BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G38140.1
Length=890
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494163 jgi|Araly1|494163|fgenesh2_kg.7__3596__AT5G38140.1 704 0.0
> Ahg494163 jgi|Araly1|494163|fgenesh2_kg.7__3596__AT5G38140.1
Length=788
Score = 704 bits (381), Expect = 0.0
Identities = 472/514 (92%), Gaps = 13/514 (3%)
Strand=Plus/Plus
Query 216 TTCGATCTAATCATCCTGAAACAAGCAAGATCGAGGGGGTCTCTTCGTTGGACACAGCTC 275
|||| ||||||||||||| |||||||||| ||||||| |||||| |||||||||||||
Sbjct 173 TTCGGTCTAATCATCCTGCGACAAGCAAGAACGAGGGGACCTCTTCATTGGACACAGCTC 232
Query 276 TGAAGGTGTTTTGGAATAATCAAAGGGAGCAGCTAGGAAACTTTGCAGGCCAAACTCATT 335
|||||||||||||||||||||||||||| || |||||||||||||||||||||||| |||
Sbjct 233 TGAAGGTGTTTTGGAATAATCAAAGGGAACAACTAGGAAACTTTGCAGGCCAAACTTATT 292
Query 336 TGCCGCTATCTAGGGTCAGAAAGATTTTGAAATCTGATCCTGAAGTCAAGAAGATAAGCT 395
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 293 TGCCGCTATCTAGGGTCAGAAAGATTTTGAAATCCAATCCTGAAGTCAAGAAGATAAGCT 352
Query 396 GTGATGTTCCTGCTTTGTTTTCGAAAGCCTGTGAATACTTCATTCTAGAGGTAACATTAC 455
||||||||||||| |||||||||||||| ||||||||||| ||||||||| |||||||||
Sbjct 353 GTGATGTTCCTGCCTTGTTTTCGAAAGCTTGTGAATACTTTATTCTAGAGCTAACATTAC 412
Query 456 GAGCTTGGATGCATACTCAATCATGCACTCGTGAGACCATCCGGCGTTGTGATATCTTCC 515
|||| |||||| |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 413 GAGCATGGATGAATACTCAATCATGCACTCGTCAGACCATCCGGCGTTGTGATATCTTCC 472
Query 516 AGGCCGTAAAGAACTCAGGAACTTATGATTTCCTGATTGATCGTGTCCCTTTTGGACCGC 575
|||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||
Sbjct 473 AGGCCGTAAAGAACTCAGGAACTTATGATTTCCTGATTGATCATGTTCCTTTTGGACCGC 532
Query 576 ACTGTGTCACCCATCAGGGTGTGC-AACCTCCTGCTGAAATGATTTTGCCGGATATGAAT 634
|||||||| |||||||||||||| ||| |||||||||||||||||||||||| ||||||
Sbjct 533 ACTGTGTCGTCCATCAGGGTGTGCCAAC-TCCTGCTGAAATGATTTTGCCGGACATGAAT 591
Query 635 GTTCCAATCGATATGGACCAGATTGAGGAGGAGAATATGA-TGGAAGAGCGCTCTGTC-- 691
||||||||||||||||||||||||||| |||||||| ||| || ||||| ||||| ||
Sbjct 592 GTTCCAATCGATATGGACCAGATTGAGCAGGAGAATCTGACTG-AAGAGTGCTCTATCAA 650
Query 692 -----G-GG-TTTGACCTCAACTGTGATCTCCAG 718
| || ||||||||||||| ||||||||||
Sbjct 651 TAATAGAGGGTTTGACCTCAACTCTGATCTCCAG 684
Score = 272 bits (147), Expect = 3e-72
Identities = 166/175 (95%), Gaps = 1/175 (1%)
Strand=Plus/Plus
Query 1 TGGTTCTTTCGTATGTATGCCTCACGAGCTCCACGAGGTATATCCTTACTAACGTCTCCA 60
||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1 TGGTTCTTTCGTATGTACGCCTCACGAGCCCCACGAGGTATATCCTTACTAACGTCTCCA 60
Query 61 TATATAGAGAACCCTTGTTCTTGCCAAACTCTACATCTTCAAAGATTTTTCATCATCTGT 120
|||||||| | |||| ||||||||||| |||||||||||||||||||||||||||||| |
Sbjct 61 TATATAGACACCCCT-GTTCTTGCCAACCTCTACATCTTCAAAGATTTTTCATCATCTCT 119
Query 121 TGTGAAATATAACATGAGGAGGCCAAAGTCATCTCACGTCAGGATGGAACCTGTT 175
||||||||||||||||||||||||||||||||||| | |||||||||||||||||
Sbjct 120 TGTGAAATATAACATGAGGAGGCCAAAGTCATCTCGCATCAGGATGGAACCTGTT 174
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32976323205
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5