BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G38110.1 Length=981 Score E Sequences producing significant alignments: (Bits) Value Ahg494166 jgi|Araly1|494166|fgenesh2_kg.7__3599__AT5G38110.1 939 0.0 > Ahg494166 jgi|Araly1|494166|fgenesh2_kg.7__3599__AT5G38110.1 Length=730 Score = 939 bits (508), Expect = 0.0 Identities = 613/664 (92%), Gaps = 5/664 (1%) Strand=Plus/Plus Query 88 GGGTCTCTCTAGATTTCTTTGAAATTTCGAGAATCTAGGGTTTCAAACTAAAATCGAGTC 147 ||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| Sbjct 1 GGGTCTCTCTAGATTTCGATGAAATTTCGAGAATCTAGGGTTTCAAACTAAAATTGAGTC 60 Query 148 CTTGAGTTTTCCCAATTTAAATCGTTATGAGCTCTATCAATATCACTAACGTCACCGTCT 207 ||||| ||| ||||||| || |||||||||| ||||||||||||||||||||||||| Sbjct 61 TTTGAGATTTGCCAATTT---TCATTATGAGCTCCATCAATATCACTAACGTCACCGTCT 117 Query 208 TGGACAATCCTGCTCCGTTTGTGAATCCATTCCAGTTCGAGATTTCTTACGAATGCTTGA 267 |||||||||| || || || ||||||||||||||||||||||| |||||||||||||||| Sbjct 118 TGGACAATCCAGCGCCATTCGTGAATCCATTCCAGTTCGAGATCTCTTACGAATGCTTGA 177 Query 268 CCTCTCTCAAAGACGATTTGGAATGGAAGCTTATATACGTAGGGTCAGCTGAAGACGAAA 327 | |||||||||||||||||||||||||||||||| |||||||| ||||||||||| |||| Sbjct 178 CTTCTCTCAAAGACGATTTGGAATGGAAGCTTATCTACGTAGGATCAGCTGAAGATGAAA 237 Query 328 CGTATGATCAAGTTTTGGAAAGTGTTCTTGTTGGTCCTGTTAACGTTGGGAACTATCGAT 387 | |||||||||||||||||||||||||||||||||||||||||||||||||| || |||| Sbjct 238 CCTATGATCAAGTTTTGGAAAGTGTTCTTGTTGGTCCTGTTAACGTTGGGAATTACCGAT 297 Query 388 TTGTGTTGCAGGCTGACTCTCCAGATCCGTTAAAGATTCGTGAGGAAGATATTATTGGTG 447 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 298 TTGTGTTACAGGCTGACTCTCCAGATCCGTTAAAGATTCGTGAGGAAGATATTATTGGTG 357 Query 448 TTACTGTGTTATTGTTGACTTGCTCATACATGGATCAAGAGTTTATAAGAGTTGGCTATT 507 | |||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 358 TAACTGTGCTATTGTTGACTTGCTCATACATGGATCAAGAGTTTATTAGAGTTGGCTATT 417 Query 508 ATGTGAACAATGACTATGATGATGAACAGCTCAGGGAAGAGCCTCCTACCAAGGTTTTGA 567 |||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 418 ATGTCAACAATGACTATGATGATGAACAACTCAGGGAAGAGCCTCCTACCAAGGTTTTGA 477 Query 568 TTGATAAGGTCCAAAGGAACATACTCACAGACAAACCTAGAGTAACTAAGTTCCCTATCA 627 || |||| |||||||||||||||||||| ||||||||| |||| |||||||||||| ||| Sbjct 478 TTAATAAAGTCCAAAGGAACATACTCACGGACAAACCTCGAGTCACTAAGTTCCCTGTCA 537 Query 628 ACTTTCATCCTGAGAATGAGCAGACTCTTGGTGATGGGCCTGCACCTACTGAACCATTTG 687 |||||||||||| | |||||||| || ||||||||||||| ||||| |||||||||||| Sbjct 538 ACTTTCATCCTGCGGATGAGCAGGCTGGTGGTGATGGGCCTCCACCTGCTGAACCATTTG 597 Query 688 CTGATTCTGTTGTAAATGGAGAAGCTCCG-GTGTTTCTTGAGCAGCCACAAAAGCTTCAG 746 |||||||||||| ||||||||||||| | ||||| |||||||| ||||||| || ||| Sbjct 598 ATGATTCTGTTGTGAATGGAGAAGCTC-GAGTGTTGGTTGAGCAGTCACAAAAACTCCAG 656 Query 747 GAGA 750 |||| Sbjct 657 GAGA 660 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 36445508652 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5