BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G38200.1
Length=1699
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494160 jgi|Araly1|494160|fgenesh2_kg.7__3593__AT5G38200.1 2230 0.0
Ahg475782 jgi|Araly1|475782|fgenesh2_kg.2__912__AT1G66860.1 902 0.0
Ahg471694 jgi|Araly1|471694|fgenesh2_kg.1__1648__AT1G15040.1 159 5e-38
> Ahg494160 jgi|Araly1|494160|fgenesh2_kg.7__3593__AT5G38200.1
Length=1399
Score = 2230 bits (1207), Expect = 0.0
Identities = 1337/1401 (95%), Gaps = 4/1401 (0%)
Strand=Plus/Plus
Query 64 Attttttttgttatttg-ctttttcattttCTAGGTACAAATCAAATGGGAACAATAGAT 122
||||||||||||||||| ||||||||||||| ||| |||||||||||||||||||||
Sbjct 1 ATTTTTTTTGTTATTTGATTTTTTCATTTTCTGGGT-TAAATCAAATGGGAACAATAGAG 59
Query 123 ATGGATCCAAAGTTGAATGATCTCTCTCAAATCCTCCCTCGTGTCCTCGTCGTATCTAGA 182
||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 60 ATGGATCCAAAACTGAATGATCTCTCTCAAATCCTCCCTCGTGTCCTCGTCGTCTCTAGA 119
Query 183 CGCACCGTTCGTAAAAACAAATTCGTCGATTTCGTTGGTGAATACCATCTTGATTTGATA 242
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 120 CGCACCGTTCGTAAAAACAAATTCGTCGATTTCGTTGGTGAATATCATCTTGATTTGATA 179
Query 243 GTACGTTACGGATGTGTACCAGTGATTGTACCAAGAGTAACGGGTGTTCACATGTTGCTT 302
||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 180 GTACGTTACGGATGTGTACCAGTGATTGTACCAAGAGTAACTGGTGTTCACATGTTACTT 239
Query 303 GAGAGTTTTAAACCAATACATGGAGTTTTACTTTGTGAAGGAGAAGATATTGATCCTTCT 362
||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 GAGAGCTTTAAACCAATTCATGGAGTTTTACTTTGTGAAGGAGAAGATATTGATCCTTCT 299
Query 363 CTTTATGAATCTGAAATATCTTCTCTTTCTCCTGAAGAGCTTCAAGAGATTAGAGAAACA 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 CTTTATGAATCTGAAATATCTTCTCTTTCTCCTGAAGAGCTTCAAGAGATTAGAGAAACA 359
Query 423 CATGCTAGTGATACAGCTATTGATAAAGAGAAAGATTCTATTGAGTTAGGTCTTGCTAAG 482
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 360 CATGCTAGTGATACAGCTATTGATAAAGAGAAAGATTCCATTGAGTTAGGTCTTGCTAAG 419
Query 483 CTTTGTCTTGAACAGAACATTCCTTACTTAGGAATCTGTAGAGGATCACAAATTTTGAAT 542
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 420 CTTTGTCTTGAACAGAACATTCCTTACTTAGGAATCTGCAGAGGATCACAAATTTTGAAT 479
Query 543 GTTGCTTGTGGTGGGACTCTTTATCTAGATTTAGAGAAAGAGCTAACGAATAAGTTACCA 602
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 480 GTTGCTTGTGGTGGGACTCTTTATCTAGATTTAGAGAAAGAACTAACGAATAAGTTACCG 539
