BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G38210.1
Length=2345
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494159 jgi|Araly1|494159|fgenesh2_kg.7__3592__AT5G38210.1 2981 0.0
Ahg948047 jgi|Araly1|948047|scaffold_704276.1 695 0.0
> Ahg494159 jgi|Araly1|494159|fgenesh2_kg.7__3592__AT5G38210.1
Length=2141
Score = 2981 bits (1614), Expect = 0.0
Identities = 1962/2125 (92%), Gaps = 43/2125 (2%)
Strand=Plus/Plus
Query 2 AAAAAGAAACTACTTTCCAGATATCAATCATGTTCTCTCCAGTACTCTTCAGATTCTCAA 61
|||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1 AAAAAGAAACTACTTTTCAGATATCAATCATGTTCTCTCCACTACTCTTCAGATTCTCAA 60
Query 62 AACCTAATTCTTTTCTGGTCCTTCTCTTCTTCTTATCC-TATATTCACTTTCTTCCTTGT 120
|||||||||||||||||||||||||||||||||| ||| | | || ||| ||||||||||
Sbjct 61 AACCTAATTCTTTTCTGGTCCTTCTCTTCTTCTTGTCCTTCT-TTAACTGTCTTCCTTGT 119
Query 121 GCTCAAAGTCAACGAGAACCATGTGACACTCTGTTTCGTTGTGGGGATCTCACAGCCGGT 180
|||| ||||||||||||||||||||| |||||||||||||||||| ||||||||||||||
Sbjct 120 GCTCTAAGTCAACGAGAACCATGTGATACTCTGTTTCGTTGTGGGAATCTCACAGCCGGT 179
Query 181 TTCCCTTTCTGGGGAGTGGCTCGGCCCCAACCTTGTGGTCATCCATCTTTAGGACTTCAC 240
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 180 TTCCCTTTCTGGGGAGTGGCTCGGCCCCAACCTTGTGGTCATCCATCTTTAGGGCTTCAC 239
Query 241 TGCCAA-AAACAAAC-AA----A----TTCGACTTCTCTAATCATCTCAAGTCTGATGTA 290
|| ||| |||||| | || | |||||||||||||||||||||| ||||||||||
Sbjct 240 TG-CAATAAACAATCGAATTCGACTTCTTCGACTTCTCTAATCATCTCAGGTCTGATGTA 298
Query 291 CCGTGTTCTCGAAGTAAATA-C-C-ACTACTAGTACTCTTAAATTAGTAAGGCAAGACTT 347
|||||||||||||||||||| | | | || || |||||||||||||||||||||||||||
Sbjct 299 CCGTGTTCTCGAAGTAAATATCACAAATAGTACTACTCTTAAATTAGTAAGGCAAGACTT 358
Query 348 TTCAGGTCCATTCTGCTCGGCTTCATTCAGCGGAGCAACGTTGACTCCTGAACTTTTTGA 407
||||||||||||||||||||||||||||||||| ||||||||| |||||||||| |||||
Sbjct 359 TTCAGGTCCATTCTGCTCGGCTTCATTCAGCGGTGCAACGTTGGCTCCTGAACTCTTTGA 418
Query 408 GCTTTTGCCAGACTACAAGACCCTCTCCGCTTACTACCTCTGCAACCCT-AGTCTTCACT 466
||||||||| ||||||||||||||||||||||||||||||||||||||| | |||||| |
Sbjct 419 GCTTTTGCCGGACTACAAGACCCTCTCCGCTTACTACCTCTGCAACCCTCA-TCTTCATT 477
Query 467 ATCCTGCGAAATTCATATGTCCAAATAAGGGTGTTGGCTCAATACATCAGGATGATTTGT 526
|||||||||| |||| ||||||||||||||||||||||| || |||||||||||||||
Sbjct 478 ATCCTGCGAATTTCACATGTCCAAATAAGGGTGTTGGCTTGATGTATCAGGATGATTTGT 537
Query 527 ATCACAATCACTGTGGTGGGATTTTCAACATCACTGTTCCCATAGGTTATGCTCCAGAGG 586
|||||||| |||||||||||| |||||||||||||||||| ||||||||||| |||||||
Sbjct 538 ATCACAATAACTGTGGTGGGAGTTTCAACATCACTGTTCCGATAGGTTATGCCCCAGAGG 597
Query 587 AAGG-AGCTTTGAATGTAACCAATTTGGAAAGTGTTCTTAAAAAAGGATTTGAGGTGAAA 645
||| || |||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 598 -AGGAAGGTTTGAATGTAACCAATTTGGAAAGTGTTCTTAAAAAAGGATTCGAGGTGAAG 656
