BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G38130.1
Length=1463
Score E
Sequences producing significant alignments: (Bits) Value
Ahg330642 jgi|Araly1|330642|fgenesh1_pm.C_scaffold_7002869 1520 0.0
Ahg948067 jgi|Araly1|948067|scaffold_704296.1 845 0.0
> Ahg330642 jgi|Araly1|330642|fgenesh1_pm.C_scaffold_7002869
Length=1260
Score = 1520 bits (823), Expect = 0.0
Identities = 1133/1278 (89%), Gaps = 39/1278 (3%)
Strand=Plus/Plus
Query 94 AGAAGTGACCGTGATATCTTCAA-CTATGGTACGACCCGAAAACATAAACCAAACGGGTC 152
|||||| |||||| | ||||||| | ||||| ||||||||||||||||||| | ||||||
Sbjct 6 AGAAGTAACCGTGCTTTCTTCAAGC-ATGGTGCGACCCGAAAACATAAACCGATCGGGTC 64
Query 153 GTC---AAAAAATCCATCTAACTCCACATGATCTTGACCTTCTTTATCTTTTTTATCCTC 209
||| |||| |||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 65 GTCGTGAAAAGATCCATCTAACTCCACATGATCTTGACCTTCTTTATCTTTTTTATCATC 124
Query 210 AAAGAGGTCTACTCTTCCACAAACCCGACCCGGAAAACAGTATCATTCCTCGATTAATGG 269
|||||||||| |||||||||||||| |||| ||||||| || ||||||||||||||| ||
Sbjct 125 AAAGAGGTCTTCTCTTCCACAAACCGGACCTGGAAAACCGTTTCATTCCTCGATTAACGG 184
Query 270 CTTCTCTTTCCACTGCCTTAGAGATTTATTTCCCGTTTGCTGGTCGTCTCGTCAAAGTAA 329
||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 185 GTTCTCTTTCGACTGCCTTAGAGATTTATTTCCCGTTCGCTGGTCGTCTCGTCAAAGTAA 244
Query 330 ACAATCACGAAGATGATACGGTGTCGTTTTACATCGACTGTGATGGTTTGGGTGCTAAAT 389
||||||| ||||||||||||||||| |||||||||||||||||||||| |||||| ||||
Sbjct 245 ACAATCAAGAAGATGATACGGTGTCCTTTTACATCGACTGTGATGGTTGGGGTGCCAAAT 304
Query 390 TCGTCCATGCGAAAGCCGAATCTATCACCGTGAATGATGTCC-TTCAATCTCATGGGTCT 448
| ||||| |||||||| |||||| ||||| ||||||||| || ||||||||||||| | |
Sbjct 305 TTGTCCACGCGAAAGCTGAATCTGTCACCATGAATGATG-CCTTTCAATCTCATGGTTAT 363
Query 449 GTTCCTTATTTCATATCGA-AATTTTTCCCCGCGAACAATGTCCAAAGCCGTGATGCCCT 507
|||||| |||||||| | | |||||||||| |||||||||||||||||||||||||||||
Sbjct 364 GTTCCTGATTTCATA-CCACAATTTTTCCCAGCGAACAATGTCCAAAGCCGTGATGCCCT 422
Query 508 TGTCTCGGAGCCCTTGCTTGCGTTGCAAGTCACCGAGATGAAAGATGGAGTGTTCATTAG 567
||||||||||||||||||||| |||||| |||||||||||||||||||| ||||||||||
Sbjct 423 TGTCTCGGAGCCCTTGCTTGCATTGCAATTCACCGAGATGAAAGATGGAATGTTCATTAG 482
Query 568 TTTTGGTTACAATCACATGGTGGCCGATGGT-ACTTGCTTCTGGAAGTTCTTTCACACTT 626
|||||||||| | |||||||||||||||||| | || | | | ||| ||| |
Sbjct 483 TTTTGGTTACTACCACATGGTGGCCGATGGTCCCATG-ATAAGCCCG-AATTTAACAAAT 540
Query 627 GGTCCAAGATTTGTCTGAA-TGGTTCGGATC-CTAGTATTC-AGTCTATTGTTCTCAAAG 683
||| | ||| | ||| | ||| | | || | | | || | ||| ||| || |
Sbjct 541 GGTTCTTCCTTT-T-GGAATTTCTTC-CA-CACTTG-GTCCAAG-AT-TTG-TCTGAATG 592
