BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G38150.1
Length=1766
Score E
Sequences producing significant alignments: (Bits) Value
Ahg356183 jgi|Araly1|356183|fgenesh1_pg.C_scaffold_7003356 2159 0.0
Ahg908217 jgi|Araly1|908217|Al_scaffold_0002_1298 422 5e-117
> Ahg356183 jgi|Araly1|356183|fgenesh1_pg.C_scaffold_7003356
Length=1695
Score = 2159 bits (1169), Expect = 0.0
Identities = 1528/1697 (90%), Gaps = 42/1697 (2%)
Strand=Plus/Plus
Query 88 TACCAGTCGTTAAGTCGTCTTTAGTTGTGGAGGCTATACATATGTCAAGAAAGAAACTTG 147
||||| | ||||||||||||||||||||||||||||| || ||||||| |||||||||||
Sbjct 23 TACCAATTGTTAAGTCGTCTTTAGTTGTGGAGGCTATGCACATGTCAATAAAGAAACTTG 82
Query 148 GTTG-GTACAATGAGAGTAGAAGAGATTCAGAGACTGTAAAAGCTAGAGTAGAAGCGGGA 206
| || |||| ||||||| ||| ||||||||||||||| ||||||||||| ||||||||||
Sbjct 83 G-TGTGTACGATGAGAGCAGAGGAGATTCAGAGACTGCAAAAGCTAGAGCAGAAGCGGGA 141
Query 207 TTGTCCGAGGTAAAGAAGTCGGTGGAGGAGCTCGCGTTACTGATAAAAAGGTCGAATCGT 266
|||||||||||||||||||| | ||| ||||| ||| | | || ||| |||
Sbjct 142 TTGTCCGAGGTAAAGAAGTC----G-GGA-------TTACTTATAGAGATGTTGAACCGT 189
Query 267 TCTGCGGGGTTTCAGGAAAAGGATATGGAAGTGTTGAAGATGGAGGAAAAGTATGCGGAA 326
| ||| |||| ||||||| |||||||||||||||||||| ||||||||||| ||||||
Sbjct 190 GGTCCGGAGTTTAAGGAAAAAGATATGGAAGTGTTGAAGATCGAGGAAAAGTACGCGGAA 249
Query 327 GTTATGAGAGTTTTGGAGGTTGTGAAAGAAGAAGTGAGTAGAGTGAAGCTTGATGTATCA 386
||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||
Sbjct 250 GTTATGAGAGTTTTGGAGGCTGTGAAAGAAGAAGTGAGTAGAGTGAAGCTTAATGTATCA 309
Query 387 TCTGTTTTGATAGAGAGAGTTGCAGCAGAGGAAA-AAGTCGAAGAACTGCGGTTTAAAAC 445
||||||||| ||||||| ||||||| || |||| ||||||||||| |||||||||||||
Sbjct 310 TCTGTTTTGGGAGAGAGAATTGCAGCGGA-GAAAGAAGTCGAAGAATTGCGGTTTAAAAC 368
Query 446 GGAAGGGGGTTTGAGATTGTTGGAGAGTCTGAAGAAGGAAATCGAGGTTGCGAATGAGGA 505
||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 369 GGAAGGGAATTTGAGATTGTTGGAGAGTCTTAAGAAGGAAATCGAGGTTGCGAATGAGGA 428
Query 506 ACATTTGATGGTTGCATTGGGAAAGATTGAGGCGTTGAAAGGATATAAAGAGATAGAAAG 565
|||||||| || ||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 429 ACATTTGACGGCTGCATTGGGAAAGATTGAGGCGTTGAAGGGATATAAAGAGATAGAAAG 488
Query 566 ACAGAGAGAAGGGAAAGCTATAAAGGTTTTGGATTTGTTGGTGGAAAGGAATAAGAGAAT 625
|||||||||||||||||| | |||||||||||||||||||||||||||||||||||||
Sbjct 489 GCAGAGAGAAGGGAAAGCTGTTGAGGTTTTGGATTTGTTGGTGGAAAGGAATAAGAGAAT 548