Query 646 CTTAGCATCGATGAGAGACCGTGTCAAGAATGTAAAACCAATGGTGGAATCTGCGCCTAC 705
|| || || || |||||||||||| ||||||||||| ||| ||||||||| |||||||||
Sbjct 657 CTGAGTATTGACGAGAGACCGTGTAAAGAATGTAAATCCACTGGTGGAATTTGCGCCTAC 716
Query 706 CATGTTGCAACTCCGGTTTGCTGCAAGACAAACTCGTCATCAGAAGTC-AATTGCACT-C 763
|| |||||||||||||||||||||||||||||||||||||||||| || || |||| | |
Sbjct 717 CAGGTTGCAACTCCGGTTTGCTGCAAGACAAACTCGTCATCAGAACTCGAA-TGCA-TCC 774
Query 764 CAATGATGCCATCTGGATCTAGTGCTCATGCAGGTCTCTCCAAAAAAGGGAAAATAGGCA 823
||||||| ||||| |||||||||| ||| ||||||||||||||||||| |||||| ||||
Sbjct 775 CAATGATTCCATCAGGATCTAGTGTTCAAGCAGGTCTCTCCAAAAAAGCGAAAATTGGCA 834
Query 824 TCGGATTCGCTTCTGGATTCTTGGGTGCCACACTTATCGGCGGATGTTTACTCTGTATCT 883
| ||||||||||||||||||||||||||||| ||||| ||||||||||| |||||||||
Sbjct 835 TTGGATTCGCTTCTGGATTCTTGGGTGCCACTCTTATAGGCGGATGTTTGTTCTGTATCT 894
Query 884 TCATCCGGAGAAGGAAGAAACTAGCAACACAATACACAAACAAAGGCCTATCAACAACAA 943
|||||||| ||||||||||||| ||| |||||||||||| |||||||||||||||||| |
Sbjct 895 TCATCCGGCGAAGGAAGAAACTTGCAGCACAATACACAAGCAAAGGCCTATCAACAAC-A 953
Query 944 CACCTTACTCAAGCAATTATACAATGTCAAACACTCCAACCTCCACAACAATCTCTGGCA 1003
| | ||| | | | ||||||||||||||||||| ||||||||||| |||||||
Sbjct 954 -A-C-GACT-TA-C-----T-CAATGTCAAACACTCCAACTTCCACAACAATATCTGGCA 1002
Query 1004 GCAATCACTCTCTTGTACCTTCAATATCTAACCTTGGAAACGGAAGCGTCTACTCTGGAA 1063
|||||||||||||| |||||||||| |||||||||| ||| ||||||||||||| ||||
Sbjct 1003 GCAATCACTCTCTTATACCTTCAATGTCTAACCTTGCAAATGGAAGCGTCTACTTTGGAG 1062
Query 1064 TTCAAGTCTTCAGCTACGAAGAACTCGAGGAAGCCACTGAAAATTTCTCCAAAGAACTCG 1123
|||||||||||||||||||||||||||| ||||||||||| |||||||| ||||| || |
Sbjct 1063 TTCAAGTCTTCAGCTACGAAGAACTCGAAGAAGCCACTGAGAATTTCTCTAAAGAGCTTG 1122
Query 1124 GAGATGGAGGCTTCGGTACTGTCTACTACGGTACACTAAAAGACGGACGAGCAGTAGCTG 1183
|||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||
Sbjct 1123 GAGATGGAGGCTTCGGTACTGTCTACTACGGTGTACTAAAAGACGGACGAGCTGTAGCTG 1182
Query 1184 TGAAACGACTCTTCGAAAGATCACTAAAACGCGTGGAACAATTCAAGAACGAAATCGATA 1243
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1183 TAAAACGACTCTTCGAAAGATCACTAAAACGCGTGGAACAATTCAAGAACGAAATCGAGA 1242
Query 1244 TCTTGAAATCCCTAAAACACCCGAACCTAGTGATTCTATACGGATGCACAACAAGACATA 1303
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1243 TCTTGAAATCCTTAAAACACCCGAACCTAGTGATTCTATACGGATGCACAACAAGACATA 1302
Query 1304 GCAGAGAGTTACTCCTAGTATACGAATACATCTCCAATGGCACACTCGCTGAACATCTCC 1363
||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct 1303 GCAGAGAGTTACTCCTAGTCTACGAATACATTTCCAATGGCACACTCGCTGAACATCTCC 1362
Query 1364 ATGGAAACCAAGCACAATCTCGCCCTATTTGTTGGCCTGCTCGACTCCAAATAGCCATCG 1423
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1363 ATGGAAACCAAGCACAATCTCGCCCTATTTGTTGGCCTGCTCGACTCCAAATCGCCATCG 1422
