BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G38220.1
Length=1368
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494156 jgi|Araly1|494156|fgenesh2_kg.7__3589__AT5G38220.3 1703 0.0
Ahg925912 jgi|Araly1|925912|scaffold_201473.1 745 0.0
> Ahg494156 jgi|Araly1|494156|fgenesh2_kg.7__3589__AT5G38220.3
Length=1322
Score = 1703 bits (922), Expect = 0.0
Identities = 1089/1167 (93%), Gaps = 21/1167 (2%)
Strand=Plus/Plus
Query 1 CTCCTTTCTCCATCGTTCTATCATTTTCTCCTT-TCCTTCACCTCAAGATCTCAAAAACA 59
||||||| |||||||| |||||||||||||||| | ||||||||||||||||| |||| |
Sbjct 40 CTCCTTTTTCCATCGTCCTATCATTTTCTCCTTCTTCTTCACCTCAAGATCTC-AAAA-A 97
Query 60 CAAAAAGAGAAATCAATCAAAACCTTAGGGTTTTCTACTAATTTATCTGTGTGATGTTAA 119
|||||||| ||||||||||||||||||||| ||||| ||||||||| ||||||||| | |
Sbjct 98 CAAAAAGATAAATCAATCAAAACCTTAGGG-TTTCTTCTAATTTATGTGTGTGATGAT-A 155
Query 120 GAGAATCATCATCATCTTCGTCGTCATGGGAGGAGTAACTTCATCAATCGCTGCAAAATT 179
|| | || |||| || ||||||||||||||||||||||||||||||| ||||||||
Sbjct 156 -AG-A-CA--ATCA---TCATCGTCATGGGAGGAGTAACTTCATCAATCGCAGCAAAATT 207
Query 180 CGCTTTTTTCCCGCCATCACCACCGTCTTATGGATTTGTTTCCGACGTTGACCGATTATA 239
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 208 CGCTTTTTTCCCGCCATCACCACCGTCTTACGGATTTGTTTCCGACGTTGACCGATTATA 267
Query 240 CATAACAGAAGTACCTCGCCGTGATGATGTAGATGTATTGAAGCTAAAGACTCGTCGTGG 299
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 268 TATAACAGAAGTACCTCGCCGTGATGATGTTGATGTATTGAAGCTAAAGACTCGTCGTGG 327
Query 300 TAACGAGATTGTAGCTATTTATATTAAACATCCTAAAGCTAATGGTACGCTTTTGTATTC 359
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 328 TAACGAGATTGTAGCTATTTATATTAAGCATCCTAAAGCTAATGGTACGCTTTTGTACTC 387
Query 360 ACATGGTAACGCTGCTGATTTGGGTCAAATGTTTGAGCTTTTTATCGAACTTAGTAATCG 419
|||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct 388 ACATGGTAACGCTGCTGATTTGGGTCAAATGTTTGAGCTTTTCGTTGAACTTAGTAATCG 447
Query 420 TCTCCGACTTAATCTCATGGGGTATGATTACTCTGGTTATGGTCAGTCTACTGGAAAGGC 479
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 448 TCTCCGACTTAATCTCATGGGGTATGATTACTCTGGTTATGGTCAGTCTACGGGAAAGGC 507
Query 480 AAGTGAATGTAATACCTATGCTGATATAGATGCAGCATATACTTGCCTCAAGGAACATTA 539
||||||||||||||| |||||||||||||||||| ||||||| |||||||||||||||||
Sbjct 508 AAGTGAATGTAATACATATGCTGATATAGATGCATCATATACCTGCCTCAAGGAACATTA 567
Query 540 TGGTGTAAAAGATGATCAACTGATATTATATGGTCAGTCTGTTGGTAGTGGACCAACGAT 599
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 568 TGGTGTTAAAGATGATCAACTGATATTATATGGTCAGTCTGTTGGTAGTGGACCAACGAT 627
Query 600 TGATTTAGCTTCACGCACGCCTAATTTGCGAGGAGTGGTTTTGCACAGCCCTATTCTCTC 659
|||| ||||||| |||||||||||||| |||| ||||||||||||||||||||||| ||
Sbjct 628 TGATCTAGCTTCGCGCACGCCTAATTTAAGAGGGGTGGTTTTGCACAGCCCTATTCTGTC 687
