BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G38200.1 Length=1699 Score E Sequences producing significant alignments: (Bits) Value Ahg494160 jgi|Araly1|494160|fgenesh2_kg.7__3593__AT5G38200.1 2230 0.0 Ahg475782 jgi|Araly1|475782|fgenesh2_kg.2__912__AT1G66860.1 902 0.0 Ahg471694 jgi|Araly1|471694|fgenesh2_kg.1__1648__AT1G15040.1 159 5e-38 > Ahg494160 jgi|Araly1|494160|fgenesh2_kg.7__3593__AT5G38200.1 Length=1399 Score = 2230 bits (1207), Expect = 0.0 Identities = 1337/1401 (95%), Gaps = 4/1401 (0%) Strand=Plus/Plus Query 64 Attttttttgttatttg-ctttttcattttCTAGGTACAAATCAAATGGGAACAATAGAT 122 ||||||||||||||||| ||||||||||||| ||| ||||||||||||||||||||| Sbjct 1 ATTTTTTTTGTTATTTGATTTTTTCATTTTCTGGGT-TAAATCAAATGGGAACAATAGAG 59 Query 123 ATGGATCCAAAGTTGAATGATCTCTCTCAAATCCTCCCTCGTGTCCTCGTCGTATCTAGA 182 ||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 60 ATGGATCCAAAACTGAATGATCTCTCTCAAATCCTCCCTCGTGTCCTCGTCGTCTCTAGA 119 Query 183 CGCACCGTTCGTAAAAACAAATTCGTCGATTTCGTTGGTGAATACCATCTTGATTTGATA 242 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 120 CGCACCGTTCGTAAAAACAAATTCGTCGATTTCGTTGGTGAATATCATCTTGATTTGATA 179 Query 243 GTACGTTACGGATGTGTACCAGTGATTGTACCAAGAGTAACGGGTGTTCACATGTTGCTT 302 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||| Sbjct 180 GTACGTTACGGATGTGTACCAGTGATTGTACCAAGAGTAACTGGTGTTCACATGTTACTT 239 Query 303 GAGAGTTTTAAACCAATACATGGAGTTTTACTTTGTGAAGGAGAAGATATTGATCCTTCT 362 ||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 240 GAGAGCTTTAAACCAATTCATGGAGTTTTACTTTGTGAAGGAGAAGATATTGATCCTTCT 299 Query 363 CTTTATGAATCTGAAATATCTTCTCTTTCTCCTGAAGAGCTTCAAGAGATTAGAGAAACA 422 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 300 CTTTATGAATCTGAAATATCTTCTCTTTCTCCTGAAGAGCTTCAAGAGATTAGAGAAACA 359 Query 423 CATGCTAGTGATACAGCTATTGATAAAGAGAAAGATTCTATTGAGTTAGGTCTTGCTAAG 482 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 360 CATGCTAGTGATACAGCTATTGATAAAGAGAAAGATTCCATTGAGTTAGGTCTTGCTAAG 419 Query 483 CTTTGTCTTGAACAGAACATTCCTTACTTAGGAATCTGTAGAGGATCACAAATTTTGAAT 542 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 420 CTTTGTCTTGAACAGAACATTCCTTACTTAGGAATCTGCAGAGGATCACAAATTTTGAAT 479 Query 543 GTTGCTTGTGGTGGGACTCTTTATCTAGATTTAGAGAAAGAGCTAACGAATAAGTTACCA 602 ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 