Query 626 CAAGAACATGTTGGAAGAGGCGGAAAGATCGAAGGATATTGA-AATTGAGTTGTTTGAGA 684
|||||| |||||||| |||||||||||||||||||||||||| || ||||||||||||||
Sbjct 549 CAAGAAAATGTTGGACGAGGCGGAAAGATCGAAGGATATTGAGAA-TGAGTTGTTTGAGA 607
Query 685 CGAGTACGGATGTTGAGATGTTGGAAACACAGTTAAAGCTTTTCAAGAAAATGGAGAGGA 744
||| | ||||||||||||||||||||| |||| |||||||||||||||||||||||||||
Sbjct 608 CGAATTCGGATGTTGAGATGTTGGAAATACAGCTAAAGCTTTTCAAGAAAATGGAGAGGA 667
Query 745 GAGTTCAGGGGAGAGATAGTAGTAGTATGTCGAGATCAAACCGTTCTTTTGGAAGAGGGA 804
||||||||||||||| | ||||| ||||||||||||||||| ||||||||||||||||
Sbjct 668 GAGTTCAGGGGAGAG--A-CAGTAGCATGTCGAGATCAAACCGGTCTTTTGGAAGAGGGA 724
Query 805 AGTATAGTTTATCGGTTTTGAAAGAAGTGACTGAAG-G---GAA--G---AAGGAGGAAC 855
|||||||||||||||| |||||||||||||||||| | ||| | |||||||| |
Sbjct 725 AGTATAGTTTATCGGTGCTGAAAGAAGTGACTGAAGCGACTGAAGCGAAAAAGGAGGAGC 784
Query 856 TTGCTTCTGTTAAAGTAGAGATCTTCAGGGTCATGACAGTAATGGATGCGTTGAGGAATG 915
||||||||||||| ||||| ||||| ||| ||||||| |||||||||||||||||| |||
Sbjct 785 TTGCTTCTGTTAATGTAGAAATCTTTAGGATCATGACGGTAATGGATGCGTTGAGGGATG 844
Query 916 AGATTATCCGAGCCAGG--GATGAAACAGCTTGCCTTGGAAAAATCTTGAGGGAAGATGA 973
||||||| |||| | || ||||||| |||| | |||| ||||||||| ||| |||||||
Sbjct 845 AGATTATTCGAG-C-GGAAGATGAAATAGCTCGACTTGAAAAAATCTTAAGGAAAGATGA 902
Query 974 TGTTAAGATTGAGAAACTCAACTCAAAGATTCTTATCGAAAAATCGAAGTTGGAAGTGGT 1033
|||||||||| |||| || ||||| ||||| |||||||||| |||||||||||||| ||
Sbjct 903 TGTTAAGATTCAGAAGCTTAACTCGAAGATGCTTATCGAAAGATCGAAGTTGGAAGCAGT 962
Query 1034 ATCTATCGCCGAAGAAAGGATTAGCTCTCTTGCTGAGAATTTCGTTGGTTCGCTTGAGAA 1093
||||| ||||||||||| |||||||| |||||||| ||||| ||||||||||||||||
Sbjct 963 TTCTATTGCCGAAGAAAGAATTAGCTCGCTTGCTGACAATTTATTTGGTTCGCTTGAGAA 1022
Query 1094 GATAAAGAAAAGTA-GAAATGCTGCAAAGAAAGAGGAGTTCCTTT-TCAAAGAAGAGAAG 1151
| |||||||||||| |||| |||||||||||||||||||| ||| ||||||| ||||||
Sbjct 1023 GTTAAAGAAAAGTAGGAAA-GCTGCAAAGAAAGAGGAGTT-TTTTCTCAAAGATGAGAAG 1080
Query 1152 ACGGTTACAAAGGCGGAAACACAGAAAACCAAACTTGATATAGATAAAAAGGAAAGCGAA 1211
||||||||||||||||||||||||||||||||| | || ||||||||||| ||||| |||
Sbjct 1081 ACGGTTACAAAGGCGGAAACACAGAAAACCAAAATCGAAATAGATAAAAAAGAAAGAGAA 1140
Query 1212 CTGAATTCAAAGTTGGATGAGCTTGAAAAAGTGAAGCACACTGAGGCTTTAGTGCTTGAG 1271
|||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1141 CTGATTTCAAAGTTGGATGAGCTTGAAAAAGTGAAGCACACTGAGGGTTTAGTGCTTGAG 1200
