BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G38230.1 Length=2441 Score E Sequences producing significant alignments: (Bits) Value Ahg948049 jgi|Araly1|948049|scaffold_704278.1 333 4e-90 > Ahg948049 jgi|Araly1|948049|scaffold_704278.1 Length=408 Score = 333 bits (180), Expect = 4e-90 Identities = 271/314 (86%), Gaps = 9/314 (3%) Strand=Plus/Plus Query 1 ATGATTTCCATAGAGGGTATGAGTATTCTTGATGCGATCTTTCACATCAAGAACCAAATA 60 ||||||||||| ||||| |||||||||||||||||||||||||||||||||||| ||||| Sbjct 23 ATGATTTCCATCGAGGGGATGAGTATTCTTGATGCGATCTTTCACATCAAGAACGAAATA 82 Query 61 AACATTGTCCAGAAAGAAATCGATTCATTAGGCCACGCG-GAAGCAAAGTTCCCAATG-T 118 |||||| ||||||||||||||||||||| ||||||| | |||||||| ||||| | | Sbjct 83 AACATTCTCCAGAAAGAAATCGATTCATCAGGCCAC-CTAGAAGCAAAAATCCCACTCAT 141 Query 119 CTATGTCTTTTCTCAGTGAAGCAAAATCCAAGCTGCAACAAGAGCTCAATGATCAGGAAA 178 |||| |||| ||||||| | ||||||||||||||||||||||||| |||||||||||| Sbjct 142 -TATGGCTTTGGTCAGTGATGAAAAATCCAAGCTGCAACAAGAGCTCGATGATCAGGAAA 200 Query 179 ACAAGGCGAGACAGGCTTGCAAGGACATCGGACTTACTACTAGGGAAGACTTCACAATGC 238 |||||||||||||| |||||| ||| |||||||| |||||| |||||||||| |||||| Sbjct 201 ACAAGGCGAGACAGATTTGCAAAGACCTCGGACTTTCTACTACGGAAGACTTCCCAATGC 260 Query 239 TTTGCAAGAAGTGGTCGGAATTCCACATAGGAAAGAGTACCTAGCA--A-TGCTCAAGCC 295 ||||| || || |||||||| | | || |||||||||||||||| | || || |||| Sbjct 261 TTTGCGAG--GTTCTCGGAATTTCTCCTACGAAAGAGTACCTAGCAGCAGTGTTCGAGCC 318 Query 296 GTACATGTTTGCTT 309 ||||||| ||||| Sbjct 319 ATACATGTCTGCTT 332 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 91987941675 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5