Query 660 TGGGATGAGAGTTTTGTATCCGGTTAAACGTACCTATTGGTTTGACATTTACAAGAATAT 719
|||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 688 TGGGATTAGAGTTTTGTATCCGGTTAAACGTACATATTGGTTTGACATTTACAAGAATAT 747
Query 720 TGACAAGATCGGTGCAGTTACCTGTCCTGTCTTAGTAATCCATGGGACTGCAGATGAAGT 779
|| |||||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 748 CGATAAGATCGGTGCAGTGACATGTCCTGTCTTAGTAATCCATGGGACTGCAGATGAAGT 807
Query 780 GGTTGATTGTTCTCATGGAAAACAACTTTGGGAACTTTCAAAAGAAAAGTATGAGCCTTT 839
|||||||||||||||||||||||| |||||||||||||||||||| |||||||| |||||
Sbjct 808 GGTTGATTGTTCTCATGGAAAACAGCTTTGGGAACTTTCAAAAGAGAAGTATGAACCTTT 867
Query 840 ATGGGTATCTGGAGGAGGACACTGCAATCTAGAACTCTATCCAGAGTTCATAAAACATCT 899
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 868 ATGGGTATCTGGAGGAGGACACTGCAATCTAGAACTCTATCCAGAGTTCATAAAACATCT 927
Query 900 GAAGAAATACGTAATTTCTATTTCCAA------GGGACCAAGAACTGGTTCGAACAAGAC 953
|||||||| |||||| || |||||||| ||||||||||| |||||||||||||||
Sbjct 928 GAAGAAATTCGTAATCTCGATTTCCAAACCCAAGGGACCAAGAAATGGTTCGAACAAGAC 987
Query 954 TGCAACGACGGATGCAGCCAAAAAACAGAGCAAGCCTGCAGAGAACGGGCGTGCTGATAC 1013
|| |||||||||| || ||||||| ||||| |||||| |||||||||| ||| |||||||
Sbjct 988 TGTAACGACGGATACAACCAAAAACCAGAGTAAGCCTTCAGAGAACGGTCGTTCTGATAC 1047
Query 1014 GTTTCAACTTGGCTGTTGCCTTCCAGAAGTTTCTAGAAACAGTGTAGACAGTCAGCTGGA 1073
|||||||| || || ||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 1048 ATTTCAACTCGGTTGCTGCCTCCCAGAAGTTTCTAGAAACAGCGTAGACAGTCAGCTGGA 1107
Query 1074 GAAATCTAAGAAGACTAGTAAACCCGAGAAGTCTCGTATGAGCATTGATAGGTTTAGAAG 1133
||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 1108 GAAATCTAAGAAGACTAGTAAACCCGAGAAGTCCCGAATGAGCATTGATAGGTTTAGAAG 1167
Query 1134 GAAAAAAGGT-TCAGTCTGGTGACATA 1159
|||||||||| | ||||||||||||||
Sbjct 1168 GAAAAAAGGTCT-AGTCTGGTGACATA 1193
Score = 154 bits (83), Expect = 2e-36
Identities = 98/105 (93%), Gaps = 2/105 (2%)
Strand=Plus/Plus
Query 1265 TTGTGTATGTATTTTCTAATAGAAACAGATCAAACTCAAAAGTCTTGATTTCATATTTGG 1324
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1218 TTGTGTATGTATTTTCTGATAGAAACAGATCAAACTCAAAAGTCTTGATTTCATATTTGG 1277
Query 1325 TTGTAACTTTGTCATGGTACAAAA-CTTGTAATCACTGACAAGTT 1368
|||||||||| |||||||||||| || ||||| |||||| ||||
Sbjct 1278 TTGTAACTTTTTCATGGTACAAATGCT-GTAATGACTGACTAGTT 1321
> Ahg925912 jgi|Araly1|925912|scaffold_201473.1
Length=873
Score = 745 bits (403), Expect = 0.0
Identities = 659/781 (84%), Gaps = 23/781 (3%)
Strand=Plus/Plus
Query 143 TCATGGGAGGAGTAACTTCATCAATCGCTGCAAAATTCGCTTT-TTTCCCGCCATCACCA 201
|||||||||| ||||| ||||| |||||||||||||||||||| ||| || ||| | |||
Sbjct 19 TCATGGGAGGTGTAACATCATCGATCGCTGCAAAATTCGCTTTCTTT-CCACCAACTCCA 77