Query 1272 AAGCTTGA-ATCTTTAGTAGAAGACATGATGGAGAGTCGCGAAATGGAGTCTGAGCATTG 1330
|||||||| | || |||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1201 AAGCTTGAGA-CTCTAGTAGAAGACACGATGGAGAGTCGCGAAATGGAGTCTGAGCATTG 1259
Query 1331 TTCAACAATCACTATCTCGAGGTTTGAGTACGAGTATTTGAGTAAACATGCTTCACAAGC 1390
|||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1260 TTCAACAATCACAATCTCGAGGTTTGAGTACGAGTATTTGAGTAAACATGCTTCTCAAGC 1319
Query 1391 GGAAGAAACCGCAGAGAAGAAAGTTGCAGCAGCAGCGGCGTGGGTGGAAGCACTCAAGGC 1450
||||||||||||| |||||||||||||||||||| ||| |||||||||||||||||||
Sbjct 1320 AGAAGAAACCGCAGTGAAGAAAGTTGCAGCAGCAGAGGCATGGGTGGAAGCACTCAAGGT 1379
Query 1451 TAGCACAAAATCGTTTCTGATGAAGACGGAAACTTTGATGAGAGAAAGTGAAATGACGAA 1510
|||||| |||||| |||| ||||| |||| ||||||||||||||||||||||||| ||
Sbjct 1380 TAGCACCAAATCGGTTCTTCTGAAGTCGGATACTTTGATGAGAGAAAGTGAAATGATGAG 1439
Query 1511 AGCGGAAGAAGAGAGAGAAGTGTTTAGGATGGAAAGGTCATTGTCGACGAAGAGATTGGT 1570
|| ||||||||||| |||| ||||||||||||||||||| |||||||||||||||||| |
Sbjct 1440 AGTGGAAGAAGAGAAAGAATTGTTTAGGATGGAAAGGTCGTTGTCGACGAAGAGATTGAT 1499
Query 1571 GGAGGGTGAGATTCAGAAGATTAAG-AGGAACTCGGAAGCTGAAGGCTATATTTCTCCCA 1629
||||||||||||||||||| ||||| || ||||||||| | ||||||||||||||||||
Sbjct 1500 GGAGGGTGAGATTCAGAAGTTTAAGGAG-AACTCGGAAACCAAAGGCTATATTTCTCCCA 1558
Query 1630 AACCAGTTGGAAAATTCACACCGGTCCAACGTGGGAAGCCAAGAAGATACTCATCTGTTG 1689
|||||| |||||||||||||||||| ||||||||||||||||||||||| ||||||| |
Sbjct 1559 AACCAGATGGAAAATTCACACCGGTACAACGTGGGAAGCCAAGAAGATATTCATCTGCAG 1618
Query 1690 GAACTCCAACTTTCTTTGTAATCAAGAAGAAAAAGAAAGTTCCACGCTTGGCCAAGTTCT 1749
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
Sbjct 1619 GAACTCCAACTTTCTTTGTAATCAAGAAGAAAAAGAAAATTCCACGCTTGGCCAAGTTTT 1678
Query 1750 TCAGTCGCAGAAGTTAA 1766
| ||||| | |||||||
Sbjct 1679 TTAGTCGAAAAAGTTAA 1695
> Ahg908217 jgi|Araly1|908217|Al_scaffold_0002_1298
Length=1854
Score = 422 bits (228), Expect = 5e-117
Identities = 1003/1355 (74%), Gaps = 142/1355 (10%)
Strand=Plus/Plus
Query 328 TTATGAGAGTTTTGGAGG-TTGTGAAAG-AAGAAGTGAGTAGAG-TGAAGCTTGATGTA- 383
||||||||| ||||||| || || ||| ||||| |||||| || ||||||||||| ||
Sbjct 356 TTATGAGAGAGTTGGAGGATT-TG-AAGCAAGAATTGAGTA-AGCTGAAGCTTGATATAG 412
Query 384 TCATCTGTTTTGATAGAGAGAGTTGCAGCAGAGGAAA-AAGTCGAA--GAACTGCGGTTT 440
