BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G38120.1
Length=1729
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494165 jgi|Araly1|494165|fgenesh2_kg.7__3598__AT5G38120.1 2281 0.0
> Ahg494165 jgi|Araly1|494165|fgenesh2_kg.7__3598__AT5G38120.1
Length=1738
Score = 2281 bits (1235), Expect = 0.0
Identities = 1587/1753 (91%), Gaps = 39/1753 (2%)
Strand=Plus/Plus
Query 1 AAAGAATAATGGCGAATTCTCAAAGATCATCATCTCTGATCGATCCAAGGAACGGTTTCT 60
||||||||||||||||||| ||||| |||||||||||||||||| ||||||||||
Sbjct 1 AAAGAATAATGGCGAATTCCCAAAG------ATCTCTGATCGATCCAAGAAACGGTTTCT 54
Query 61 GCACAT-CAAACTCCACATTTTACAGTAAACGCAAACCATTGGCACTTCCTTCAAAAGAA 119
||| || |||||||||||||||||||||||||||||||||| || ||||| ||||| ||
Sbjct 55 GCA-ATGCAAACTCCACATTTTACAGTAAACGCAAACCATTAGCCCTTCCATCAAACGAC 113
Query 120 TCACTCGACATCACAACATTCATCTCCTCCCAAACGTACCGTGGCAAAACCGCCTTCATA 179
|| |||||| |||||||||||||||||||||||||| ||||||||| |||||||||||||
Sbjct 114 TCGCTCGACGTCACAACATTCATCTCCTCCCAAACGCACCGTGGCACAACCGCCTTCATA 173
Query 180 GACGCAGCCACGGACCACCGCATAAGCTTCTCCGATTTATGGATG-GCCGTGGATCGTGT 238
||||| |||||||||||||||||||||||||| || ||||||| | ||||| |||||| |
Sbjct 174 GACGCTGCCACGGACCACCGCATAAGCTTCTCTGAGTTATGGA-GAGCCGTCGATCGTTT 232
Query 239 CGCCGACTGTCTCCTCCACGACGTGGGAATACGGAGAGGTGACGTGGTCCTAGTCCTCTC 298
|| ||||||||| ||||||||| ||||||| |||||||||||| ||||| ||||||||
Sbjct 233 GGCTAACTGTCTCCACCACGACGTCGGAATACAGAGAGGTGACGTTGTCCTTGTCCTCTC 292
Query 299 TCCCAACACCATCTCCATCCCCATTGTCTGCCTCTCCGTGATGTCTCTTGGCGCTGTCT- 357
||||||| |||| |||||||||||||||||||||||||| ||||||||||| || || |
Sbjct 293 TCCCAACTCCATTTCCATCCCCATTGTCTGCCTCTCCGTTATGTCTCTTGGAGCCGT-TG 351
Query 358 TAACTACCGCT-AATCCTCTCAACACCGCTAGTGAAATCT-TAAGACAAATCGCGGATAG 415
| || || | | |||||||||||||| || ||||||||| | ||||||||||| |||||
Sbjct 352 TCACCACTG-TAAATCCTCTCAACACAGCCGGTGAAATCTCT-AGACAAATCGCCGATAG 409
Query 416 CAATCCAAAACTCGCCTTCACAA-CACCGGAACTGGCTCCCAAAATCGCCAGTTCCGGTA 474
|||||||| ||||| ||||||| || | || |||||| ||||| | ||| |||| | ||
Sbjct 410 TAATCCAAAGCTCGCTTTCACAACCA-CAGAGCTGGCTTCCAAACTTGCCGGTTCTGATA 468
Query 475 TCTCTATCGTCCTCGAGCGCGTAGAAGACACTCTACGCGTTCCGA-GAGGACTCAAAGTG 533
|||| ||| ||||||||||||||| |||||||||| ||| ||| | || ||||||||||
Sbjct 469 TCTCCATCCTCCTCGAGCGCGTAGTAGACACTCTATGCGCTCC-AGGACGACTCAAAGTT 527