Query 603 GAAGAACGAAGAACGATGCATATCGATTATGATAATTATGATGGTCATAGACATGTTGTG 662
|||||||||||||||| ||||||||||||||||| |||||||| |||||||||||||||
Sbjct 540 GAAGAACGAAGAACGAAACATATCGATTATGATAACTATGATGGACATAGACATGTTGTG 599
Query 663 AGGATTGTTGAGAACAGTCCACTTCATTCCTGGTTTAAAGATTCATTAGATGGTGA-AAA 721
||||||||||||||||||||||||||||| ||||||||||||||| | |||||||| |||
Sbjct 600 AGGATTGTTGAGAACAGTCCACTTCATTCTTGGTTTAAAGATTCACTGGATGGTGATAAA 659
Query 722 TATGGAGATTTTGGTTAATAGTTATCACCATCAAGGTGTGAAGAGACTGGCACAAAGATT 781
||||||||||| |||||||||||||| ||||||||||| |||||| ||||||| |||||
Sbjct 660 -ATGGAGATTTTAGTTAATAGTTATCATCATCAAGGTGTTAAGAGATTGGCACAGAGATT 718
Query 782 TGTGCCAATGGCTTTTGCTGCTGATGGGTTAATGGAAGGTTTTTACGATCCGGATGCGTA 841
|||||||||||| |||||| ||||||| ||||||||||||||||||||||||||||||||
Sbjct 719 TGTGCCAATGGCGTTTGCTTCTGATGGATTAATGGAAGGTTTTTACGATCCGGATGCGTA 778
Query 842 TAATCCTGAAGAAGGGAAGTTCATAATGGGTTTACAGTTTCATCCAGAGAGAATGAGACA 901
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 779 TAATCCCGAAGAAGGGAAGTTCATAATGGGTTTACAGTTTCATCCAGAGAGAATGAGACA 838
Query 902 ACATGATCTTGATGAGTTTGATTATCCTGGTTGTCCTGCTGCTTATCAGGAGTTTGCAAA 961
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 839 ACATGATCTTGATGAGTTTGATTATCCTGGTTGTCCTGCTGCTTATCAGGAGTTTGCAAA 898
Query 962 GGCGGTGATTGCGTACCAGAAGAAGCTGAATAGCTCATTGTCTGTTCCAAAGACATTGAA 1021
||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 899 GGCGGTGATTGCGTATCAGAAGAAGCTGAATAGCTCATTGTCGGTTCCAAAGACATTGAA 958
Query 1022 GCTTGATAGTGAAATGGAGAATAAAAGAAAGATGCTTGTTAGGAGTTTCTCACTTGCTAA 1081
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 959 GCTTGATAGTGAAATGGAGAATAAAAGAAAGATACTTGTTAGGAGTTTCTCACTTGCTAA 1018
Query 1082 GTATATGTATGTTAGAGGAGCACCAGGGAAGAACCCATCAAAAGAATCAGAACTTGAAGT 1141
||||||||| |||||||| | || ||||||||| ||||||||||||||||||| |||||
Sbjct 1019 GTATATGTACGTTAGAGGTTCTCCTGGGAAGAACTCATCAAAAGAATCAGAACTCGAAGT 1078
Query 1142 TGGAGCCGAGTTCCTTGAGTCGAACACGGCGCTAAGCGCAGAGCAAGAGATGAGGCTGAA 1201
|||||||||||| |||||||| ||||||||||| ||||| ||||||||||||||||||||
Sbjct 1079 TGGAGCCGAGTTTCTTGAGTCCAACACGGCGCTGAGCGCGGAGCAAGAGATGAGGCTGAA 1138
Query 1202 GGAGATGGGAGCGACGGTGAGGAACGGAGGATCATATATGAAAAAGTTGAAAGTGGACGA 1261
