BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G38270.1
Length=1221
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472265 jgi|Araly1|472265|fgenesh2_kg.1__2219__AT5G38270.1 1635 0.0
Ahg494155 jgi|Araly1|494155|fgenesh2_kg.7__3588__AT5G38270.1 1393 0.0
Ahg940704 jgi|Araly1|940704|scaffold_601248.1 743 0.0
Ahg896331 jgi|Araly1|896331|Al_scaffold_0005_297 466 2e-130
Ahg936150 jgi|Araly1|936150|scaffold_500341.1 459 3e-128
Ahg936152 jgi|Araly1|936152|scaffold_500343.1 412 2e-114
Ahg896329 jgi|Araly1|896329|Al_scaffold_0005_295 198 7e-50
Ahg480113 jgi|Araly1|480113|fgenesh2_kg.3__2814__AT2G04840.1 182 7e-45
> Ahg472265 jgi|Araly1|472265|fgenesh2_kg.1__2219__AT5G38270.1
Length=1221
Score = 1635 bits (885), Expect = 0.0
Identities = 1119/1231 (91%), Gaps = 20/1231 (2%)
Strand=Plus/Plus
Query 1 ATGTATACGCCAAACGATTCGATGAGAGAAGAGATAAGCCTAAAAGTGTTTGTAAATCAC 60
||| |||||||||| |||| |||||||||||||||||| |||||||||| || |||||||
Sbjct 1 ATGGATACGCCAAATGATTTGATGAGAGAAGAGATAAGACTAAAAGTGTCTGAAAATCAC 60
Query 61 GATTGGTCCAAACTTTGTCCCGATATCTTACGGTCGATCCTCGAAAGCTTGAGCTCTACT 120
||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||| |
Sbjct 61 AATTGGTCCAAACTTTGTCCCGATCTCTTACGGTCGATTCTCGAAAGCTTGAGCTCTATT 120
Query 121 GATTTTCACCGAGCAAAAACTGTTTGCTCAGATTGGTATTCAAATTGGAAAACATGCGTG 180
|||||| ||||||||||||| ||||||| |||||||||||||| ||||||||||||||||
Sbjct 121 GATTTTTACCGAGCAAAAACCGTTTGCTTAGATTGGTATTCAATTTGGAAAACATGCGTG 180
Query 181 AAGCCTCTTTGTCCATGGCGGATCATGTACGTAAAAGATTCATTGATGTTGTTCAAACCC 240
||||||||||||| |||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 181 AAGCCTCTTTGTCTATGGCGGATCATATACGTAAAAGATTCTTTGATGTTGTTCAAACCC 240
Query 241 GGAGAAGACAAGATTTACAAAGGAACAAACGTTGGACTCTCCAACGACAGCTATTATATG 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 GGAGAAGACAAGATTTACAAAGGAACAAACGTTGGACTCTCCAACGACAGCTATTATATG 300
Query 301 GCTAGCTCCGGAAACTGGCTCTTGATGGTAGATTCTCATCTCGGTTTCTACATTTTTAAC 360
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 301 GCTAGCTCCGGAAACTGGCTCTTGATGGTCGATTCTCATCTCGGTTTCTACATTTTTAAC 360
Query 361 CTGTTAACGAGCAAAAGAATTGATCTTCCATCAATGGAGTCTTCAATTCGCGGTGGAAAA 420
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 361 ATGTTAACGAGCAAAAGAATTGATCTTCCATCAATGGAGTCTTCAATTCGGGGTGGAAAT 420
Query 421 GTGAGATTCGAGCAAAACCACGAGCATGGATTCAACTGGGGACACTTTGTCGAACCTTCT 480
||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 421 GTGAGATTCGAGCGAAACCACGAGCATGGATTCATCTGGGGACACTTTGTCGAACCTTCT 480
Query 481 CGTAAGGTT-ACCGTGTCAAAAATAACCATCACACGGGAAAGTAGAGCTGTTCTGTGGAT 539
||||||| | || ||||||||| |||||| ||||| ||| | || ||||||||||||
Sbjct 481 CGTAAGGCTGAC-GTGTCAAAAGCCGCCATCATACGGGGAAGAACAGTTGTTCTGTGGAT 539
Query 540 AGACGAGAGAACAGGAGATTTTGTGGTTGCTTGGATTTTTAACTATCGTTACTTGTTCTC 599
|||||| ||||||||||||||| |||||||||||||||| ||||||||||||||||||||
Sbjct 540 AGACGAAAGAACAGGAGATTTTCTGGTTGCTTGGATTTTCAACTATCGTTACTTGTTCTC 599
Query 600 ATACAAGAAAGGAGATGATTCGTGGTGGAACTGGAATAACCATTGGAATATGGAAAGCTT 659