Query 534 GTTGGGAATCTAACTGAAATGATGAAGAAAGAACCAAGTGGACAAGCAG---TCAGAAAC 590
||||||| ||||| ||| ||||||||||||||||| || ||||||| || ||||||||
Sbjct 528 GTTGGGATTCTAAGTGAGATGATGAAGAAAGAACCTAGGGGACAAGAAGTCATCAGAAAC 587
Query 591 CAAGTTCATAAAGACGACACGGCGATGTTGCTTTACTCCTCGGGGACGACGGGACGAAGC 650
| |||| | ||||||||||| ||||| ||||||||||| || ||||| ||||||| ||||
Sbjct 588 CGAGTTAACAAAGACGACACAGCGATATTGCTTTACTCGTCCGGGACAACGGGACAAAGC 647
Query 651 AAAGGAGTGAATTCGTCTCACGGGAACTTAATAGCACACGTGGCGAGATACATCGCGGAG 710
||||||||||||||||| |||||||||||||||||||| || || |||||||||||||||
Sbjct 648 AAAGGAGTGAATTCGTCCCACGGGAACTTAATAGCACATGTCGCAAGATACATCGCGGAG 707
Query 711 CCATTCGAGCAGCCACAACAGACCTTCATTTGCACTGTTCCGTTGTTCCACACTTTTGGT 770
||||||||||||||||||||||||||||||||||||||||| || |||||||| ||||||
Sbjct 708 CCATTCGAGCAGCCACAACAGACCTTCATTTGCACTGTTCCATTTTTCCACACCTTTGGT 767
Query 771 TTACTAAACTTCGTTTTGGCCACCTTAGCGTTAGGTACGACCGTTGTCATCCTCCCGAGG 830
||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||
Sbjct 768 TTACTAAACTTCGTTTTAGCCACCTTAGCGTTAGGTTCGACCGTTGTCATCCTCCCGAGG 827
Query 831 TTTGACCTCGGAGAGATGATGGCGGCTGTCGAGAAATACAGAGCGACGACTCTGATTCTC 890
|| |||||||| ||||||||||| || | ||||||||||||||| || ||||||||||||
Sbjct 828 TTCGACCTCGGGGAGATGATGGCAGCGGCCGAGAAATACAGAGCCACTACTCTGATTCTC 887
Query 891 GTGCCGCCAGTTTTAGTAACTATGATAAACAAAGCGGATCAAATAATGAAGAAGTACGAC 950
||||||||||||||||||||||||||||||| ||||||| | |||||| ||||||||||
Sbjct 888 GTGCCGCCAGTTTTAGTAACTATGATAAACAGAGCGGATGAGATAATGGCGAAGTACGAC 947
Query 951 GTGAGCTTCTTGAGAACGGTGCGGTGCGGTGGAGCACCTTTGAGCAAGGAAGTTACTCAA 1010
||||||||||||||||| |||||||||||||||||||| || ||||||||||||||| ||
Sbjct 948 GTGAGCTTCTTGAGAACAGTGCGGTGCGGTGGAGCACCGTTAAGCAAGGAAGTTACTGAA 1007
Query 1011 GGGTTTATGAAGAAATATCCAACGGTTGATGTTTATCAAGGATACGCATTGACGGAATCT 1070
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1008 GGGTTTATGAAGAAATATCCAACGGTTGATGTTTATCAAGGATACGCATTGACGGAATCT 1067
Query 1071 AACGGTGCAGGAGCTTCGATAGAATCAGTGGAGGAGAGTCGGAGGTACGGTGCGGTGGGG 1130
||||||||||||||||||||||| |||||||| ||||||||||| |||||||||||||||
Sbjct 1068 AACGGTGCAGGAGCTTCGATAGATTCAGTGGAAGAGAGTCGGAGATACGGTGCGGTGGGG 1127
Query 1131 TTGTTGTCATGTGGTGTAGAAGCGAGGATTGTGGATCCGAATACGGGTCAGGTCATGGGT 1190