Query 684 ATTGGTT-TTGTGACGGGATCGATTACCCGGTACATGTTCCGGTTTTAGAGATGGAGACG 742
||||||| || ||| ||||||||||||||| ||||| |||||||||||||||| |||||
Sbjct 593 ATTGGTTCTT-TGAAGGGATCGATTACCCGATACATATTCCGGTTTTAGAGATTGAGACT 651
Query 743 CTACCACGTTGGGAACCTTCAACTAAAGAGAGAGTTTTTCACTTGTCAAAGAAGAACATT 802
||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 652 CTACCACGTTGTGAACCTTCAACTAAAGAGAGAGTTTTTCACTTCTCAAAGAAGAAAATT 711
Query 803 TTAGATCTCAAAGCGAAAGCCAACAACGAAATTGACACCAAT-GATCTGAAAATCTCGTC 861
| ||||||||||| |||||||||| ||||||||| |||| || ||||||||||| |||||
Sbjct 712 TCAGATCTCAAAGTGAAAGCCAACTACGAAATTGGCACC-ATGGATCTGAAAATATCGTC 770
Query 862 TCTTCAAGCGGTTGTGGCATATCTATGGCTATCAATCATCAGACACAGTGGTCTAAACCG 921
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 771 GCTTCAAGCGGTTGTGGCATATCTATGGCTATCAATCATCACACACAGTGGTCTAAACCG 830
Query 922 GGAAGAAGAAACACAATGCAATGTAGCGGCGGATATGAGACCGAGGCTAAACCCTCTTCT 981
|||||||||| |||||||| | ||||||||||||||||| | |||||||||||| |||
Sbjct 831 AGAAGAAGAAATGCAATGCAAAGGAGCGGCGGATATGAGACAGCGGCTAAACCCTCCTCT 890
Query 982 CAAGAAAGAGTGTTTTGGGAATGTAACCAATCTCGCAACGGCTACAACCACTGTGGGAGA 1041
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 891 CAAGAAAGAGTGTTTTGGGAATGTAACCAATCTCGCAACGGCTACAACCACTGTGGGAGA 950
Query 1042 GCTGTTGGATCATGGGCTAGGCTGGACTGCTTTGCAAATAAGTAAATCCGTAA-GGTCAG 1100
||||||||||| | |||||||| |||||||||||||||||||||| | |||| ||| ||
Sbjct 951 GCTGTTGGATCGTAGGCTAGGCAAGACTGCTTTGCAAATAAGTAAAACGGTAAAGGT-AG 1009
Query 1101 AAACAAATGAGAGTTATGAAGTTTTTGCAAAGAATTGGGTTAGAAATGTTAAGA-GACCA 1159
|||| ||||||||||||||| | |||||||||||||||||||||||||||||| | |||
Sbjct 1010 AAACGAATGAGAGTTATGAAAATATTGCAAAGAATTGGGTTAGAAATGTTAAGATG-CCA 1068
Query 1160 AAAACATC-GTTTGGAAGTAGATTGGCTAACAATTCTTTGATCATCTCAAGCTCTCCACG 1218
|||||||| ||| ||||| | |||||||| ||||||||||||||| ||||||| |||||
Sbjct 1069 AAAACATCAGTT-GGAAG-A--TTGGCTAAGAATTCTTTGATCATCACAAGCTCCCCACG 1124
Query 1219 GTTTGAAGTGTACGAA-CATGATTTCGGTTGGGGAAAACCAATCGCGGCTCGAGCTGGAC 1277
||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1125 GTTTGAAGTGTAC-AATCATGATTTCGGTTGGGGAAAACCAATCGCGGCTCGAGCTGGAC 1183
Query 1278 CGGCTGATGGTGCTGGTGGTATGCTTGTAATGTTTCGAGGAGTTGAAGAAGGGAGTATTG 1337
||||| ||||| |||||||||||||||| ||||||| ||||||||||| ||||||||||
Sbjct 1184 CGGCTAATGGTACTGGTGGTATGCTTGTGGTGTTTCGGGGAGTTGAAGAGGGGAGTATTG 1243
Query 1338 ATGTTCATGCGACCTTAA 1355
|||| |||||||||||||
Sbjct 1244 ATGT-CATGCGACCTTAA 1260
Score = 73.1 bits (39), Expect = 5e-12
Identities = 49/54 (91%), Gaps = 0/54 (0%)
Strand=Plus/Plus
Query 594 ATGGTACTTGCTTCTGGAAGTTCTTTCACACTTGGTCCAAGATTTGTCTGAATG 647
||||| ||| ||| ||||| ||||| ||||||||||||||||||||||||||||