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||| | |
Sbjct 600 ATACAAGAAAGGAGATGATTCGTGGTGGAATTGGAATAACCATTGGAATATGGAAAACCT 659
Query 660 GAATTTAAGTTTTTTGG-ATTTGGCTTACAGAAACAGCAAGCTTTATATCTACATTACTA 718
||||| | |||||||| ||||||||| |||| ||| |||||||||| |||||| |||||
Sbjct 660 AAATTTCA-TTTTTTGGGATTTGGCTTGCAGATACAACAAGCTTTATCTCTACACTACTA 718
Query 719 A-GAGTCACATCAAAGTTGTTGATTTCTCTGGAAATGATCCCATAGAAGTAATCGATAAA 777
| | |||||||||||||| ||||||||||||||||||||||||||||||||||||| |||
Sbjct 719 ATG-GTCACATCAAAGTTATTGATTTCTCTGGAAATGATCCCATAGAAGTAATCGAAAAA 777
Query 778 AACCCGTATTGGGAACATCCGTTTCGATACTTAACCAAAAAAGGGGAATA-CATTAATAA 836
|||||||||||||||||||| |||||||||||||||||| ||| |||| | |||| | |
Sbjct 778 AACCCGTATTGGGAACATCCATTTCGATACTTAACCAAACAAGAGGAA-AGCATTCTTCA 836
Query 837 GAGGAGAATAGCGATTCAGAAATCAGGAGACGTTTTGATTATCTTGAGTGTATTAGCACA 896
|| ||||| ||||||||||||||||||||||||||||||||||||||| || | || |
Sbjct 837 TAGTAGAATCGCGATTCAGAAATCAGGAGACGTTTTGATTATCTTGAGTATAGTCTCA-A 895
Query 897 -AAGATCAAAAGAGAAAGTTTTATTTTACATCTTTAAGATGAATCTTGCGAGTAAAATAT 955
||| || | ||||| | ||| ||||| |||||||| ||||||||||| ||||||||||
Sbjct 896 TAAGTTCGACAGAGATACCTTTGTTTTATATCTTTAAAATGAATCTTGCAAGTAAAATAT 955
Query 956 GGGAAAGAGTAGAATCTATTGGAGATGATGAGATGTTGATCTTTGGTCATGGGGTTACGA 1015
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 956 GGGAGAGAGTAGAATCTATTGGAGATGATGAGATGTTGATCTTTGGTCATGGGGTTACAA 1015
Query 1016 TAAGAGCACCGGTTCAAGATGTTGGTGATGGAATCAAGAGTGGTTCAATATGTTTCGTCA 1075
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
Sbjct 1016 TAAGAGCACCGGTTCAAGATGTTGGTGATGGAATCAAGAGTGGTTCAATATATTTCGTTA 1075
Query 1076 --GT-GACGTATGGCCACCATATTATTCTCCTGCTGCTACAAATTGGGGTGTCTTCGATC 1132
| ||| ||||| || ||| ||| || ||||| | ||||||| |||||||||||||
Sbjct 1076 AAGAAGACTTATGGACA--ATAG-ATTTTCATGCTGTTTCAAATTGCGGTGTCTTCGATC 1132
Query 1133 TTGCAACAAGTATAATCAAATGGTCTAAG-AAAGACAGTTTTAATAATAGATATGTT-CA 1190
|||||||||||| |||||||||||||||| ||| ||||||||||||||| ||||||| ||
Sbjct 1133 TTGCAACAAGTAAAATCAAATGGTCTAAGGAAA-ACAGTTTTAATAATAAATATGTTACA 1191
Query 1191 AACTTATTTGTTTTTTCCAGGATTTGCTTAG 1221
| || | |||| ||||||||||| |||||
Sbjct 1192 A-CTCGGTGGTTTGTTCCAGGATTTTCTTAG 1221
> Ahg494155 jgi|Araly1|494155|fgenesh2_kg.7__3588__AT5G38270.1
Length=1236
Score = 1393 bits (754), Expect = 0.0
Identities = 1092/1250 (87%), Gaps = 43/1250 (3%)
Strand=Plus/Plus
Query 1 ATGTATACGCCAAACGATTCGATGAGAGAAGAGATA-AGCCTAAAAGTGTTTGTAAATCA 59
||| ||||||||||||||| ||||| |||||||| | || | |||||||| || ||||||
Sbjct 1 ATGGATACGCCAAACGATTTGATGAAAGAAGAGA-AGAGACGAAAAGTGTCTGAAAATCA 59
Query 60 CGATTGGTCCAAACTTTGTCCCGATATCTTACGGTCGATCCTCGAAAGCTTGAGCTCTAC 119
||||||||||||||||| ||| ||| | ||||||||||| ||||||||||||| |||||
Sbjct 60 CGATTGGTCCAAACTTTATCCTGATCTTTTACGGTCGATACTCGAAAGCTTGAACTCTAT 119
Query 120 TGATTTTCACCGAGCAAAAACTGTTTGCTCAGATTGGTATTCAAATTGGAAAACATGCGT 179
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 120 TGATTTTCACCGAGCAAAAACTGTTTGCTCAGATTGGTATTCAATTTGGAAAACATGCGT 179
