240

Query  217  GGACGCATCTGTAACAATATT-GGCTTTGTTATTTTCCTTCATCTCCTCT-ATTGTATCT  274
            |||||||||||| | ||  || ||||||||||||||||| || ||| | | |||||||||
Sbjct  241  GGACGCATCTGTCATAAC-TTAGGCTTTGTTATTTTCCTCCACCTC-TGTTATTGTATCT  298

Query  275  CTACCCGCTTGGCTCTATTCGTCGTTCTACACTTTTGTCTACCTTATTGGCTATGGTA  332
            ||||||| |||||||||||||| | ||||| |||| ||||||||| ||||||||||||
Sbjct  299  CTACCCGTTTGGCTCTATTCGTTGGTCTACTCTTTGGTCTACCTTGTTGGCTATGGTA  356



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 15910880613


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5