BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G38230.1
Length=2441
Score E
Sequences producing significant alignments: (Bits) Value
Ahg948049 jgi|Araly1|948049|scaffold_704278.1 333 4e-90
> Ahg948049 jgi|Araly1|948049|scaffold_704278.1
Length=408
Score = 333 bits (180), Expect = 4e-90
Identities = 271/314 (86%), Gaps = 9/314 (3%)
Strand=Plus/Plus
Query 1 ATGATTTCCATAGAGGGTATGAGTATTCTTGATGCGATCTTTCACATCAAGAACCAAATA 60
||||||||||| ||||| |||||||||||||||||||||||||||||||||||| |||||
Sbjct 23 ATGATTTCCATCGAGGGGATGAGTATTCTTGATGCGATCTTTCACATCAAGAACGAAATA 82
Query 61 AACATTGTCCAGAAAGAAATCGATTCATTAGGCCACGCG-GAAGCAAAGTTCCCAATG-T 118
|||||| ||||||||||||||||||||| ||||||| | |||||||| ||||| | |
Sbjct 83 AACATTCTCCAGAAAGAAATCGATTCATCAGGCCAC-CTAGAAGCAAAAATCCCACTCAT 141
Query 119 CTATGTCTTTTCTCAGTGAAGCAAAATCCAAGCTGCAACAAGAGCTCAATGATCAGGAAA 178
|||| |||| ||||||| | ||||||||||||||||||||||||| ||||||||||||
Sbjct 142 -TATGGCTTTGGTCAGTGATGAAAAATCCAAGCTGCAACAAGAGCTCGATGATCAGGAAA 200
Query 179 ACAAGGCGAGACAGGCTTGCAAGGACATCGGACTTACTACTAGGGAAGACTTCACAATGC 238
|||||||||||||| |||||| ||| |||||||| |||||| |||||||||| ||||||
Sbjct 201 ACAAGGCGAGACAGATTTGCAAAGACCTCGGACTTTCTACTACGGAAGACTTCCCAATGC 260
Query 239 TTTGCAAGAAGTGGTCGGAATTCCACATAGGAAAGAGTACCTAGCA--A-TGCTCAAGCC 295
||||| || || |||||||| | | || |||||||||||||||| | || || ||||
Sbjct 261 TTTGCGAG--GTTCTCGGAATTTCTCCTACGAAAGAGTACCTAGCAGCAGTGTTCGAGCC 318
Query 296 GTACATGTTTGCTT 309
||||||| |||||
Sbjct 319 ATACATGTCTGCTT 332
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 91987941675
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5