Query 1424 AAACCGCTAGCGCCTTGTCCTATCTCCACGCCTCAGGGATCATACACAGAGACGTTAAGA 1483
||||||| ||||| ||||||||||||||| |||||||||||||||||||||| || || |
Sbjct 1423 AAACCGCAAGCGCATTGTCCTATCTCCACACCTCAGGGATCATACACAGAGATGTCAAAA 1482
Query 1484 CTACTAACATTC-TCTTAGATAGCAATTACCAAGTCAAAGTAGCTGATTTCGGACTCTCA 1542
|||||||||||| || ||||||||||||||||||| |||||||| ||||||||||| ||
Sbjct 1483 CTACTAACATTCTTC-TAGATAGCAATTACCAAGTGAAAGTAGCCGATTTCGGACTTTCG 1541
Query 1543 CGGTTGTTTCCGATGGATCAAACTCACATCTCCACTGCTCCACAAGGTACTCCAGGATAT 1602
||||||||||||| |||||||||||| |||||||| || |||||||||||||| ||||||
Sbjct 1542 CGGTTGTTTCCGACGGATCAAACTCATATCTCCACCGCACCACAAGGTACTCCGGGATAT 1601
Query 1603 GTAGATCCTGAGTATTACCAATGTTACCGAT-TAAACGAGAAGAGTGACGTTTACAGCTT 1661
||||||||||||||||||||||||||||| | ||||||||||||| ||||| ||||||||
Sbjct 1602 GTAGATCCTGAGTATTACCAATGTTACCG-TCTAAACGAGAAGAGCGACGTATACAGCTT 1660
Query 1662 CGGAGTCGTACTCTCCGAACTAATCTCATCGAAAGAAGCTGTTGATATCACCAGACACCG 1721
||||||||| |||||||||||||||||||| |||||||| || |||||||||||||||||
Sbjct 1661 CGGAGTCGTCCTCTCCGAACTAATCTCATCAAAAGAAGCCGTCGATATCACCAGACACCG 1720
Query 1722 CCACGATATTAACCTCGCCAACATGGCGATTTCGAAAATCCAAAACGACGCCGTACATGA 1781
||||||||||||||| || ||||||||||||||||||||||||||||||||||| || ||
Sbjct 1721 CCACGATATTAACCTAGCGAACATGGCGATTTCGAAAATCCAAAACGACGCCGTTCACGA 1780
Query 1782 GCTCGCGGATCTATCACTCGGATTCGCGAGAGATCCTTCGGTGAAGAAGATGATGTCGTC 1841
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1781 ACTCGCGGATCTATCACTCGGATTCGCGAGAGATCCTTCGGTGAAGAAGATGATGTCGTC 1840
Query 1842 GGTTGCTGAATTAGCATTCCGATGTTTGCAACAGGAGAGAGACGTACGGCCATCGATGGA 1901
||||||||||||||| ||||| ||||||||||| |||||||| ||||| |||||||||||
Sbjct 1841 GGTTGCTGAATTAGCGTTCCGGTGTTTGCAACAAGAGAGAGAAGTACGACCATCGATGGA 1900
Query 1902 TGAGATCGTTGAGGTTTTGAGAGTGATTCAGAAGGATGGGA-TAAGTGATTCGAAGGATG 1960
||||||||||||| ||||||||| |||||||||||| |||| ||| |||||||||||||
Sbjct 1901 TGAGATCGTTGAGATTTTGAGAGGGATTCAGAAGGAAGGGATTAA-AGATTCGAAGGATG 1959
Query 1961 TGGTTGTGGAGATTGATGTGAACGGTGGTGATGATGTTGGATTGTTGAAGCATGGTGTTC 2020
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1960 TGGTGGTGGAGATTGATGTGAACGGTGGTGATGATGTTGGATTGTTGAAGCATGGTGTTC 2019
Query 2021 CTCCGCCGTTATCGCCGGAGACTGATAAAACGACGGCGAGTAGTTCGAATACTACGGCGA 2080
|||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||
Sbjct 2020 CTCCGCCGTTATCGCCGGAGACTGATAAAATGACGGCGAGTAGTTCGAATACGACGGCGA 2079
Query 2081 GTTCGTTTTGAA-GAGAGTAGGAAG 2104
|||||||||||| ||||||||||||
Sbjct 2080 GTTCGTTTTGAAAGAGAGTAGGAAG 2104
> Ahg948047 jgi|Araly1|948047|scaffold_704276.1
Length=794
Score = 695 bits (376), Expect = 0.0
Identities = 469/513 (91%), Gaps = 9/513 (2%)
Strand=Plus/Plus
Query 277 TCAA-GTCTGATGTACCGTGTTCTCGAAGTAAATACCACTACTAGTACTCTTAAATTAGT 335
|||| |||| ||||||||||||||||||||||| | ||| ||||||||||||||||||||
