BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G38100.1 Length=1404 Score E Sequences producing significant alignments: (Bits) Value Ahg494169 jgi|Araly1|494169|fgenesh2_kg.7__3602__AT5G38100.1 1537 0.0 > Ahg494169 jgi|Araly1|494169|fgenesh2_kg.7__3602__AT5G38100.1 Length=1099 Score = 1537 bits (832), Expect = 0.0 Identities = 1016/1105 (92%), Gaps = 12/1105 (1%) Strand=Plus/Plus Query 14 TCATAAATACGAAGCAATGTCAACATCTTCTCACATGTACCCGATGAGCAGCGGTCACGA 73 ||| ||| ||| ||||||||||||||| |||||| |||||||||||||||||||| |||| Sbjct 1 TCACAAAAACGGAGCAATGTCAACATCATCTCACTTGTACCCGATGAGCAGCGGTGACGA 60 Query 74 TCAACACAGTTACATCCATAATTCTTCATACCAAAAAGCAGCTATAAGTAGCGCTGTAGA 133 ||||||||||||||||||||| ||||||||||| |||| |||||||||| |||||| ||| Sbjct 61 TCAACACAGTTACATCCATAACTCTTCATACCAGAAAGTAGCTATAAGTGGCGCTGAAGA 120 Query 134 AAAGACAAGACGATGCATCTTTGAAAAGCTCGACCTCCAACTAAGTTCTGATTTTGGTAC 193 ||||||||||||||||||||| |||||||||||||||||||| |||||||||||| |||| Sbjct 121 AAAGACAAGACGATGCATCTTGGAAAAGCTCGACCTCCAACTGAGTTCTGATTTTAGTAC 180 Query 194 TTTTAGAATTGCGGATTTTGGATGTTCTATTGGACCGAACACGTTCCATGTTGCTCAAAG 253 |||||||||||| |||||||| ||||||| |||||| |||||||| ||||||| |||||| Sbjct 181 TTTTAGAATTGCAGATTTTGGTTGTTCTACTGGACCTAACACGTTTCATGTTGTTCAAAG 240 Query 254 TATCATTGATACAGTGAAATCCAAACGCTTGGAAGAAAGTACCGAAAATAGCCTTGTGCC 313 |||||||||||| || ||||||| || ||| |||||| | |||| ||||||||||||| Sbjct 241 TATCATTGATACGGTCAAATCCAGACACTTTAAAGAAAACAACGAACATAGCCTTGTGCC 300 Query 314 ACTAGAGTTCCAAGTTTTCTTCAATGATCAAC-CCACCAATGACTTCAACACACTCTTTA 372 || |||||||||||||||||||| |||| || ||||||||||||||||||||||||| | Sbjct 301 TCTCGAGTTCCAAGTTTTCTTCAACGATC-ACACCACCAATGACTTCAACACACTCTTCA 359 Query 373 GAACCCAACCTCTTTCTCCAGAACGCGAATATTTCTCAGTCGGAGTTCCAGGCTCTTTCT 432 ||||||||||| ||| || ||||||||||||||||| |||||||||||||||||||||| Sbjct 360 AAACCCAACCTCCTTCCCCGGAACGCGAATATTTCTCTGTCGGAGTTCCAGGCTCTTTCT 419 Query 433 ATGGTCGGGTGTTACCAAGAAACAGCATCCACATCGGACACACTTCATACACGACTCACT 492 |||||||| ||||||||||||||||||||||||| ||||||||||||||||||| ||||| Sbjct 420 ATGGTCGGCTGTTACCAAGAAACAGCATCCACATTGGACACACTTCATACACGATTCACT 479 Query 493 GGCTCTCGAAAGTTCCTGATA-ACGTATGTGACAAGAAATCTATGGCTTGGAACAAAAAT 551 |||| || ||||||||||| | |||||||||||||||||||||||||||||||||||||| Sbjct 480 GGCTTTCCAAAGTTCCTGA-ACACGTATGTGACAAGAAATCTATGGCTTGGAACAAAAAT 538 Query 552 TACATTCAATGTAATAATTTGTTGGAAGAAGTTACCAAGGCTTACAAGGTCCAGTTCATA 611 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 539 TACAGTCAATGTAATAATTTGTTGGAAGAAGTTACCAAGGCTTACAAGGTCCAGTTCATA 598 Query 612 AAAGACATGGA-GATTTTCCTTGATGCTAGAGCG-GAGGAACTTGT-CCCTGGAGGACTA 668 |||||||||| | |||| ||||||||||||| | || |||||||| ||| |||||||| Sbjct 599 GAAGACATGGACGCTTTT-CTTGATGCTAGAG-GAGAAGAACTTGTGCCC-GGAGGACTG 655 Query 669 ATGATTGTAATAGGAGAATGTTTGCCTGATGGTGTGTCCTTGTATGAGACATGGCAGGGT 728 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 656 ATGACTGTAATAGGAGAATGTTTGCCTGATGGTGTGTCCTTGTATGAGACATGGCAGGGT 715 Query 729 TATGTGATGGACACCATCGGTGATTGTCTTATGGATATGGCTAAATCGGGAATAACAAGC 788 | ||||||||||||| ||||||||||||||||||||||||| ||||||||||| || ||| Sbjct 716 TTTGTGATGGACACCGTCGGTGATTGTCTTATGGATATGGCCAAATCGGGAATTACGAGC 775 Query 789 GAGGAAAAGATCGATTTATTTAGTTTGCCAGTATATTTTCCTCAATTTAGTGAATTAAAG 848 ||||||||||||||| | ||||||||||| || ||||||||||||||||||||||| ||| Sbjct 776 GAGGAAAAGATCGATGTGTTTAGTTTGCCTGTGTATTTTCCTCAATTTAGTGAATTGAAG 835 Query 849 GGAGAGATTGAGAAAAATGGAAGCTTTACGATTGAGCTGATGGAGACCACAAGTCATCCA 908 ||||||||||||| ||||||||||||||| ||||||||||||||| ||||||| |||||| Sbjct 836 GGAGAGATTGAGAGAAATGGAAGCTTTACAATTGAGCTGATGGAGGCCACAAGCCATCCA 895 Query 909 TTGGAGGGTAAGCCATTAACCAACGACTTCATCACTTCCACGTTTCGAGCTTTTCTCACT 968 |||||||||| ||||||||||||||| ||||||| ||||||||||||||||||||||||| Sbjct 896 TTGGAGGGTATGCCATTAACCAACGAGTTCATCATTTCCACGTTTCGAGCTTTTCTCACT 955 Query 969 ACAATCATAGAAAAACATTTTGGAGACGGTGTGGTTGATGAGCTATTCTATCGACTTGCT 1028 ||||||||||||||||||||||| || |||||||| |||||||||||| ||||||||||| Sbjct 956 ACAATCATAGAAAAACATTTTGGTGATGGTGTGGTCGATGAGCTATTCGATCGACTTGCT 1015 Query 1029 AAAAAACTCTCCAATCACCCAATTGATTTTGAAATGCGGAA-AAAGCAAGTGGTGTATTG 1087 |||||||| | ||| |||||||||||||||||||||||||| ||| ||||| ||||||| Sbjct 1016 AAAAAACTGTACAAGCACCCAATTGATTTTGAAATGCGGAAGAAA-CAAGTTGTGTATTA 1074 Query 1088 TATAGTACTTAAACgaaaataaata 1112 ||| ||||||||||||||||||||| Sbjct 1075 TATCGTACTTAAACGAAAATAAATA 1099 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 52488357610 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5