BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G38195.1
Length=420
Score E
Sequences producing significant alignments: (Bits) Value
Ahg948061 jgi|Araly1|948061|scaffold_704290.1 442 1e-123
> Ahg948061 jgi|Araly1|948061|scaffold_704290.1
Length=329
Score = 442 bits (239), Expect = 1e-123
Identities = 293/319 (92%), Gaps = 4/319 (1%)
Strand=Plus/Plus
Query 62 AATCATCAAAGTTTCAAGACATGAAGTTCATGAAACTAATGGTCATCACAGTTGTGATAG 121
||||||||||||||||||||||||||||||||| ||||||| |||||||| |||||||||
Sbjct 2 AATCATCAAAGTTTCAAGACATGAAGTTCATGACACTAATGATCATCACATTTGTGATAG 61
Query 122 TCGTCATGTCATCTCCTATTTTGATCAAATCAGAAGTGTCATC-GTCATGTATTCCAACA 180
|| ||||||||||| |||||||||||||| |||||| | || | ||||||| ||||||||
Sbjct 62 TCATCATGTCATCTTCTATTTTGATCAAAGCAGAAGAGGCA-CAGTCATGTGTTCCAACA 120
Query 181 GAACTCATGCCATGCTTACCGGCAATGACCACAGGAGGACAACCAACTAAAGATTGTTGC 240
|| |||||||||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 121 GATCTCATGCCATGCTTACCGGCAATGACTACAGGAGGACAACCGGCTAAAGATTGTTGC 180
Query 241 GACAAACTGATTGAGCAAAAGGAATGTTTATGTGGTTACATTAACAATCCC-TTATACAG 299
|||||||||||||||||||| ||||||||||||||||||||| || ||| ||||| ||
Sbjct 181 GACAAACTGATTGAGCAAAAATCATGTTTATGTGGTTACATTAAAAA-CCCATTATATAG 239
Query 300 TACGTTTGTTAGCTCTCCAGTTGCTCGCAAAGTTTTAGAAGTTTGTAATATTCCTTATCC 359
|| |||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||
Sbjct 240 TATGTTTGTTAGCTCTCCACTTGCTCGCAAAGTTTTAGAAGCTTGTAATATTCCTTATCC 299
Query 360 TAGTTGTTAAAGCTCAATA 378
||||||||||| |||||||
Sbjct 300 TAGTTGTTAAATCTCAATA 318
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 15109613244
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5