|||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||
Sbjct 1128 TTGTTGTCATGTGGTGTAGAAGCGAGGATTGTGGATCCAAATACGGGTTGGGTCATGGGT 1187
Query 1191 TTGAACCAAACGGGCGAACTTTGGCTTAAAGGGCCTTCTATCGCCAAAGGTTATTTCAGG 1250
||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| |||
Sbjct 1188 TTGAACCAAACGGGCGAGCTTTGGCTTAAAGGGCCTTCTATTGCCAAAGGTTATTTTAGG 1247
Query 1251 AATGAAGAAGAAATTATAACTTCAGAAGGATGGCTTAAAACAGGAGATCTATGCTATATA 1310
|| ||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1248 AACGAAGAAGAACTTATAACTTCAGAAGGATGGCTTAAAACAGGAGATCTTTGCTATATA 1307
Query 1311 GACAACGATGGATTTCTTTTTATCGTTGATCGATTGAAAGAGCTTATCAAATACAAAGGT 1370
||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1308 GACGACGATGGATTTCTTTTTATCGTTGATCGATTGAAAGAGCTAATCAAATACAAAGGT 1367
Query 1371 TACCAGGTACCTCCAGCTGAACTAGAGGCTCTCTTACTAAACCATCCAGATATTCTCGAT 1430
|||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||
Sbjct 1368 TACCAGGTACCTCCAGCTGAACTAGAGGCTCTTTTACTAAGCCATCCAGATATTCTCGAT 1427
Query 1431 GCAGCCGTTATTCCGTTTCCAGATAAAGAAGCAGGACAATTTCCGATGGCTTACGTAGCA 1490
|||||||||||||||||||||||||||||||||||||||| |||||||||||| || |||
Sbjct 1428 GCAGCCGTTATTCCGTTTCCAGATAAAGAAGCAGGACAATATCCGATGGCTTATGTGGCA 1487
Query 1491 CGAAAGCCTGAG-AGTAATCTTTGTGAGAA-AAAGGTTATCGACTTTATTTCTAAACAGG 1548
|||||| ||| | || ||||| |||||||| |||| |||| |||||||||||||||||||
Sbjct 1488 CGAAAGTCTG-GCAGCAATCTCTGTGAGAAGAAAG-TTATTGACTTTATTTCTAAACAGG 1545
Query 1549 TGGCACCATATAAGAAAATAAGAAAAGTCGCATTTATAGACTCTATACCAAAGACTCCAT 1608
||||||||||||||||||||||||| || |||||||||||||| ||||||||||||||||
Sbjct 1546 TGGCACCATATAAGAAAATAAGAAAGGTTGCATTTATAGACTCAATACCAAAGACTCCAT 1605
Query 1609 CGGGCAAAACACTTCGCAAGGATCTAATCAAATTTGCCATTTCAAAAATTTAAAAGAAT- 1667
| |||||||||||||||||||||||| |||||||||||||||| ||| |||||||||||
Sbjct 1606 CAGGCAAAACACTTCGCAAGGATCTACTCAAATTTGCCATTTCTAAACTTTAAAAGAATT 1665
Query 1668 -C-A--C--TATTTTGTCATTTTTATTTGTATGA-----ATTTCTGACATAATAAAAGAG 1716
| | | || |||||||||||||||||||||| |||| ||||||||||||||||
Sbjct 1666 GCTAGACGCTAGTTTGTCATTTTTATTTGTATGATTTTTATTTGTGACATAATAAAAGAG 1725
Query 1717 AAGTTATATCCGC 1729
|| ||||||||||
Sbjct 1726 AATTTATATCCGC 1738
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64867687235
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5