Sbjct 227 TCAATGTCTTATGTACCGTGTTCTCGAAGTAAACATCACAACTAGTACTCTTAAATTAGT 286
Query 336 AAGGCAAGACTTTTCAGGTCCATTCTGCTCGGCTTCATTCAGCGGAGCAACGTTGACTCC 395
||||||||||||||||||||||||||||||| ||||||||| ||||||| |||||||||
Sbjct 287 AAGGCAAGACTTTTCAGGTCCATTCTGCTCGATTTCATTCAGTGGAGCAATGTTGACTCC 346
Query 396 TGAACTTTTTGAGCTTTTGCCAGACTACAAGACCCTCTCCGCTTACTACCTCTGCAACCC 455
||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 347 CGAACTCTTTGAGCTTTTGCCAGACTACAAGACCCTCTCCGCTTACTACCTCTGTAACCC 406
Query 456 TAGTCTTCACTATCCTGCGAAATTCATATGTCCAAATAAGGGTGTTGGCTCAAT-ACATC 514
| ||||||||||||||||||| |||| |||| ||||||||||||||||||| || | |||
Sbjct 407 TCGTCTTCACTATCCTGCGAATTTCACATGTTCAAATAAGGGTGTTGGCTCGATGA-ATC 465
Query 515 AGGATGATTTGTATCACAATCACTGTGGTGGGATTTTCAACATCACTGTTCCCATAGGTT 574
|||||||||| ||||||||||||||||||||| |||||||||||||||||| |||||||
Sbjct 466 AGGATGATTTCAATCACAATCACTGTGGTGGGAGTTTCAACATCACTGTTCCTATAGGTT 525
Query 575 ATGCTCCAGAGGAAGGA-GCTTTGAATGTAACCAATTTGGAAAGTGTTCTTAAAAAAGGA 633
|||| |||||||| ||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct 526 ATGCCCCAGAGGA-GGAAGGTTTGAATGTAACCAATTTGGAAAGTGTTCTTAAAAAAGGA 584
Query 634 TTTGAGGTGAAACTTAGCATCGATGAGAGACCGTGTCAAGAATGTAAAACCAATGGTGGA 693
|| ||||||||||| | || |||||||||||||||| |||||||||| ||| |||||||
Sbjct 585 TTCGAGGTGAAACTAAATATTGATGAGAGACCGTGTCGAGAATGTAAATCCACTGGTGGA 644
Query 694 ATCTGCGCCTACCATGTTGCAACTCCGGTTTGCTGCAAGACAAACTCGTCATCAGAAGTC 753
|||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 645 ATCTGCTCCTACGATGTTGCAACTCCGGTTTGCTGCAAGACAAACTCGTCATCAGAACTC 704
Query 754 -AATTGCACTCC-AATGATGCCATCTGGATCTA 784
||| ||| ||| |||||| ||||| |||||||
Sbjct 705 GAAT-GCA-TCCCAATGATTCCATCAGGATCTA 735
Score = 298 bits (161), Expect = 1e-79
Identities = 211/234 (90%), Gaps = 7/234 (3%)
Strand=Plus/Plus
Query 8 AAACTACTTTCCAGATATCAATCATGTTCTCTCCAGTACTCTTCAGATTCTCAAAACCTA 67
|||||| || |||| ||||||||||||||||||| |||||||||||||||||||||| |
Sbjct 1 AAACTA--TT-CAGAGATCAATCATGTTCTCTCCATTACTCTTCAGATTCTCAAAACCCA 57
Query 68 ATTCTTT-TCTGGTCCTTCTCTTCTTCTTATCC-TATATTCACTTTCTTCCTTGTGCTCA 125
||| ||| ||| ||| ||||||| ||||| ||| | | || ||| ||||||||||||||
Sbjct 58 ATT-TTTGTCTAGTCTTTCTCTTGTTCTTGTCCTTCT-TTAACTGTCTTCCTTGTGCTCT 115
Query 126 AAGTCAACGAGAACCATGTGACACTCTGTTTCGTTGTGGGGATCTCACAGCCGGTTTCCC 185
||||||||||||||||||||| |||||||||||||| ||| |||||||||||||||||||
Sbjct 116 AAGTCAACGAGAACCATGTGATACTCTGTTTCGTTGCGGGAATCTCACAGCCGGTTTCCC 175
Query 186 TTTCTGGGGAGTGGCTCGGCCCCAACCTTGTGGTCATCCATCTTTAGGACTTCA 239
||||||||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 176 TTTCTGGGGAGTGGCTCGGCCTCAACCTTGTGGTCATCCATCTTTAGGGCTTCA 229
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 88331278155
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5