Query 202 CCGTCTTATGGA-TTTGTTTCCGACG-T---T--GAC---CGATTATACATAACAGAAG- 250
|||||||| || || | |||||| | | | | || |||||||| || | ||
Sbjct 78 CCGTCTTA-CGAGGTTATAGCCGACGATAGCTGCGGCGGACGTTTATACAT-ACCGGAGA 135
Query 251 TACCTCGCCGTGATGATGTAGATGTATTGAAGCTAAAG-ACTCGTCGTGGTAACGAGATT 309
| ||||| ||||||||||| ||| | || ||||| | | |||||| ||||||| |||||
Sbjct 136 TTCCTCGTCGTGATGATGTTGATATCTTAAAGCT-ACGTACTCGTTGTGGTAATGAGATC 194
Query 310 GTAGCTATTTATATTAAACATCCTAAAGCTAATGGTACGCTTTTGTATTCACATGGTAAC 369
|||||| ||||| | |||||| | ||||||||||| |||||||||||||| |||||||||
Sbjct 195 GTAGCTGTTTATGTGAAACATTCAAAAGCTAATGGCACGCTTTTGTATTCTCATGGTAAC 254
Query 370 GCTGCTGATTTGGGTCAAATGTTTGAGCTTTTTATCGAACTTAGTAATCGTCTCCGACTT 429
|||||||||||||||||||||||||||||||| | || ||||| ||||| || || | |
Sbjct 255 GCTGCTGATTTGGGTCAAATGTTTGAGCTTTTCGTTGAGCTTAGCAATCGCCTTCG-CGT 313
Query 430 -AATCTCATGGGGTATGATTACTCTGGTTATGGTCAGTCTACTGGAAAGGCAAGTGAATG 488
||||| ||||||||||||||||||||||||||||||||||||||| ||||||| || ||
Sbjct 314 CAATCTTATGGGGTATGATTACTCTGGTTATGGTCAGTCTACTGGACAGGCAAGCGAGTG 373
Query 489 TAATACCTATGCTGATATAGATGCAG-CATATACTTGCCTCAAGGAACATTATGGTGTAA 547
|||||| |||||||||||||| || | | |||| ||||| |||||| | ||||||||||
Sbjct 374 TAATACATATGCTGATATAGAGGC-GTCGTATAAGTGCCTTAAGGAAAAGTATGGTGTAA 432
Query 548 AAGATGATCAACTGATATTATATGGTCAGTCTGTTGGTAGTGGACCAACGATTGATTTAG 607
|||| |||||||||||| |||||||||| ||||| ||||||||||| ||| ||||| |||
Sbjct 433 AAGACGATCAACTGATACTATATGGTCAATCTGTCGGTAGTGGACCTACGGTTGATCTAG 492
Query 608 CTTCACGCACGCCTAATTTGCGAGGAGTGGTTTTGCACAGCCCTATTCTCTCTGGGATGA 667
|||| ||||| ||||| |||||||| |||||||| || |||| ||||| ||||||||||
Sbjct 493 CTTCGCGCACACCTAACTTGCGAGGCGTGGTTTTACAGTGCCCGATTCTGTCTGGGATGA 552
Query 668 GAGTTTTGTATCCGGTTAAACGTACCTATTGGTTTGACATTTACAAGAATATTGACAAGA 727
| |||||||||||||| ||| |||| ||||||||||| |||||||||||||||||||| |
Sbjct 553 GGGTTTTGTATCCGGTGAAATGTACATATTGGTTTGATATTTACAAGAATATTGACAAAA 612
Query 728 TCGGTGCAGTTACCTGTCCTGTCTTAGTAATCCATGGGACTGCAGATGAAGTGGTTGATT 787
|||| ||||||||||||||||| |||||||||||||| ||||| |||||||| |||||||
Sbjct 613 TCGGCGCAGTTACCTGTCCTGTATTAGTAATCCATGGAACTGCGGATGAAGTAGTTGATT 672
Query 788 GTTCTCATGGAAAACAACTTTGGGAACTTT-CAAAAGAAAAGTATGAGCCTTTATGGGTA 846
| ||||| ||||||| || |||||||| |||| || |||||||| ||||| ||| ||
Sbjct 673 GGTCTCACGGAAAACGGCTCTGGGAACTCAGCAAA-GAGAAGTATGAACCTTTGTGGATA 731
Query 847 TCTGGAGGAGGACACTGCAATCTAGAACTCTATCCAGAGTTCATAAAACATCTGAAGAAA 906
|||||| ||||||||| | || |||||||||||||| ||||| | |||||||||||||
Sbjct 732 AGTGGAGGTGGACACTGCGACCTTGAACTCTATCCAGATTTCATCAGACATCTGAAGAAA 791
Query 907 T 907
|
Sbjct 792 T 792
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51199077531
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5