||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 1139 GGAGATGGGAGCGACGGTGAGAAACGGAGGATCATATATGAAAAAGTTGAAAGTAGACGA 1198
Query 1262 GGATAAGCAGAGGATGGCGAGGAACATGATGAAAAAGATGAACATAGAGCAACTCTCAGA 1321
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1199 GGATAAGCAGAGGATGGCGAGGAACATGATGAACAAGATGAACATAGAGCAACTCTCAGA 1258
Query 1322 GCTTATGGCGTTTTATCATTTGATGGGTAATATATGTGGAGAGGTTTTGGACCGAAAGCT 1381
||||||||| ||||||||||||||||||||||| |||||||| |||||||| |||||||
Sbjct 1259 GCTTATGGCATTTTATCATTTGATGGGTAATATCTGTGGAGAAGTTTTGGAGAGAAAGCT 1318
Query 1382 TCAAGGCAATGTCAATGAATGCTTGAGGGACCTATGAGTTTCATGTGAATGAATCGCATG 1441
|||||| ||||||||||||||||||||||| || |||||||||| |||||||| ||||||
Sbjct 1319 TCAAGGAAATGTCAATGAATGCTTGAGGGATCTGTGAGTTTCATATGAATGAAACGCATG 1378
Query 1442 CAGAGGATGCTTTAAGGAAAA 1462
|||||||||||||||| ||||
Sbjct 1379 CAGAGGATGCTTTAAGAAAAA 1399
> Ahg475782 jgi|Araly1|475782|fgenesh2_kg.2__912__AT1G66860.1
Length=1448
Score = 902 bits (488), Expect = 0.0
Identities = 1018/1268 (80%), Gaps = 59/1268 (5%)
Strand=Plus/Plus
Query 136 TGAATGATCTCTCTCAAATCCTCCCTCGTGTCCTCGTCGTATCTAGACGCAC-CGTTCGT 194
|||||||||||||||||||||||||||||||||| ||||| ||||||||||| | ||||
Sbjct 62 TGAATGATCTCTCTCAAATCCTCCCTCGTGTCCTTGTCGTCTCTAGACGCACTC-TTCGC 120
Query 195 AAAAACAAATTCGTCGATTTCGTTGGTGAATACCATCTTGAT-TTGATAGTACGTTAC-G 252
|| |||||||||||||||||||||||||| |||||||||||| || ||||| || | |
Sbjct 121 AAGAACAAATTCGTCGATTTCGTTGGTGAGTACCATCTTGATCTT-ATAGT-CGAGAATG 178
Query 253 GATG-TGTACCAGTGATTGTACCAAGAGTAACGGGTGTTCACATGTTGCTTGAGAGTTTT 311
| || |||||| || ||||||||| |||| | |||||||||| |||||| ||||| ||
Sbjct 179 G-TGCTGTACCGGTAATTGTACCACGAGTGGCTGGTGTTCACAAGTTGCTAGAGAGCTTC 237
Query 312 AAACCAATACATGGAGTTTTACTTTGTGAAGGAGAAGATATTGATCCTTCTCTTTATGAA 371
|| || || ||||||||| | ||||||||||||||||| || || |||||||| || ||
Sbjct 238 AAGCCCATCCATGGAGTTCTCCTTTGTGAAGGAGAAGACATCGACCCTTCTCTATACGAG 297
Query 372 TCTGAAATATCTTCTCTTTCTCCTGAAGAGCTTCAAGA-GATTAGAGAAA-CACATGCTA 429
|||||||||||||| ||||| | | |||| || | | | |||| | |||| ||||||| |
Sbjct 298 TCTGAAATATCTTCCCTTTCACTTCAAGAACT-CGACAAGATTCG-GAAAACACATGCAA 355
Query 430 GTGATACAGCTATTGATAAAGAGAAAGATTCTATTGAGTTAGGTCTTGCTAAGCTTTGTC 489
||||||||||||| || || || ||||| ||||||||||| | || || ||||| || |
Sbjct 356 GTGATACAGCTATCGACAAGGAAAAAGACTCTATTGAGTTTGCCCTCGCAAAGCTCTGCC 415
