BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G38110.1
Length=981
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494166 jgi|Araly1|494166|fgenesh2_kg.7__3599__AT5G38110.1 939 0.0
> Ahg494166 jgi|Araly1|494166|fgenesh2_kg.7__3599__AT5G38110.1
Length=730
Score = 939 bits (508), Expect = 0.0
Identities = 613/664 (92%), Gaps = 5/664 (1%)
Strand=Plus/Plus
Query 88 GGGTCTCTCTAGATTTCTTTGAAATTTCGAGAATCTAGGGTTTCAAACTAAAATCGAGTC 147
||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 1 GGGTCTCTCTAGATTTCGATGAAATTTCGAGAATCTAGGGTTTCAAACTAAAATTGAGTC 60
Query 148 CTTGAGTTTTCCCAATTTAAATCGTTATGAGCTCTATCAATATCACTAACGTCACCGTCT 207
||||| ||| ||||||| || |||||||||| |||||||||||||||||||||||||
Sbjct 61 TTTGAGATTTGCCAATTT---TCATTATGAGCTCCATCAATATCACTAACGTCACCGTCT 117
Query 208 TGGACAATCCTGCTCCGTTTGTGAATCCATTCCAGTTCGAGATTTCTTACGAATGCTTGA 267
|||||||||| || || || ||||||||||||||||||||||| ||||||||||||||||
Sbjct 118 TGGACAATCCAGCGCCATTCGTGAATCCATTCCAGTTCGAGATCTCTTACGAATGCTTGA 177
Query 268 CCTCTCTCAAAGACGATTTGGAATGGAAGCTTATATACGTAGGGTCAGCTGAAGACGAAA 327
| |||||||||||||||||||||||||||||||| |||||||| ||||||||||| ||||
Sbjct 178 CTTCTCTCAAAGACGATTTGGAATGGAAGCTTATCTACGTAGGATCAGCTGAAGATGAAA 237
Query 328 CGTATGATCAAGTTTTGGAAAGTGTTCTTGTTGGTCCTGTTAACGTTGGGAACTATCGAT 387
| |||||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 238 CCTATGATCAAGTTTTGGAAAGTGTTCTTGTTGGTCCTGTTAACGTTGGGAATTACCGAT 297
Query 388 TTGTGTTGCAGGCTGACTCTCCAGATCCGTTAAAGATTCGTGAGGAAGATATTATTGGTG 447
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 298 TTGTGTTACAGGCTGACTCTCCAGATCCGTTAAAGATTCGTGAGGAAGATATTATTGGTG 357
Query 448 TTACTGTGTTATTGTTGACTTGCTCATACATGGATCAAGAGTTTATAAGAGTTGGCTATT 507
| |||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 358 TAACTGTGCTATTGTTGACTTGCTCATACATGGATCAAGAGTTTATTAGAGTTGGCTATT 417
Query 508 ATGTGAACAATGACTATGATGATGAACAGCTCAGGGAAGAGCCTCCTACCAAGGTTTTGA 567
|||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 418 ATGTCAACAATGACTATGATGATGAACAACTCAGGGAAGAGCCTCCTACCAAGGTTTTGA 477
Query 568 TTGATAAGGTCCAAAGGAACATACTCACAGACAAACCTAGAGTAACTAAGTTCCCTATCA 627
|| |||| |||||||||||||||||||| ||||||||| |||| |||||||||||| |||
Sbjct 478 TTAATAAAGTCCAAAGGAACATACTCACGGACAAACCTCGAGTCACTAAGTTCCCTGTCA 537
Query 628 ACTTTCATCCTGAGAATGAGCAGACTCTTGGTGATGGGCCTGCACCTACTGAACCATTTG 687
|||||||||||| | |||||||| || ||||||||||||| ||||| ||||||||||||
Sbjct 538 ACTTTCATCCTGCGGATGAGCAGGCTGGTGGTGATGGGCCTCCACCTGCTGAACCATTTG 597
Query 688 CTGATTCTGTTGTAAATGGAGAAGCTCCG-GTGTTTCTTGAGCAGCCACAAAAGCTTCAG 746
|||||||||||| ||||||||||||| | ||||| |||||||| ||||||| || |||
Sbjct 598 ATGATTCTGTTGTGAATGGAGAAGCTC-GAGTGTTGGTTGAGCAGTCACAAAAACTCCAG 656
Query 747 GAGA 750
||||
Sbjct 657 GAGA 660
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36445508652
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5