Query 180 GAA--G-CCTCTTTGTCCATGGCGGATCATGTACGTAAAAGATTCATTGATGTTGTTCAA 236
||| | ||||||||||||||||||||||| ||||||||| |||| ||||||||||||||
Sbjct 180 GAAGCGTCCTCTTTGTCCATGGCGGATCATATACGTAAAATATTCTTTGATGTTGTTCAA 239
Query 237 ACCCGGAGAAGACAAGATTTACAAAGGAACAAACGTTGGACTCTCCAACGACAGCTATTA 296
||| ||||||||||||| ||| ||||||||||||||||||||||||| ||||||||||
Sbjct 240 TCCCCGAGAAGACAAGATCTACGAAGGAACAAACGTTGGACTCTCCAAAGACAGCTATTT 299
Query 297 TATGGCTAGCTCCGGAAACTGGCTCTTGATGGTAGATTCTCATCTCGGTTTCTACATTTT 356
||||||| ||||||| || |||||||||||||||||||||||||||| ||| ||||||||
Sbjct 300 TATGGCTGGCTCCGGGAATTGGCTCTTGATGGTAGATTCTCATCTCGATTTTTACATTTT 359
Query 357 TAACCTGTTAACG-AGCAAAAGAATTGATCTTCCATCAATGGAGTCTTCAATTCGCGGTG 415
||||||||||||| | ||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct 360 TAACCTGTTAACGTA-CAAAAGAATCGATCTTCCATCTATGGAGTCTTCAATTCGCGGTG 418
Query 416 GAAAAGTGAGATTCGAGCAAAACCACGAGCATGGATTCA---ACTGGGGACACTTTGTCG 472
| || ||||||||||||| ||||| |||||||||||||| | |||||||||||||| |
Sbjct 419 GGAATGTGAGATTCGAGCGAAACCGCGAGCATGGATTCAGCGAGTGGGGACACTTTGTTG 478
Query 473 AACCTTCTCGTAAGGTTACCGTGTCA-AAAATA-ACCATCACACG-GGAAAGTA-GAGCT 528
| || | |||||||| | |||| | ||| | | ||||| | | | ||| | ||||
Sbjct 479 ATCCATGTCGTAAGG--ATTGTGTGAGGAAAGACATCATCATATGCCG-AAG-ATCAGCT 534
Query 529 GTTCTGTGGATAGACGAGAGAACAGGAGATTTTGTGGTTGCTTGGATTTTTAACTATCGT 588
||| | |||||||| |||| ||||||||||| |||||||||||||||||| || |||| |
Sbjct 535 GTTTTATGGATAGATGAGAAAACAGGAGATTATGTGGTTGCTTGGATTTTCAATTATCAT 594
Query 589 TACTTGTTCTCATACAAGAAAGGAGATGATTCGTGGTGGAACTGGAATAACCATTGGAAT 648
||||| ||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 595 TACTTATTCTCATACAAGAAAGGAGATGATTCGTGGTGGAACTGGAATAACCATTTGAGT 654
Query 649 ATGGAAAGCTTGAATTTAAGTTTTTTGGATTTGGCTTACAGAAACAGCAAGCTTTATATC 708
||||||||| | ||||| ||||||||||| |||||||| |||||||||||||||||| ||
Sbjct 655 ATGGAAAGCCTAAATTTCAGTTTTTTGGACTTGGCTTATAGAAACAGCAAGCTTTATCTC 714
Query 709 TACATTACTAA-GAGTCACATCAAAGTTGTTGATTTCTCTGGAAATGATCCCATAGAAGT 767
|| | ||||| | ||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 715 TATACCACTAATG-GTCACATCAAAATTGTTGATTTCTCTGGAAATGATCCCATAGAAGT 773
Query 768 AATC-GATAAAAACCCGTATTGGGAACATCCGTTTCGATACTTAACCAAAAAAGGGGAAT 826
|||| || |||||||| |||||||||||||||||||||||||| | |||||||||||||
Sbjct 774 AATCGGA-AAAAACCCATATTGGGAACATCCGTTTCGATACTTTTCAAAAAAAGGGGAAT 832
Query 827 AC-ATTAATAAGAGGAGAATAG-CGATTCAGAAATCAGGAGACGTTTTGATTATCTTGAG 884
|| ||| || | || ||||| | |||||||||||||||||||||||||||||||||||
Sbjct 833 ACAATT-GCAAAAAGAAAATAGTC-ATTCAGAAATCAGGAGACGTTTTGATTATCTTGAG 890
Query 885 TGTATTAGCACA-AAGATCAAAAGAGAAAGTTTTATTTTACATCTTTAAGATGAATCTTG 943
|| ||||| | ||||| || || ||| |||| |||||||||||||||||||| | ||
Sbjct 891 TGCATTAG-TGATGAGATCGAAGGACAAAATTTTGTTTTACATCTTTAAGATGAACCCTG 949
Query 944 CGAGTAAAATATGGGAAAGAGTAGAATCTATTGGAGATGATGAGATGTTGATCTTTGGTC 1003
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 950 AGAGTAACATATGGGAAAGAGTAGAATCTATTGGAGATGATGAGATGTTGATCTTTGGTC 1009