| | ||||| || ||||| ||||| || || |||| |||| || || || ||| |
Sbjct 413 T-GTATGTTTCGAGAGAGAAAGTTGTGGCGGA-GAAAGAAGT--AATGGAGTTGGGGTCT 468
Query 441 AAAACGGAAGG-GGGTTTG-AGATTGTTGGAGAGTCTGAAG-AAGGAAATCGAGGTTGCG 497
| || || ||| | |||| || ||||| |||||||| ||| | || | || ||||||
Sbjct 469 AGAATGG-AGGAGAATTTGAAG-TTGTTAGAGAGTCTTAAGTTA-GAGGTTGATGTTGCG 525
Query 498 AATGAGGAACAT-TTGATGGTTGCATTGG-GAAAGATTGAGGCGTTGAAAGGA-TATAAA 554
|| || |||||| || |||||| ||||| | ||||| ||||| ||| ||||| | ||||
Sbjct 526 AACGAAGAACATGTT-TTGGTTGAATTGGCG-AAGATCGAGGCTTTG-AAGGAGTGTAAA 582
Query 555 GAGATAGAAAGA-CAGAGAGA-AGGGAAAGCTATAAAGGT-TTTGGATTTGTTGGTGGAA 611
||| | | |||| |||||||| |||||||| | || || ||| || | || | ||
Sbjct 583 GAGGTTG-AAGAGCAGAGAGAGAGGGAAAGGAAGGAA-GTGTTT-GAGTCATT-GCATAA 638
Query 612 A-GGAATAAGAGAATCAA-GAACATGTTGGA-AGAGGCGGAAAGATCGAAGGA-TATTGA 667
| | || || ||||| || ||| ||| || |||| || ||||| ||| | | ||||
Sbjct 639 ACGAAAGAAAAGAATAAAGGAA-ATG-AAGAGAGAGATTGAGAGATCAAAGAACT-TTGA 695
Query 668 -AATTGAGTTGTTTGAGACGAGTA-CGGATGTTGAGATGTTGGAAACACAGTTAAAGCTT 725
|| |||||| | |||||| | || |||| |||||||||||||||| ||||||||||||
Sbjct 696 GAA-TGAGTTATCTGAGAC-ATTATTGGATATTGAGATGTTGGAAACTCAGTTAAAGCTT 753
Query 726 TTCAAGAAAATGGAGAGG-AGAGTTCAGGGGAGAGATAGTAGTAGTATGTCGAGATC--- 781
||||| ||||||||||| || ||||| |||| || | | |||||||||||||||
Sbjct 754 GTCAAGGAAATGGAGAGGAAG-GTTCA---GAGAAAT-G-A-TAGTATGTCGAGATCGAA 806
Query 782 AAACCGTTCTTTTGGAAGAGG-GAAGTATAGTTTATCGGTTTTGAAAGAAG---T----G 833
|||||| |||||| |||||| ||| ||| | | ||||| |||||||||| | |
Sbjct 807 AAACCGAGCTTTTGAAAGAGGAAAAG-ATAATCTGTCGGTATTGAAAGAAGTTATGGAAG 865
Query 834 --ACTGAAGGGAAGAAGGAGGAACTTGCTTCTGTTAAAGTAGAGA-TCTTCAGGGTCAT- 889
|| |||| |||||||| ||||||||||||| |||| | ||| | |||| ||| |
Sbjct 866 CAACAGAAGCGAAGAAGGCGGAACTTGCTTCTATTAACGCAGA-ACTCTT--TTGTC-TA 921
Query 890 GACAGT--AATGGATGCGTTGAGGAATGAGA-TT-ATCCGAGCCAGGGATGAAACAGCTT 945
| || | ||||||| | |||||||| || | || | || ||| | | ||||||||||
Sbjct 922 GTCAATACAATGGATACCTTGAGGAAAGA-ACTTGA-CCAAGCTAAACAAGAAACAGCTT 979
Query 946 GCCTTGGA-AAAATCTTGAGGGAA-GATGATGTTAA-GATTGAGAAACTCAACT-CAAAG 1001
| || || || || | | || ||||||| ||| |||||||| |||||| | | |||
Sbjct 980 G-GTTAGATAAGATGAT-ACAAAAGGATGATG-TAATGATTGAGAGACTCAA-TACGAAG 1035
Query 1002 ATTCTTA-T-CGAAAAATCGAAGTTGGAAGTGGTATCTATC-GCCGAAGAAAGGATTAGC 1058