Sbjct 539 ATGGTTCTTCCTTTTGGAATTTCTTCCACACTTGGTCCAAGATTTGTCTGAATG 592
> Ahg948067 jgi|Araly1|948067|scaffold_704296.1
Length=1356
Score = 845 bits (457), Expect = 0.0
Identities = 1060/1346 (79%), Gaps = 62/1346 (5%)
Strand=Plus/Plus
Query 82 ACGCAAAATGGTAGAAGTGACCGTGATATCTTC-AACTATGGTACGACCCGAAAACATAA 140
||||||||||| |||||||| |||| | ||||| | | || || || ||| |||| ||||
Sbjct 14 ACGCAAAATGGCAGAAGTGATCGTGCTTTCTTCGAGC-ATTGTTCGTCCCAAAAAGATAA 72
Query 141 ACCAAA-CGGGTCGTCA-AAAAATCCATCTAACTCCACATGATCTTGACCTTCTTTATCT 198
| |||| ||| |||| | ||| |||||| |||||||| |||||||| | |||||| || |
Sbjct 73 A-CAAATCGGATCGT-ACAAAGATCCATTTAACTCCATATGATCTTAAACTTCTTAAT-T 129
Query 199 TT-TTTATCCTCAAAGAGGTCTACTCTT-CCACAAACCCGAC-CCGGAAAACAGTATCAT 255
|| |||||||||||||||||| ||||| ||| ||||||||| || || || |||||
Sbjct 130 TTGCTTATCCTCAAAGAGGTCTTCTCTTCCCA-AAACCCGACGACGTAACCCA-TATCA- 186
Query 256 TCC-TCGATTAATGGCTTCTCTTTCCACTGCCTTAGAGATTTATTTCCCGTTTGCTGGTC 314
||| |||||||| ||| |||||||| | ||| || || || || |||||||| |||||||
Sbjct 187 TCCATCGATTAAAGGCCTCTCTTTCGATTGCATTGGAAATCTACTTCCCGTTCGCTGGTC 246
Query 315 GTCTCGTCAAAGTAAACAATCACGAAGATGATACGGTGTCGTTTTACATCGACTGTGATG 374
||||||||||||| ||||| || |||||| | || |||||||||||||||||||| ||
Sbjct 247 GTCTCGTCAAAGTGAACAACCATGAAGATAACACAGTGTCGTTTTACATCGACTGCGACA 306
Query 375 GTTTGGGTGCTAAATTCGTCCATGCGAAAGCCGAATCTATCACCGTGAATGATGTCCTTC 434
| | || |||| |||||| || || |||| |||||| || ||| || ||| ||||||
Sbjct 307 GCTCCGGCGCTAGATTCGTTCACGCCAAAGTCGAATCCGTCTCCGCAAACGATTTCCTTC 366
Query 435 AATC-TCATGGGTCTGTTCCT-TATTTCATATCGAAATTT-TTCCCCGCGAACAATGTCC 491
|| | | ||| ||||||||| |||| | | | ||| || || || ||| || ||
Sbjct 367 AA-CATTATGACTCTGTTCCTGAATTT-A-AAAGGTGTTTCTTTCCTGCTAACGATCTCA 423
Query 492 AAAGCCGTGATGCCCTTGTCTCGGAGCCCTTGCTTGCGTTGCAAGTCACCGAGATGAAAG 551
||||| ||||| |||||| |||||||||||||||||||||||||||||||| || |
Sbjct 424 AAAGCTTTGATG---GTGTCTCTGAGCCCTTGCTTGCGTTGCAAGTCACCGAGATTAAGG 480
Query 552 ATGGAGTGTTCATTAGTTTTGGTTACAATCACATGGTGGCCGATGGTACTTGCTTCTGGA 611
||||| | ||||| ||||||||||||||||||||||||||||||||| ||| ||||||||
Sbjct 481 ATGGATTTTTCATCAGTTTTGGTTACAATCACATGGTGGCCGATGGTTCTTCCTTCTGGA 540
Query 612 AGTTCTTTCACACTTGGTCCAAGATTTGTCTGAATGGTTCG-GATCCTAGTATTCAGTCT 670
| ||||| ||||||||||| ||||| ||| ||||||||||| | || | || ||| ||
Sbjct 541 ATTTCTTCCACACTTGGTCTAAGATCTGTATGAATGGTTCGAGTTCGGA-TACTCACCCT 599
Query 671 ATTGTTCTCAAAGATTGGTTT-TGTGACGG-GATCGATTACCCGGTACATGTTCCGGTTT 728
||||||||||||||||||| | |||| | |||| |||||| | ||| | || ||||
Sbjct 600 CTTGTTCTCAAAGATTGGTTCCT-TGACAAAG-TCGAATACCCGATCCATATGCCAGTTT 657