Query 1004 ATGGGGTTACGATAAGAGCACCGGTTCA--A-G---ATGTTGGTGATG--G-AATCAAGA 1054
|||||||||| ||||||||||| ||||| | | |||||||||||| | ||||||||
Sbjct 1010 ATGGGGTTACAATAAGAGCACCCGTTCACGATGTTGATGTTGGTGATGATGGAATCAAGA 1069
Query 1055 GTGGTTCAATATGTTTCG-TC-AG-TGACGTATGGCCACCATATTATTCTCCTGCTGCTA 1111
|||||||||| | ||||| | || |||| || |||| |||| ||| || ||||| |
Sbjct 1070 GTGGTTCAATCTATTTCGCTGTAGATGACTTACAGCCA--ATAT-ATTATCATGCTGTTT 1126
Query 1112 CAAATTGGGGTGTCTTCGATCTTGCAACAAGTATAATCAAATGGTCTAAGAAAGACAGTT 1171
||||||| |||||||| ||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 1127 CAAATTGCGGTGTCTTTGATCTTGCAACAAGTATAATCAAATGGCCTAAGGAAGACAGTT 1186
Query 1172 TTAATAATAGATATGTTCAAACTTATTTGTTTTTTCCAGGATTTGCTTAG 1221
|||||||||||| |||| ||||| | | |||| |||||||||||||||||
Sbjct 1187 TTAATAATAGATTTGTTAAAACTCAGTGGTTTGTTCCAGGATTTGCTTAG 1236
> Ahg940704 jgi|Araly1|940704|scaffold_601248.1
Length=1186
Score = 743 bits (402), Expect = 0.0
Identities = 919/1155 (80%), Gaps = 89/1155 (8%)
Strand=Plus/Plus
Query 43 AAAGTGTTTGTAAATCACGATTGGTCCAAACTTTGTCCCGATATCTTACGGT-CGATCCT 101
||| ||| || |||||| ||||||||||| | |||| ||||| | |||| || |||| |
Sbjct 20 AAA-TGTCTGAAAATCAAGATTGGTCCAATCATTGTGCCGATCTTTTAC-GTCCGATAAT 77
Query 102 CGAAAGCTTGAGCTCTACTGATTTTCACCGAGCAAAAACTGTTTGCTCAGATTGGTATTC 161
||||||||||||| ||| ||||| |||||||||||||| ||||||||||||||||| ||
Sbjct 78 CGAAAGCTTGAGCACTATTGATTATCACCGAGCAAAAAAAGTTTGCTCAGATTGGTACTC 137
Query 162 AAATTGGAAAACATGCGTGAA---GCCTCTTTGTCCATGGCGGA-TCATGTA-CGTAAAA 216
|||||||||||||||||| |||||| | |||||||| | |||| || | | |
Sbjct 138 CGTTTGGAAAACATGCGTGAAGCGGCCTCTGTATCCATGGC-AATTCATATACCAT-GAT 195
Query 217 GATTCATT-GATG-TTGTTCAAACCCGGAGAAGACAAGATTTACAA-AGGAACAAACGTT 273
||||| || || | |||||| | |||||||| |||||||||||||| | ||| | ||||
Sbjct 196 GATTC-TTCGA-GTTTGTTCGATCCCGGAGAGGACAAGATTTACAACACGAA-ACTCGTT 252
Query 274 GGACTCTCCAACGACAGCTATTATATGGCTAGCTCCGGAAACTGGCTCTTGATGGTAGAT 333
||| ||||| || | ||||| ||||||||||||| |||||| || || ||||||||||||
Sbjct 253 GGAATCTCCGACAAAAGCTACTATATGGCTAGCTTCGGAAATTGCCTATTGATGGTAGAT 312
Query 334 TCTCATCTCGGTTTCTACATTTTTAACCTGTTAACGAGCAAAAGAATTGATCTTCCATCA 393
|||| |||| |||||| || ||||| |||||||| || ||||||| |||||||||||
Sbjct 313 TCTCTTCTCCATTTCTATATCGTTAACATGTTAACGTGCGAAAGAATCAATCTTCCATCA 372
Query 394 ATGGAGTCTTCAATTCGCGGTGGAAAAGTGAGATTCGAGCAAAACCACGAGCATGGAT-T 452
|||||| | ||||| |||||||| | |||||||| | |||| | ||| || |
Sbjct 373 ATGGAGACGTCAATACGCGGTGGGCACGTGAGATT----C-AAACGA--AGC--GG-TGA 422
Query 453 CAACTGGGGACACTTTGTCGAAC-CTTCTCGTAAGGTTAC-CGTGTCAAAAATA-ACCAT 509
| | ||||| |||| || | || || |||||||| | | ||||| ||| | | | |
Sbjct 423 CGAGTGGGGTTACTTCGTTG-ACTTTTATCGTAAGGAT-CGAGTGTC-TAAAGACATCTT 479
Query 510 CACACGGGAAAGTA-GAGCTGTTCTGTGGATAGACGAGAGAACAGGAGATT-TTGTGGTT 567
| | ||||| | |||||||||||||||| |||| ||||||||||||| || | |||
Sbjct 480 TGGAAGCGAAAG-ATCAGCTGTTCTGTGGATAAACGAAAGAACAGGAGATTATT-TCGTT 537