Query 490 TTGAACAGAACATTCCTTACTTAGGAATCTGTAGAGGATCACAAATTTTGAATGTTGCTT 549
| |||||||||||||||||||| || || |||||||| ||||| |||||||||||||||
Sbjct 416 TAGAACAGAACATTCCTTACTTGGGGATTTGTAGAGGTTCACAGGTTTTGAATGTTGCTT 475
Query 550 GTGGTGGGACTCTTTATCTAGATTTAGAGAAAGAGCTAACGAAT-AA-GTTACCAGAAGA 607
||||||| | |||||||| ||| || ||||||||| | |||| | || ||| || || ||
Sbjct 476 GTGGTGGAAGTCTTTATCAAGACTTGGAGAAAGAGGTCACGA-TCAATGTT-CCTGAGGA 533
Query 608 ACGA-AGAACGA--TGCATATCGATTATGATAATTATGATGGTCATAGACATGTTGTGAG 664
|| | |||| || | ||||| ||||||||| | ||||||||| ||||||||| ||||
Sbjct 534 AC-ATAGAA-GAAAT-CATATAGATTATGATGACTATGATGGTTATAGACATGAGGTGAA 590
Query 665 GATTGTTGAGAACAGTCCACTT--CATTCCTGGTTTAAAGATTCATTAGATGGTGAAAAT 722
||| || | ||||| || ||| ||| ||||| |||||||| ||||||| || ||
Sbjct 591 GATAGTAAAAAACAG-CC-CTTTGCATAAATGGTTCAAAGATTCTTTAGATGAAGACAAG 648
Query 723 ATGGAGATTTTGGTTAATAGTTATCACCATCAAGGTGTGAAGAGACTGGCACAAAGATTT 782
|||||||| ||||| |||||||||||||| ||||| || || ||| |||| ||||||||
Sbjct 649 ATGGAGATCTTGGTCAATAGTTATCACCACCAAGGGGTTAAAAGATTGGCGCAAAGATTC 708
Query 783 GTGCCAATGGCTTTTGCTGCTGATGGGTTAATGGAAGGTTTTTACGATCCGGATGCGTAT 842
|||||||||||||||||| ||||||| || || ||||| ||||| ||||| ||| |||
Sbjct 709 GTGCCAATGGCTTTTGCTCCTGATGGATTGATCGAAGGGTTTTATGATCCCGATATGTAC 768
Query 843 AATCCTGAAGAAGGGAA-GTTCATAATGGGTTTACAGTTTCATCCAGAGAGAATGAGACA 901
||||||||||| ||||| |||| ||||||||||||||||||||||||||||||||||| |
Sbjct 769 AATCCTGAAGA-GGGAAAGTTCCTAATGGGTTTACAGTTTCATCCAGAGAGAATGAGA-A 826
Query 902 ACA-TGATCTTGATGAGTTTGATTATCC-TGGTTGTCCTGCTGCTTATCAGGAGTTTGCA 959
| | || | ||||| ||||||| ||| ||||||||||| |||||||||||| ||||||
Sbjct 827 AGAATGGTAGCGATGAATTTGATT-TCCCTGGTTGTCCTGTTGCTTATCAGGAATTTGCA 885
Query 960 AAGGCGGTGATTGCGTACCAGAAGAAGCTGAATAGCTCATTGTCTGTTCCAAAGACATT- 1018
|| || |||||||| | || || | | || ||| | || | || |||| |||
Sbjct 886 AAAGCAGTGATTGCTTGTCA-AA-A-G---AA--GCT--T-GT-T---CCTAAGAAATTA 930
Query 1019 GAAGCTTGATAGTGAAATGGAGAATAAAAGAAAGATGCTTGTTAGGAGTTTCTCACTTGC 1078
||| || || ||||||||||| ||||||||||| ||||| ||||| ||||| |||||
Sbjct 931 GAA-CTCAATCCAGAAATGGAGAAAAAAAGAAAGATACTTGTCAGGAGCTTCTCGCTTGC 989
Query 1079 TAAGTATATGTATGTTAGAGGAGCAC-CAGG-GAAGAACCCATCAAAAGAATCAGAACTT 1136
| || |||||| ||| | | | ||| |||| ||| | |||||||||||||
