BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G38170.1

Length=444
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg948062 jgi|Araly1|948062|scaffold_704291.1                        337    5e-92


> Ahg948062 jgi|Araly1|948062|scaffold_704291.1
Length=355

 Score =  337 bits (182),  Expect = 5e-92
 Identities = 305/362 (84%), Gaps = 18/362 (5%)
 Strand=Plus/Plus

Query  61   GTTCCTAGAG-TTTGAAGACATGAAGTTCACGGCGCTTGTGTTCATTGTGTTCGTGGTGG  119
            ||| |||| | |||||||| |||||||||||| |  |||||||||||||||||||||| |
Sbjct  1    GTTGCTAGGGTTTTGAAGATATGAAGTTCACGACATTTGTGTTCATTGTGTTCGTGGTAG  60

Query  120  GTGTCATGGTT-TCTCCAGTTTCAATCAGAGCAACTGAGGT-CAAACTTTCTGGAGGAGA  177
            ||| ||| ||| ||||||||| || |||||||||  | |||  ||| ||| |  || |||
Sbjct  61   GTGCCAT-GTTATCTCCAGTTCCAGTCAGAGCAAGAGTGGTGGAAAGTTT-TAAAGAAGA  118

Query  178  AGCT-GATGTAACGTGTGATGC-AGTACAGCTTAGTTCATGCGCAAC-ACCAATGC-TCA  233
            || |  |||||||||||||||| | |  ||||||||||||||   ||  || || |  ||
Sbjct  119  AG-TAAATGTAACGTGTGATGCTAAT-GAGCTTAGTTCATGC-TTACTGCC-ATTCACCA  174

Query  234  CAGGAGTACCACCGTCTACAGA-GTGTTGCGGGAAACTGAAGGAGCAACAGCCGTGTTTT  292
            |||||||| ||||||| ||| |  ||||||   ||||| |||||||||||||||||||||
Sbjct  175  CAGGAGTATCACCGTCAACA-ACTTGTTGCACAAAACTAAAGGAGCAACAGCCGTGTTTT  233

Query  293  TGTACATATATTAAAGATCCAAGATATAGTCAATATGTTGGTTCTGCAAATGCTAAGAAA  352
            |||||||||||||||||||||| ||||||||||||||||||| || |||| |||||||||
Sbjct  234  TGTACATATATTAAAGATCCAAAATATAGTCAATATGTTGGTACTCCAAACGCTAAGAAA  293

Query  353  ACGTTAGCAACTTGTGGTGTTCCTTATCCTACT--T-GTTGATTTTTGAGATATTGCTaa  409
            |||||||||||||||||||||||||||||||||  | |||||  ||||||||||||||||
Sbjct  294  ACGTTAGCAACTTGTGGTGTTCCTTATCCTACTACTTGTTGAAGTTTGAGATATTGCTAA  353

Query  410  aa  411
            ||
Sbjct  354  AA  355



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 16025347380


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5