Query 568 GCTTGGATTTTTAACT-ATCGTT-ACTTGTTCTCATACAAGAAAGGAGATGATTCGTGGT 625
||||||||||| || | | | || | |||||| || |||||||||||||||||| ||||
Sbjct 538 GCTTGGATTTTCAA-TAAGC-TTGAGTTGTTCACACACAAGAAAGGAGATGATTATTGGT 595
Query 626 GGAACTGGAATAACCATTGGAATATGGAAAGCTTGAATTTAAGTTTTTTGGATTTGGCTT 685
|||| ||| || | | || | || || ||||| |||| |||||||||||||
Sbjct 596 GGAATTGGTAT-A-C-----AAGA-GG--TGC--AAATTTGGGTTTCTTGGATTTGGCTT 643
Query 686 A-CAGAAACAGCAAGCTTTATATCTACATTACT-AAGAGTCACATCAAAG-TTGTTGATT 742
| || ||||||||||||||| | || ||| || | || ||||||| ||| |||| ||||
Sbjct 644 ATAAG-AACAGCAAGCTTTATCTGTATATTTCTGATGA-TCACATC-AAGATTGTCGATT 700
Query 743 TCTCTGGA-AATGATCCCATAGAAGTAA-TCGATAAAAACCCGTATTGGGAACATCCGTT 800
|||||||| | || |||| ||||| || |||| ||||||||||||||||| ||||||||
Sbjct 701 TCTCTGGAGATTG-CCCCAAAGAAG-AAGTCGAGAAAAACCCGTATTGGGATCATCCGTT 758
Query 801 TCGA-TAC-TTAACCAAAAAAG-GGGAATACATTAATAAGAGGAGAATAGCGATTCAGAA 857
| || ||| || ||||| || |||| ||| || |||| |||||||| |||||||||
Sbjct 759 T-GATTACGTT--TCAAAACAGTGGGAGTACGTTTGGAAGACGAGAATAGTGATTCAGAA 815
Query 858 ATCAGGAGACGTTTTGATTATCTTGAGTGTATTAGCACAAAG--ATCAAAAGAGAAAGTT 915
| ||||||| ||||| || ||||||||| |||||| | |||| || |||||||| | |
Sbjct 816 AACAGGAGAGGTTTTCATCATCTTGAGTTTATTAG-A-AAAGCTATTAAAAGAGACACAT 873
Query 916 TTATTTTACATCTTTAAGATGAATCTTGCGAGTAA-AATATGGGAAAGAGTAGAATCTAT 974
|| ||||||||||||||||||||| ||| |||||| || ||||||||||||||| |||||
Sbjct 874 TTGTTTTACATCTTTAAGATGAATTTTGAGAGTAACAA-ATGGGAAAGAGTAGATTCTAT 932
Query 975 TGGAGATGATGAGATGTTGATCTTTGGTCATGGGGTTACGA-TAAGAGCACCGGTTCAAG 1033
||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct 933 TGGAGATGATGAGATGTTGATCTTTGGTCATGGGGTTAC-ACTAAGAGCACCGGTTCAAG 991
Query 1034 ATGTTGGTGATGGAATCAAGAGTGGTTCAATATGTTTCGTC-A-G-TGACGTAT---GGC 1087
| ||||||||||||||||||||||||||||| |||||||| | | |||| | | |||
Sbjct 992 AAGTTGGTGATGGAATCAAGAGTGGTTCAATCTGTTTCGTTGAAGATGACCTTTTTTGGC 1051
Query 1088 CACCATATTATTCTCCTGCTGCTACAAATTGGGGTGTCTTCGATCTTGCAACAAGTATAA 1147
| |||||| ||| | || | | ||||| ||||||||||| ||||| ||||||| ||
Sbjct 1052 TAA-ATATTAGTCTTC--CT--T-CGAATTGTGGTGTCTTCGAACTTGCCACAAGTAGAA 1105
Query 1148 TCAAATGGTCTAAGA 1162
||||||||| |||||
Sbjct 1106 TCAAATGGTTTAAGA 1120
> Ahg896331 jgi|Araly1|896331|Al_scaffold_0005_297
Length=1398
Score = 466 bits (252), Expect = 2e-130
Identities = 669/859 (78%), Gaps = 73/859 (8%)
Strand=Plus/Plus
Query 61 GATTGGTCCAAACTTTGTCCCGATATCTTACGGTCGATCCTCGAAAGCTTGAGCTCTACT 120
||||||||||| |||||||| || | || || ||| |||||||||||| ||||| |
Sbjct 52 GATTGGTCCAAGCTTTGTCCTGACCTTTTGCGAAAGATTATCGAAAGCTTGAACTCTATT 111
Query 121 GATTTTCACCGAGCAAAAACT-GTTTGCTCAGATTGGTATTCAAATTGGAAAACATGCGT 179
|| | |||||||| |||||| |||||||||||||||||||| |||||||||||||||
Sbjct 112 GACTACCACCGAGC-AAAACTCGTTTGCTCAGATTGGTATTCGGTTTGGAAAACATGCGT 170
Query 180 GAA---GCCTCTTTGTCCATGGCGGATCATGTACGTA--A--AAGATTCATT-GATG-TT 230
||| |||||| | ||||||||||||||| ||| || | | ||||| || || | ||
Sbjct 171 GAAGCGGCCTCTGTATCCATGGCGGATCATATAC-TATGATGATGATTC-TTCGA-GTTT 227