480 GTTGCTTGTGGTGGGACTCTTTATCTAGATTTAGAGAAAGAACTAACGAATAAGTTACCG 539 Query 603 GAAGAACGAAGAACGATGCATATCGATTATGATAATTATGATGGTCATAGACATGTTGTG 662 |||||||||||||||| ||||||||||||||||| |||||||| ||||||||||||||| Sbjct 540 GAAGAACGAAGAACGAAACATATCGATTATGATAACTATGATGGACATAGACATGTTGTG 599 Query 663 AGGATTGTTGAGAACAGTCCACTTCATTCCTGGTTTAAAGATTCATTAGATGGTGA-AAA 721 ||||||||||||||||||||||||||||| ||||||||||||||| | |||||||| ||| Sbjct 600 AGGATTGTTGAGAACAGTCCACTTCATTCTTGGTTTAAAGATTCACTGGATGGTGATAAA 659 Query 722 TATGGAGATTTTGGTTAATAGTTATCACCATCAAGGTGTGAAGAGACTGGCACAAAGATT 781 ||||||||||| |||||||||||||| ||||||||||| |||||| ||||||| ||||| Sbjct 660 -ATGGAGATTTTAGTTAATAGTTATCATCATCAAGGTGTTAAGAGATTGGCACAGAGATT 718 Query 782 TGTGCCAATGGCTTTTGCTGCTGATGGGTTAATGGAAGGTTTTTACGATCCGGATGCGTA 841 |||||||||||| |||||| ||||||| |||||||||||||||||||||||||||||||| Sbjct 719 TGTGCCAATGGCGTTTGCTTCTGATGGATTAATGGAAGGTTTTTACGATCCGGATGCGTA 778 Query 842 TAATCCTGAAGAAGGGAAGTTCATAATGGGTTTACAGTTTCATCCAGAGAGAATGAGACA 901 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 779 TAATCCCGAAGAAGGGAAGTTCATAATGGGTTTACAGTTTCATCCAGAGAGAATGAGACA 838 Query 902 ACATGATCTTGATGAGTTTGATTATCCTGGTTGTCCTGCTGCTTATCAGGAGTTTGCAAA 961 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 839 ACATGATCTTGATGAGTTTGATTATCCTGGTTGTCCTGCTGCTTATCAGGAGTTTGCAAA 898 Query 962 GGCGGTGATTGCGTACCAGAAGAAGCTGAATAGCTCATTGTCTGTTCCAAAGACATTGAA 1021 ||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| Sbjct 899 GGCGGTGATTGCGTATCAGAAGAAGCTGAATAGCTCATTGTCGGTTCCAAAGACATTGAA 958 Query 1022 GCTTGATAGTGAAATGGAGAATAAAAGAAAGATGCTTGTTAGGAGTTTCTCACTTGCTAA 1081 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 959 GCTTGATAGTGAAATGGAGAATAAAAGAAAGATACTTGTTAGGAGTTTCTCACTTGCTAA 1018 Query 1082 GTATATGTATGTTAGAGGAGCACCAGGGAAGAACCCATCAAAAGAATCAGAACTTGAAGT 1141 ||||||||| |||||||| | || ||||||||| ||||||||||||||||||| ||||| Sbjct 1019 GTATATGTACGTTAGAGGTTCTCCTGGGAAGAACTCATCAAAAGAATCAGAACTCGAAGT 1078 Query 1142 TGGAGCCGAGTTCCTTGAGTCGAACACGGCGCTAAGCGCAGAGCAAGAGATGAGGCTGAA 1201 |||||||||||| |||||||| ||||||||||| ||||| |||||||||||||||||||| Sbjct 1079 TGGAGCCGAGTTTCTTGAGTCCAACACGGCGCTGAGCGCGGAGCAAGAGATGAGGCTGAA 1138 Query 1202 GGAGATGGGAGCGACGGTGAGGAACGGAGGATCATATATGAAAAAGTTGAAAGTGGACGA 1261 ||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| Sbjct 1139 GGAGATGGGAGCGACGGTGAGAAACGGAGGATCATATATGAAAAAGTTGAAAGTAGACGA 1198 Query 1262 GGATAAGCAGAGGATGGCGAGGAACATGATGAAAAAGATGAACATAGAGCAACTCTCAGA 1321 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 1199 GGATAAGCAGAGGATGGCGAGGAACATGATGAACAAGATGAACATAGAGCAACTCTCAGA 1258 Query 1322 GCTTATGGCGTTTTATCATTTGATGGGTAATATATGTGGAGAGGTTTTGGACCGAAAGCT 1381 ||||||||| ||||||||||||||||||||||| |||||||| |||||||| ||||||| Sbjct 1259 GCTTATGGCATTTTATCATTTGATGGGTAATATCTGTGGAGAAGTTTTGGAGAGAAAGCT 1318 Query 1382 TCAAGGCAATGTCAATGAATGCTTGAGGGACCTATGAGTTTCATGTGAATGAATCGCATG 1441 |||||| ||||||||||||||||||||||| || |||||||||| |||||||| |||||| Sbjct 1319 TCAAGGAAATGTCAATGAATGCTTGAGGGATCTGTGAGTTTCATATGAATGAAACGCATG 1378 Query 1442 CAGAGGATGCTTTAAGGAAAA 1462 |||||||||||||||| |||| Sbjct 1379 CAGAGGATGCTTTAAGAAAAA 1399 > Ahg475782 jgi|Araly1|475782|fgenesh2_kg.2__912__AT1G66860.1 Length=1448 Score = 902 bits (488), Expect = 0.0 Identities = 1018/1268 (80%), Gaps = 59/1268 (5%) Strand=Plus/Plus Query 136 TGAATGATCTCTCTCAAATCCTCCCTCGTGTCCTCGTCGTATCTAGACGCAC-CGTTCGT 194 |||||||||||||||||||||||||||||||||| ||||| ||||||||||| | |||| Sbjct 62 TGAATGATCTCTCTCAAATCCTCCCTCGTGTCCTTGTCGTCTCTAGACGCACTC-TTCGC 120 Query 195 AAAAACAAATTCGTCGATTTCGTTGGTGAATACCATCTTGAT-TTGATAGTACGTTAC-G 252 || |||||||||||||||||||||||||| |||||||||||| || ||||| || | | Sbjct 121 AAGAACAAATTCGTCGATTTCGTTGGTGAGTACCATCTTGATCTT-ATAGT-CGAGAATG 178 Query 253 GATG-TGTACCAGTGATTGTACCAAGAGTAACGGGTGTTCACATGTTGCTTGAGAGTTTT 311 | || |||||| || ||||||||| |||| | |||||||||| |||||| ||||| || Sbjct 179 G-TGCTGTACCGGTAATTGTACCACGAGTGGCTGGTGTTCACAAGTTGCTAGAGAGCTTC 237 Query 312 AAACCAATACATGGAGTTTTACTTTGTGAAGGAGAAGATATTGATCCTTCTCTTTATGAA 371 || || || ||||||||| | ||||||||||||||||| || || |||||||| || || Sbjct 238 AAGCCCATCCATGGAGTTCTCCTTTGTGAAGGAGAAGACATCGACCCTTCTCTATACGAG 297 Query 372 TCTGAAATATCTTCTCTTTCTCCTGAAGAGCTTCAAGA-GATTAGAGAAA-CACATGCTA 429 |||||||||||||| ||||| | | |||| || | | | |||| | |||| ||||||| | Sbjct 298 TCTGAAATATCTTCCCTTTCACTTCAAGAACT-CGACAAGATTCG-GAAAACACATGCAA 355 Query 430 GTGATACAGCTATTGATAAAGAGAAAGATTCTATTGAGTTAGGTCTTGCTAAGCTTTGTC 489 ||||||||||||| || || || ||||| ||||||||||| | || || ||||| || | Sbjct 356 