BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G38100.1
Length=1404
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494169 jgi|Araly1|494169|fgenesh2_kg.7__3602__AT5G38100.1 1537 0.0
> Ahg494169 jgi|Araly1|494169|fgenesh2_kg.7__3602__AT5G38100.1
Length=1099
Score = 1537 bits (832), Expect = 0.0
Identities = 1016/1105 (92%), Gaps = 12/1105 (1%)
Strand=Plus/Plus
Query 14 TCATAAATACGAAGCAATGTCAACATCTTCTCACATGTACCCGATGAGCAGCGGTCACGA 73
||| ||| ||| ||||||||||||||| |||||| |||||||||||||||||||| ||||
Sbjct 1 TCACAAAAACGGAGCAATGTCAACATCATCTCACTTGTACCCGATGAGCAGCGGTGACGA 60
Query 74 TCAACACAGTTACATCCATAATTCTTCATACCAAAAAGCAGCTATAAGTAGCGCTGTAGA 133
||||||||||||||||||||| ||||||||||| |||| |||||||||| |||||| |||
Sbjct 61 TCAACACAGTTACATCCATAACTCTTCATACCAGAAAGTAGCTATAAGTGGCGCTGAAGA 120
Query 134 AAAGACAAGACGATGCATCTTTGAAAAGCTCGACCTCCAACTAAGTTCTGATTTTGGTAC 193
||||||||||||||||||||| |||||||||||||||||||| |||||||||||| ||||
Sbjct 121 AAAGACAAGACGATGCATCTTGGAAAAGCTCGACCTCCAACTGAGTTCTGATTTTAGTAC 180
Query 194 TTTTAGAATTGCGGATTTTGGATGTTCTATTGGACCGAACACGTTCCATGTTGCTCAAAG 253
|||||||||||| |||||||| ||||||| |||||| |||||||| ||||||| ||||||
Sbjct 181 TTTTAGAATTGCAGATTTTGGTTGTTCTACTGGACCTAACACGTTTCATGTTGTTCAAAG 240
Query 254 TATCATTGATACAGTGAAATCCAAACGCTTGGAAGAAAGTACCGAAAATAGCCTTGTGCC 313
|||||||||||| || ||||||| || ||| |||||| | |||| |||||||||||||
Sbjct 241 TATCATTGATACGGTCAAATCCAGACACTTTAAAGAAAACAACGAACATAGCCTTGTGCC 300
Query 314 ACTAGAGTTCCAAGTTTTCTTCAATGATCAAC-CCACCAATGACTTCAACACACTCTTTA 372
|| |||||||||||||||||||| |||| || ||||||||||||||||||||||||| |
Sbjct 301 TCTCGAGTTCCAAGTTTTCTTCAACGATC-ACACCACCAATGACTTCAACACACTCTTCA 359
Query 373 GAACCCAACCTCTTTCTCCAGAACGCGAATATTTCTCAGTCGGAGTTCCAGGCTCTTTCT 432
||||||||||| ||| || ||||||||||||||||| ||||||||||||||||||||||
Sbjct 360 AAACCCAACCTCCTTCCCCGGAACGCGAATATTTCTCTGTCGGAGTTCCAGGCTCTTTCT 419
Query 433 ATGGTCGGGTGTTACCAAGAAACAGCATCCACATCGGACACACTTCATACACGACTCACT 492
|||||||| ||||||||||||||||||||||||| ||||||||||||||||||| |||||
Sbjct 420 ATGGTCGGCTGTTACCAAGAAACAGCATCCACATTGGACACACTTCATACACGATTCACT 479
Query 493 GGCTCTCGAAAGTTCCTGATA-ACGTATGTGACAAGAAATCTATGGCTTGGAACAAAAAT 551
|||| || ||||||||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct 480 GGCTTTCCAAAGTTCCTGA-ACACGTATGTGACAAGAAATCTATGGCTTGGAACAAAAAT 538
Query 552 TACATTCAATGTAATAATTTGTTGGAAGAAGTTACCAAGGCTTACAAGGTCCAGTTCATA 611
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 539 TACAGTCAATGTAATAATTTGTTGGAAGAAGTTACCAAGGCTTACAAGGTCCAGTTCATA 598
Query 612 AAAGACATGGA-GATTTTCCTTGATGCTAGAGCG-GAGGAACTTGT-CCCTGGAGGACTA 668
|||||||||| | |||| ||||||||||||| | || |||||||| ||| ||||||||
Sbjct 599 GAAGACATGGACGCTTTT-CTTGATGCTAGAG-GAGAAGAACTTGTGCCC-GGAGGACTG 655
Query 669 ATGATTGTAATAGGAGAATGTTTGCCTGATGGTGTGTCCTTGTATGAGACATGGCAGGGT 728
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 656 ATGACTGTAATAGGAGAATGTTTGCCTGATGGTGTGTCCTTGTATGAGACATGGCAGGGT 715
Query 729 TATGTGATGGACACCATCGGTGATTGTCTTATGGATATGGCTAAATCGGGAATAACAAGC 788
| ||||||||||||| ||||||||||||||||||||||||| ||||||||||| || |||
Sbjct 716 TTTGTGATGGACACCGTCGGTGATTGTCTTATGGATATGGCCAAATCGGGAATTACGAGC 775
Query 789 GAGGAAAAGATCGATTTATTTAGTTTGCCAGTATATTTTCCTCAATTTAGTGAATTAAAG 848
||||||||||||||| | ||||||||||| || ||||||||||||||||||||||| |||
Sbjct 776 GAGGAAAAGATCGATGTGTTTAGTTTGCCTGTGTATTTTCCTCAATTTAGTGAATTGAAG 835
Query 849 GGAGAGATTGAGAAAAATGGAAGCTTTACGATTGAGCTGATGGAGACCACAAGTCATCCA 908
||||||||||||| ||||||||||||||| ||||||||||||||| ||||||| ||||||
Sbjct 836 GGAGAGATTGAGAGAAATGGAAGCTTTACAATTGAGCTGATGGAGGCCACAAGCCATCCA 895
Query 909 TTGGAGGGTAAGCCATTAACCAACGACTTCATCACTTCCACGTTTCGAGCTTTTCTCACT 968
|||||||||| ||||||||||||||| ||||||| |||||||||||||||||||||||||
Sbjct 896 TTGGAGGGTATGCCATTAACCAACGAGTTCATCATTTCCACGTTTCGAGCTTTTCTCACT 955
Query 969 ACAATCATAGAAAAACATTTTGGAGACGGTGTGGTTGATGAGCTATTCTATCGACTTGCT 1028
||||||||||||||||||||||| || |||||||| |||||||||||| |||||||||||
Sbjct 956 ACAATCATAGAAAAACATTTTGGTGATGGTGTGGTCGATGAGCTATTCGATCGACTTGCT 1015
Query 1029 AAAAAACTCTCCAATCACCCAATTGATTTTGAAATGCGGAA-AAAGCAAGTGGTGTATTG 1087
|||||||| | ||| |||||||||||||||||||||||||| ||| ||||| |||||||
Sbjct 1016 AAAAAACTGTACAAGCACCCAATTGATTTTGAAATGCGGAAGAAA-CAAGTTGTGTATTA 1074
Query 1088 TATAGTACTTAAACgaaaataaata 1112
||| |||||||||||||||||||||
Sbjct 1075 TATCGTACTTAAACGAAAATAAATA 1099
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52488357610
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5