Query 231 GTTCAAACCCGGAGAAGACAAGATTTAC-AAAGGAACAA-ACGTTGGACTCTCCAACGAC 288
|||| | ||| ||||| ||||| ||||| ||| || || | | ||||| || || |
Sbjct 228 GTTCGATCCCAGAGAAAACAAGTTTTACGAAA-CAA-AACTCCTCGGACTTTCTGACAAT 285
Query 289 AGCTATTATATGGCTAGCTCCGGAAACTGGCTCTTGATGGTAGATTCTCATCTCGGTTTC 348
|||||||||||||||||||||||||||||||||||||||||| |||||| ||||| ||||
Sbjct 286 AGCTATTATATGGCTAGCTCCGGAAACTGGCTCTTGATGGTACATTCTCGTCTCGATTTC 345
Query 349 TACATTTTTAACCTGTTAACGAGC-AAAAGAATTGATCTTCCATCAATGGAGTCTTCAAT 407
|| |||||||||||||||||| || |||||| | ||||||| ||||||||||| |||||
Sbjct 346 TATATTTTTAACCTGTTAACGTGCGAAAAGA-TCAATCTTCCCTCAATGGAGTCGTCAAT 404
Query 408 TCGCGGTGGAAAAGTGAGATTCGAGCAAAAC--C-AC-G-AG-CATGGATTCAACTGGGG 461
||||||||||||||| |||||||||| || | | || | || || || ||| |||||
Sbjct 405 TCGCGGTGGAAAAGTAAGATTCGAGCCAAGCAGCGACTGTAGACAAGG---CAAGTGGGG 461
Query 462 ACACTTTGTCGAACCTTCTCGTAAGGTTACCGTGTCAAAAATAACCATCACACGGG-A-A 519
|||||| ||||| | || | ||||| | ||||||| ||| | | ||| ||| | |
Sbjct 462 ACACTTGGTCGATCATTTTTGTAAGACTCCCGTGTCGAAAG-A-C-ATCTTG-GGGTACA 517
Query 520 AGTAGAGC--T-GTTCTGTGGATAGACGAGAGAACAGGAGATT-TTGTGGTTGCTTGGAT 575
| ||| | | ||||| |||||| ||||||| |||| |||| || | |||||||||||
Sbjct 518 AA-AGATCAGTTGTTCTTTGGATAAACGAGAGGGCAGGGGATTATT-TCGTTGCTTGGAT 575
Query 576 TTTTAACTATCGTTACT-TGTTCTCATACAAGAAAGGAGATGATTCGTGGTGGAACTGGA 634
||| || | | || | ||||| || ||||||||||||||||||| |||||||||||||
Sbjct 576 TTTCAAGAACCAATA-TATGTTCACACACAAGAAAGGAGATGATTCTTGGTGGAACTGGA 634
Query 635 ATAACCATTGGAATATGGAAAGCTTGAATTTAAGTTTTTTGGATTTGGCTTACA-GAAAC 693
|||| ||||| ||| | | ||| |||| |||||||||||| | | | |
Sbjct 635 ATAATAATTGGGATA-------C--G--TTTC--TTTT--GGATTTGGCTTATAAGCA-C 678
Query 694 AGCAAGCTTTATATCTACA-TTACTAAGAGTCACATCAA-AGTTGTTGATTTCTCTGGAA 751
| |||||||||| | || | |||| | || || |||||| | || ||||||||||||||
Sbjct 679 AACAAGCTTTATCTGTATACTTACCACGATTC-CATCAAGA-TTATTGATTTCTCTGGAG 736
Query 752 ATGATCCCATA--GAAGTAATCGATAAAAA-CCCGTATTGGGAACATCCGTTTCGA-TAC 807
|| |||| || |||| ||| | ||||| |||||||||||| |||||||||| | |||
Sbjct 737 AT--TCCCCTAAAGAAGAAATAAAAAAAAAACCCGTATTGGGATCATCCGTTTC-ACTAC 793
Query 808 TTA-ACCAAAAAAGGGGAATACATTAATAAGAGGAGAATAGCGATTCAGAAATCAGGAGA 866
| | |||||||||| ||| |||||||||||||| |||||||||||||||||
Sbjct 794 C-ACATTTCGCAAGGGGAATATATTTGGAAGAGGAGAATAGCCATTCAGAAATCAGGAGA 852
Query 867 CGTTTTGATTATCTTGAGT 885
|||||| | |||||||||
Sbjct 853 GGTTTTGGTCATCTTGAGT 871
Score = 104 bits (56), Expect = 2e-21
Identities = 106/128 (83%), Gaps = 12/128 (9%)
Strand=Plus/Plus
Query 1017 AAGAGCACCGGTTCAAGATGTTGGTGATGGAATCAAGAGTGGTTCAATATGTTTCGTCA- 1075
||| |||||||||||||||||||||||||||||||||| ||||||||| |||||||| |
Sbjct 882 AAGGGCACCGGTTCAAGATGTTGGTGATGGAATCAAGACTGGTTCAATCTGTTTCGTTAA 941
Query 1076 -G-TGACGTATGGCCACCATATTATTCTCCTGCTGCTACAAATTGGGGTGTCTTCGATCT 1133
| |||||| | |||| |||||| | || | | ||||||| ||||||||||||||
Sbjct 942 AGATGACGTTTCGCCA---TATTATA-TG-TG-T--T-CAAATTGCGGTGTCTTCGATCT 992