GTGATACAGCTATCGACAAGGAAAAAGACTCTATTGAGTTTGCCCTCGCAAAGCTCTGCC 415 Query 490 TTGAACAGAACATTCCTTACTTAGGAATCTGTAGAGGATCACAAATTTTGAATGTTGCTT 549 | |||||||||||||||||||| || || |||||||| ||||| ||||||||||||||| Sbjct 416 TAGAACAGAACATTCCTTACTTGGGGATTTGTAGAGGTTCACAGGTTTTGAATGTTGCTT 475 Query 550 GTGGTGGGACTCTTTATCTAGATTTAGAGAAAGAGCTAACGAAT-AA-GTTACCAGAAGA 607 ||||||| | |||||||| ||| || ||||||||| | |||| | || ||| || || || Sbjct 476 GTGGTGGAAGTCTTTATCAAGACTTGGAGAAAGAGGTCACGA-TCAATGTT-CCTGAGGA 533 Query 608 ACGA-AGAACGA--TGCATATCGATTATGATAATTATGATGGTCATAGACATGTTGTGAG 664 || | |||| || | ||||| ||||||||| | ||||||||| ||||||||| |||| Sbjct 534 AC-ATAGAA-GAAAT-CATATAGATTATGATGACTATGATGGTTATAGACATGAGGTGAA 590 Query 665 GATTGTTGAGAACAGTCCACTT--CATTCCTGGTTTAAAGATTCATTAGATGGTGAAAAT 722 ||| || | ||||| || ||| ||| ||||| |||||||| ||||||| || || Sbjct 591 GATAGTAAAAAACAG-CC-CTTTGCATAAATGGTTCAAAGATTCTTTAGATGAAGACAAG 648 Query 723 ATGGAGATTTTGGTTAATAGTTATCACCATCAAGGTGTGAAGAGACTGGCACAAAGATTT 782 |||||||| ||||| |||||||||||||| ||||| || || ||| |||| |||||||| Sbjct 649 ATGGAGATCTTGGTCAATAGTTATCACCACCAAGGGGTTAAAAGATTGGCGCAAAGATTC 708 Query 783 GTGCCAATGGCTTTTGCTGCTGATGGGTTAATGGAAGGTTTTTACGATCCGGATGCGTAT 842 |||||||||||||||||| ||||||| || || ||||| ||||| ||||| ||| ||| Sbjct 709 GTGCCAATGGCTTTTGCTCCTGATGGATTGATCGAAGGGTTTTATGATCCCGATATGTAC 768 Query 843 AATCCTGAAGAAGGGAA-GTTCATAATGGGTTTACAGTTTCATCCAGAGAGAATGAGACA 901 ||||||||||| ||||| |||| ||||||||||||||||||||||||||||||||||| | Sbjct 769 AATCCTGAAGA-GGGAAAGTTCCTAATGGGTTTACAGTTTCATCCAGAGAGAATGAGA-A 826 Query 902 ACA-TGATCTTGATGAGTTTGATTATCC-TGGTTGTCCTGCTGCTTATCAGGAGTTTGCA 959 | | || | ||||| ||||||| ||| ||||||||||| |||||||||||| |||||| Sbjct 827 AGAATGGTAGCGATGAATTTGATT-TCCCTGGTTGTCCTGTTGCTTATCAGGAATTTGCA 885 Query 960 AAGGCGGTGATTGCGTACCAGAAGAAGCTGAATAGCTCATTGTCTGTTCCAAAGACATT- 1018 || || |||||||| | || || | | || ||| | || | || |||| ||| Sbjct 886 AAAGCAGTGATTGCTTGTCA-AA-A-G---AA--GCT--T-GT-T---CCTAAGAAATTA 930 Query 1019 GAAGCTTGATAGTGAAATGGAGAATAAAAGAAAGATGCTTGTTAGGAGTTTCTCACTTGC 1078 ||| || || ||||||||||| ||||||||||| ||||| ||||| ||||| ||||| Sbjct 931 GAA-CTCAATCCAGAAATGGAGAAAAAAAGAAAGATACTTGTCAGGAGCTTCTCGCTTGC 989 Query 1079 TAAGTATATGTATGTTAGAGGAGCAC-CAGG-GAAGAACCCATCAAAAGAATCAGAACTT 1136 | || |||||| ||| | | | ||| |||| ||| | ||||||||||||| Sbjct 