Sbjct 990 GAGGTCTATGTACACAAGATCTT-ATTC-GTTGAATAACCAATCCAGAGAATCAGAACTT 1047
Query 1137 GAAGTTGGAGCCGAGTTCCTTGAGTCGAACACGGCGCTAAGCGCAGAGCAAGAGATGAGG 1196
|| |||||||| ||||| |||||||| || || || ||||| | | ||||||||||||||
Sbjct 1048 GACGTTGGAGCTGAGTTTCTTGAGTCAAATACCGCTCTAAGTGTACAGCAAGAGATGAGG 1107
Query 1197 CTGAAGGAGATGGGAGCGACGGTGAGGAACGGAGGATCATATATGAAAAAG-TT-GAAAG 1254
|| |||||||||||||||||| |||||||||| ||||||| || | ||||| || |||
Sbjct 1108 CTAAAGGAGATGGGAGCGACGATGAGGAACGGTGGATCATTTACGGAAAAGCTTAGAAT- 1166
Query 1255 TGGACGAGGATAAGCAGAGGATGGCGAGGAACATGATGAAAAAGATGAACATAGAGCAAC 1314
| | || || |||||||||| ||| | |||||| ||||| || |||||| | |||| ||
Sbjct 1167 TC-ATGAAGAGAAGCAGAGGAAGGCTATGAACATAATGAAGAACATGAACGTTGAGCGAC 1225
Query 1315 TCTCAGAGCTTATGGCGTTT-TATCATTTGATGGGTAATATATGTGGAGAGGTTTTGGAC 1373
|||| ||||| ||||| ||| || || |||||||| || || | | | ||||| |||||
Sbjct 1226 TCTCTGAGCTCATGGC-TTTCTACCACTTGATGGGGAAGATCTCTAGTGAGGTGTTGGAG 1284
Query 1374 CGAAAGCT 1381
|||||||
Sbjct 1285 AGAAAGCT 1292
> Ahg471694 jgi|Araly1|471694|fgenesh2_kg.1__1648__AT1G15040.1
Length=1398
Score = 159 bits (86), Expect = 5e-38
Identities = 212/271 (78%), Gaps = 16/271 (6%)
Strand=Plus/Plus
Query 723 ATGGAGATTTTGGTTAA-TAGTTATCACCATCAAGGTGTGAAGAGACTGGCACAAAGATT 781
|||||||| |||| || | | ||||||||||||||||||||||||||||| ||| | ||
Sbjct 648 ATGGAGATAATGGTGAACTCG-TATCACCATCAAGGTGTGAAGAGACTGGCGCAACGTTT 706
Query 782 TGTGCCAATGGCTTTTGCTGCTGATGGGTTAATGGAAGGTTTTTACGATCCGGAT-GCGT 840
|| ||| ||||||| ||| ||||||| || || ||||| ||||| |||||| || || |
Sbjct 707 TGCGCCCATGGCTTACGCTCCTGATGGTTTGATTGAAGGATTTTATGATCCGAATCGC-T 765
Query 841 ATAATCCTGAAG-AAGGG-AAGTTCATAATGGGTTTACAGTTTCATCCAGAGAGAATGAG 898
|| |||| ||| |||| || ||| | |||||| | ||||||||||| ||||| |||||
Sbjct 766 ATGATCCA-AAGGAAGGTCAA-TTCTTGATGGGTCTGCAGTTTCATCCCGAGAGGATGAG 823
Query 899 ACAA-CATGATCTTGATGAGTTTGATTATCCTGGTTGTC-CTGCT-GCTTATCAGGAGTT 955
| | | ||| ||||||||||||||||| || || | || | | ||||||||||||
Sbjct 824 GCTTTCGGGCTCT-GATGAGTTTGATTATCCAGGCTG-CGCTT-TAGTTTATCAGGAGTT 880
Query 956 TGC-AAAGGCGGTGATTGCGTACCAGAAGAA 985
|| |||| | ||||| || | ||||||||
Sbjct 881 TGTGAAAG-CTGTGATCGCATTTCAGAAGAA 910
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63724979885
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5