Query 1134 TGCAACAA 1141
||| ||||
Sbjct 993 TGCCACAA 1000
> Ahg936150 jgi|Araly1|936150|scaffold_500341.1
Length=1187
Score = 459 bits (248), Expect = 3e-128
Identities = 571/719 (79%), Gaps = 54/719 (8%)
Strand=Plus/Plus
Query 383 ATCTTCCATCAATGGAGTCTTCAATTCGCGGTGGAAAAGTGA-GATTCGAGCAAAACCAC 441
|||| |||||||| |||||| ||||||| |||| | |||| | |||| |||| || |
Sbjct 334 ATCTACCATCAATAGAGTCTCCAATTCGTGGTGCACAAGT-ACGATTTGAGCGAAGCGGT 392
Query 442 GAG-CATGGATTCAAC-TGGGGACACTTTGTCGAACCTTCTCGTAAGGTTACCGTGTCAA 499
||| || ||| | || ||||||||||||||||| |||| |||||||| || |||||
Sbjct 393 GAGTCA-AGATAC-ACGTGGGGACACTTTGTCGAGCCTTGTCGTAAGGATAATGTGTC-G 449
Query 500 AAATAACCATC--ACAC-GGGAAAG-T-A-GAGCTGTTCTGTGGATAGACGAGAGAACAG 553
||| | |||| ||| | |||| | | ||| ||||||||||||| ||||||||||||
Sbjct 450 AAA-GA-CATCTTGCACTGCAAAAGATCAGGAGTTGTTCTGTGGATAAACGAGAGAACAG 507
Query 554 GAGATTTTGTGGTTGCTTGGATTTT-TAACTATCGTTACTTGTTCTCATACAAGAAAGGA 612
| |||| ||| |||||||||||||| ||| | |||||||||| ||||||||||||||
Sbjct 508 GGGATTATGTCGTTGCTTGGATTTTGAAAC-GGCATTACTTGTTCACATACAAGAAAGGA 566
Query 613 GATGATTCGTGGTGGAACTGGAATAACCATTGGAATA-TGGAAAGC-TTGAATTTAAGTT 670
||||||||||||||||| |||||||| |||||| || || || ||||| |||
Sbjct 567 GATGATTCGTGGTGGAATTGGAATAAGGATTGGATTACCGG--TGCGAAAAATTTGGGTT 624
Query 671 TTTTGGATTTGGCTTA-CAGAAACAGCAAGCTTTATATCTACATTACTAAGAGTCACATC 729
||||||| ||||||| || ||||| ||||||||| |||||| || | | ||||||
Sbjct 625 ATTTGGATGTGGCTTATAAG-AACAGTAAGCTTTATCTCTACACCACCGATAACCACATC 683
Query 730 AAAG-TTGTTGATTTCTCTGGAAATGATCCCAT-A-GAAGTAATCGATAAA-AACCCGTA 785
||| || | |||||||||||| || |||| | | |||| |||||| ||| ||||||||
Sbjct 684 -AAGATTATCGATTTCTCTGGAGAT-TTCCC-TAAGGAAGAAATCGA-AAATAACCCGTA 739
Query 786 T-TGGGAACATCCGTTTCGATACT-T-AACC-AAAAAAGGGGAA--TACATTAATAAGAG 839
| | ||| ||||| ||| | ||| | || | | ||| ||| || |||||
Sbjct 740 TCT-GGATCATCC-TTT-TA-ACTATGCTCCGCGTGGATGTGAAGTTAC-TT-CGAAGAG 793
Query 840 GAGAATAGCGATTCAGAAATCAGGAGACGTTTTGATTATCTTGAGTGTATTAGCAC-AA- 897
||||||||| ||||||||||||||||| |||||||| ||||||| | |||| || ||
Sbjct 794 GAGAATAGCCATTCAGAAATCAGGAGAGGTTTTGATCATCTTGA--AT-TTAGTACTAAT 850
Query 898 AGATCAAAAGAGAAAGTTTTATTTTACATCTTTAAGATGAATCTTGCGAGT-AAAATATG 956
| | |||| ||| |||| ||||||||||||||||||||||||| |||| || |||
Sbjct 851 TGGT-GAAAG-CAAACTTTTGTTTTACATCTTTAAGATGAATCTTGAGAGTGGCAA-ATG 907
Query 957 GGAAAGAGTAG-AATCTATTGGAGATGATGAGATGTTGATCTTTGGTCATGGGGTTACGA 1015
||||||||| | |||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 908 GGAAAGAGT-GCAATCTATTGGAGATGATGAGATGTTGATCTTTGGTCATGGGGTTACAA 966
Query 1016 TAAGAGCACCGGTTCAAGATGTTGGTGATGGAATCAAGAGTGGTTCAATATGTTTCGTC 1074
|||||||||||||||||||||||||||| ||||||||||||||||| || | |||||||
Sbjct 967 TAAGAGCACCGGTTCAAGATGTTGGTGACGGAATCAAGAGTGGTTCTATCTTTTTCGTC 1025
> Ahg936152 jgi|Araly1|936152|scaffold_500343.1
Length=1216
Score = 412 bits (223), Expect = 2e-114
Identities = 466/576 (81%), Gaps = 45/576 (8%)
Strand=Plus/Plus