| |||| | |||| ||| || || | || |||||| | || |||||||| || |||
Sbjct 1036 CTGCTTATTGTGAAAGATC-AA-TTAGCAGCAGTATCT-GCAGCTGAAGAAAGAATCAGC 1092
Query 1059 TCTCTTGCTGAGAATTTCGTTGGTTCGCTTGAGAAGA-TAAAGAAAAG-TAGA-AATGCT 1115
| |||||| || ||||| | |||| ||||||| | ||||| || | |||| || |||
Sbjct 1093 TGTCTTGCGGACAATTTAACTACTTCGTTTGAGAA-ACTAAAG-AACGATAGAGAA-GCT 1149
Query 1116 GCAAAGAAAGAGGAG-TT--CCTTTTCAAAGAAGAGAAG-ACGG-TTA-CAAAGGCGGAA 1169
|| |||||||||||| || || || |||| | ||||| | || | | | | |||
Sbjct 1150 GCGAAGAAAGAGGAGCTTAACC--TT-AAAG-A-AGAAGCAAGGATCATC-GATAAAGAA 1203
Query 1170 ACACAGAA-AACCAAACTTGATATAGATAAAAAGGAAAGCGAACTGA-ATTCAAAGTTGG 1227
| |||||| | | ||| | | | | ||| |||||||| | | | | ||| ||||| |
Sbjct 1204 ATACAGAATATCGAAA-TAGGTTTTGATGGAAAGGAAAAAG-AGTTACTTTCCAAGTTAG 1261
Query 1228 ATGAGCTTGAA-AAAGTGAAGCACACTGAGGCTTTAG-TGCTTGAGAAGCTTGAATC--T 1283
|||||||| || |||| ||||||||| |||||||||| | || ||||||||||||| |
Sbjct 1262 ATGAGCTT-AAGAAAGCGAAGCACACAGAGGCTTTAGCT-CTCAAGAAGCTTGAATCAAT 1319
Query 1284 -TTAGTAGAAGACATGATGGAGAGTCGCGAAATGGAGTCT-GAGCATTGTTCAACAATCA 1341
||| |||| ||| ||||| | ||| |||||||| ||| | |||| |||||| ||||
Sbjct 1320 GGTAG-AGAAAACA--ATGGAAACTCGGGAAATGGAATCTCG-GCATAATTCAACCATCA 1375
Query 1342 CTATCTCGAGGTTTGAGTACGAGTATTTGAGT--AAACATGCTTCACAAGCGGAAGAAAC 1399
| || || || || |||||||||||||||||| ||| | |||| || || ||||||||
Sbjct 1376 CAATATCAAGATTCGAGTACGAGTATTTGAGTGGAAA-A-GCTTGTCACGCTGAAGAAAC 1433
Query 1400 CGCAGAGAAGAAAGTTGCAGCAGCAGCGGCGTGGGTGGAAGCACTCAAGGCTAGCACAAA 1459
||||||||||||||| | ||| ||| ||||||||| |||||||| ||||||||||| ||
Sbjct 1434 CGCAGAGAAGAAAGTGGAAGCTGCAATGGCGTGGGTCGAAGCACTAAAGGCTAGCACTAA 1493
Query 1460 ATCGTTTCTGATGAAGACGGAAACTTTGATGAGAGAAAGT--GAAATGACGAAAG-CGGA 1516
|| || |||| ||||| ||| |||| | ||| | ||| |||| || || | |||
Sbjct 1494 GGCGATTATGATAAAGACAGAATCTTTAAAGAGGGTGAGTGGGAAA--AC-AATGTTGGA 1550
Query 1517 AGAAGAGAGAGAAGT-GTTTAGGATGGAAAGGTCATTGTCGACGAAGAGATTGGTGGAGG 1575
||||||||| ||| | |||||||||| | ||||| | |||| ||||||||| | | |
Sbjct 1551 AGAAGAGAGGGAA-TCGTTTAGGATGCAGAGGTCGCTATCGATAAAGAGATTGATCCAAG 1609
Query 1576 GTGAGATTCAGAAGATT-AA-GAGGAACTCGGAAG 1608
||||||| ||||| || || || ||||| ||||
Sbjct 1610 ATGAGATTGAGAAG-TTCAAGGA-AAACTCAGAAG 1642
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66277026300
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5