Query 729 TAGAGATGGAGACGCTACCACGTTGGGAACCTTC-AACTAAAGAGAGAGTTTTTCACTTG 787
||| | || || || |||| | || ||| ||| ||||||||||||||||||||||||
Sbjct 658 CAGAAACGGGGAGGCCACCAAGATGTGAAA-TTCCAACTAAAGAGAGAGTTTTTCACTTC 716
Query 788 TCAAAGAAGAACATTTTAGATCTCAAAGCGAAAGCCAACAACGAA-ATTGACA-CCAATG 845
|||||| ||| || | |||||| || ||| |||||||| || | ||| || ||| ||
Sbjct 717 ACAAAGACGAATATCTCAGATCTTAAGGCGGAAGCCAACG-CGGATATT-ACTTCCACTG 774
Query 846 ATCTGAAAATCTCGTCTCTTCAAGCGGTTGTGGCAT-ATCTATGGCTATCAATCATCAGA 904
|| ||||||| ||||| |||||||| ||| |||| | |||||||| ||||||| |||| |
Sbjct 775 ATATGAAAATATCGTCCCTTCAAGCTGTTTTGGC-TCATCTATGGATATCAATTATCAAA 833
Query 905 CACAGTGGTCTAAACCGGGAAGAAGAAACACAATGCAATGTAGCGGCGGATATGAGACCG 964
||||||||| ||||||| |||||||| ||||| || | |||||| || ||||||||| |
Sbjct 834 CACAGTGGTTTAAACCGAGAAGAAGATACACATTGTATTGTAGCTGCAGATATGAGAAGG 893
Query 965 AGGCTAAACCCTCTTCTCAAGAAAGAGTGTTTTGGGAATGTAAC-CAATCTCGCAACGGC 1023
||| ||||||||| ||| ||||||||||||| |||||||| || || || || | ||
Sbjct 894 AGGTTAAACCCTCCTCTTGAGAAAGAGTGTTTCGGGAATGTGACTCA-TCAAGCGATTGC 952
Query 1024 TACAACC-ACTGTGGGAGAGCTGTTGGATCATGGGCTAGGCTGGACTGCTTTGCAAAT-A 1081
||| || | ||||||||| | ||||||||||| ||||||||| | ||||||||||| |
Sbjct 953 AACAGCCGAG-GTGGGAGAGATCTTGGATCATGGACTAGGCTGGGCCGCTTTGCAAATTA 1011
Query 1082 AGTAAATCCG-TAAGGTCAGAAACAAATGAGAGTTATGAAGTT-TTTGCAAAGAATTGGG 1139
| |||| | | | || || ||| ||||| | ||| ||| ||||| |||||||||
Sbjct 1012 A-TAAA-CAGGTGAGAACACTAACGAATGAAAATTAC-AAGGCATTTGCGGAGAATTGGG 1068
Query 1140 TTAGAAATGTTAAGAGACCAAAAACATCGTT-TGGAA---GTAGATTGGCTAACAATTCT 1195
|||||||||| ||| ||||||||| || ||||| ||||| |||| | | || |
Sbjct 1069 TTAGAAATGTGAAGTTCCCAAAAACAA-GTGGTGGAATTAGTAGAAAGGCTGATACTTAT 1127
Query 1196 TTGATCATCTCAAGCTCTCCACGGTTTGAAGTGTACGAACAT-GATTTCGGTTGGGGAAA 1254
||||| | ||||||||||| |||||||||||||||| || |||||||||||||||||
Sbjct 1128 TTGATTGCCACAAGCTCTCCATGGTTTGAAGTGTACGA-CAACGATTTCGGTTGGGGAAA 1186
Query 1255 ACCAATCGCGGCTCGAGCTGGACCGG-CTGATGGTG-CTGGTGGTATG-CTTGTAATGTT 1311
|||||| || | |||||||| ||||| | ||||| | ||| | | |||||| | ||
Sbjct 1187 ACCAATTGCAGTTCGAGCTGAACCGGGCA-ATGGTATC-GGTA-TCTCACTTGTAGTTTT 1243
Query 1312 TCGAGGAGTTGAAGAAGGGAGTATTGATGTTCATGCGACCTTAAA-TTCTTCTTTATGGT 1370
| | || |||||||||| |||||||||||| |||||||| || || | | | ||||
Sbjct 1244 TAGGGGTCTTGAAGAAGGCAGTATTGATGTTAATGCGACCATACCCTTATCCATG-TGGT 1302
Query 1371 CTGATGTACTAGTGAACCTGTTGACC 1396
| ||||||||||||||| | ||||||
Sbjct 1303 CCGATGTACTAGTGAACTTATTGACC 1328
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54735682065
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5