990 GAGGTCTATGTACACAAGATCTT-ATTC-GTTGAATAACCAATCCAGAGAATCAGAACTT 1047 Query 1137 GAAGTTGGAGCCGAGTTCCTTGAGTCGAACACGGCGCTAAGCGCAGAGCAAGAGATGAGG 1196 || |||||||| ||||| |||||||| || || || ||||| | | |||||||||||||| Sbjct 1048 GACGTTGGAGCTGAGTTTCTTGAGTCAAATACCGCTCTAAGTGTACAGCAAGAGATGAGG 1107 Query 1197 CTGAAGGAGATGGGAGCGACGGTGAGGAACGGAGGATCATATATGAAAAAG-TT-GAAAG 1254 || |||||||||||||||||| |||||||||| ||||||| || | ||||| || ||| Sbjct 1108 CTAAAGGAGATGGGAGCGACGATGAGGAACGGTGGATCATTTACGGAAAAGCTTAGAAT- 1166 Query 1255 TGGACGAGGATAAGCAGAGGATGGCGAGGAACATGATGAAAAAGATGAACATAGAGCAAC 1314 | | || || |||||||||| ||| | |||||| ||||| || |||||| | |||| || Sbjct 1167 TC-ATGAAGAGAAGCAGAGGAAGGCTATGAACATAATGAAGAACATGAACGTTGAGCGAC 1225 Query 1315 TCTCAGAGCTTATGGCGTTT-TATCATTTGATGGGTAATATATGTGGAGAGGTTTTGGAC 1373 |||| ||||| ||||| ||| || || |||||||| || || | | | ||||| ||||| Sbjct 1226 TCTCTGAGCTCATGGC-TTTCTACCACTTGATGGGGAAGATCTCTAGTGAGGTGTTGGAG 1284 Query 1374 CGAAAGCT 1381 ||||||| Sbjct 1285 AGAAAGCT 1292 > Ahg471694 jgi|Araly1|471694|fgenesh2_kg.1__1648__AT1G15040.1 Length=1398 Score = 159 bits (86), Expect = 5e-38 Identities = 212/271 (78%), Gaps = 16/271 (6%) Strand=Plus/Plus Query 723 ATGGAGATTTTGGTTAA-TAGTTATCACCATCAAGGTGTGAAGAGACTGGCACAAAGATT 781 |||||||| |||| || | | ||||||||||||||||||||||||||||| ||| | || Sbjct 648 ATGGAGATAATGGTGAACTCG-TATCACCATCAAGGTGTGAAGAGACTGGCGCAACGTTT 706 Query 782 TGTGCCAATGGCTTTTGCTGCTGATGGGTTAATGGAAGGTTTTTACGATCCGGAT-GCGT 840 || ||| ||||||| ||| ||||||| || || ||||| ||||| |||||| || || | Sbjct 707 TGCGCCCATGGCTTACGCTCCTGATGGTTTGATTGAAGGATTTTATGATCCGAATCGC-T 765 Query 841 ATAATCCTGAAG-AAGGG-AAGTTCATAATGGGTTTACAGTTTCATCCAGAGAGAATGAG 898 || |||| ||| |||| || ||| | |||||| | ||||||||||| ||||| ||||| Sbjct 766 ATGATCCA-AAGGAAGGTCAA-TTCTTGATGGGTCTGCAGTTTCATCCCGAGAGGATGAG 823 Query 899 ACAA-CATGATCTTGATGAGTTTGATTATCCTGGTTGTC-CTGCT-GCTTATCAGGAGTT 955 | | | ||| ||||||||||||||||| || || | || | | |||||||||||| Sbjct 824 GCTTTCGGGCTCT-GATGAGTTTGATTATCCAGGCTG-CGCTT-TAGTTTATCAGGAGTT 880 Query 956 TGC-AAAGGCGGTGATTGCGTACCAGAAGAA 985 || |||| | ||||| || | |||||||| Sbjct 881 TGTGAAAG-CTGTGATCGCATTTCAGAAGAA 910 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 63724979885 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5