Query 525 AGCTGTTCTGTGGATAGACGAG-AGAACAGGAGATTTTGTGGTTGCTTGGATTTTT-AAC 582
|||||||||||||||| ||||| || || || |||| ||||||||||||||||||| |||
Sbjct 617 AGCTGTTCTGTGGATAAACGAGAAG-ACGGGTGATTATGTGGTTGCTTGGATTTTTAAAC 675
Query 583 TATCGTTACTTGTTCTCATACAAGAAAGGAGATGATTCGTGGTGGAACTGGAATAACCAT 642
| | |||||||||| ||||||||||||||||||| || ||||||||||||||||| |
Sbjct 676 -AGCATTACTTGTTCACATACAAGAAAGGAGATGAATCATGGTGGAACTGGAATAATAAC 734
Query 643 TGG-AATAT-GG--AA--A-GCTTGAATTTAAGTTTTTTGGATTTGGCTTACAG-AAACA 694
||| ||| | || || | || | ||||| ||| ||||||||||||||| | |||||
Sbjct 735 TGGAAAT-TCGGTCAAGGACGCGTAAATTTGGGTTATTTGGATTTGGCTTA-TGAAAACA 792
Query 695 GCAAGCTTTATATCTACATTA-CTAAGAGTCACATCAAAG-TTGTTGATTTCTCTGGAAA 752
||||||||||| |||| | || | | | |||||||| ||| || | ||||||||||| |
Sbjct 793 GCAAGCTTTATCTCTATACTACCGATG-GTCACATC-AAGATTATCAATTTCTCTGGAGA 850
Query 753 TGATCCCAT-A-GAAGTAATCGATAAA-AACCCGTAT-TGGGAACATCCGTTTCGATACT 808
| |||| | | |||| |||||| ||| ||||||||| | ||| ||||| ||| | |||
Sbjct 851 T-TTCCC-TAAGGAAGAAATCGA-AAATAACCCGTATCT-GGATCATCC-TTT-TA-ACT 903
Query 809 -T-AACC-AAAAAAGGGGAA-TACATTAATAAGAGGAGAATAGCGATTCAGAAATCAGGA 864
| || | | |||| | ||| | |||||||||||| |||||||||||||||
Sbjct 904 ATGCTCCGCATGGATTGGAACT-TATTTCGAGGAGGAGAATAGCCATTCAGAAATCAGGA 962
Query 865 GACGTTTTGATTATCTTGAGTGTATT---AGCAC-AA-AGATCAAAAGAGAAAGTTTTAT 919
|| |||||||| ||| ||||| |||| || || || ||| |||||| | |||| |
Sbjct 963 GAGGTTTTGATCATCGTGAGTTTATTAGAAGTACGAATTGAT-GAAAGAG-CACTTTTGT 1020
Query 920 TTTACATCTTTAAGATGAATCTTGCGAGT-AAAATATGGGAAAGAGTAG-AATCTATTGG 977
|||||||||||||||||||||||| |||| || ||||||||||| || | ||||||||
Sbjct 1021 TTTACATCTTTAAGATGAATCTTGAGAGTGGCAA-ATGGGAAAGAG-AGCATTCTATTGG 1078
Query 978 AGATGATGAGATGTTGATCTTTGGTCATGGGGTTACGATAAGAGCACCGGTTCAAGATGT 1037
||||||||||||| | || ||||||||||||||||| |||||||||||||||||||||||
Sbjct 1079 AGATGATGAGATGATAATATTTGGTCATGGGGTTACAATAAGAGCACCGGTTCAAGATGT 1138
Query 1038 TGGTGATGGAATCAAGAGTGGTTCAATATGTTTCGT 1073
||||||||||||||||| ||||||||| ||||||||
Sbjct 1139 TGGTGATGGAATCAAGACTGGTTCAATCTGTTTCGT 1174
> Ahg896329 jgi|Araly1|896329|Al_scaffold_0005_295
Length=852
Score = 198 bits (107), Expect = 7e-50
Identities = 282/362 (78%), Gaps = 30/362 (8%)
Strand=Plus/Plus
Query 238 CCCGGAG-AAGACAAGATTTACAAAGGAACAAA--C-GTT-GGACTCTCCAACGACAGCT 292
||| ||| |||| |||||||||||| || ||| | || |||||||| || | |||
Sbjct 78 CCCAGAGAAAGA-AAGATTTACAAA--AA-AAAGCCTCTTCGGACTCTCTGACAATAGCC 133
Query 293 ATTATATGGCTAGCTCCGGAAACTGGCTCTTGATGGTAGATTCTCATC-TCGGTTTCTAC 351
||||| |||||||||| ||||| ||| ||||||||||| ||||| || | | ||||||
Sbjct 134 ATTATGTGGCTAGCTCAGGAAATTGGTTCTTGATGGTATATTCTTGTCAT-GATTTCTAT 192
Query 352 ATTTTTAACCTGTTAACGA-GC-AAAAGAATTGATCTTCCATCAATGGAGTCTTCAATTC 409
||||||||||| || || | || ||||||| | ||||||||||||| ||| ||| ||||
Sbjct 193 ATTTTTAACCTATTCAC-AGGCAAAAAGAACAG-TCTTCCATCAATGAAGTATTCCATTC 250
Query 410 GCGGTGGAAAAGTGAGATTCGAGCAAAACCACGAGC-ATGGA-T-T-CAACTGGGGACAC 465
|||||||||||||||||||||||| || | || | || || | | ||| |||||||||
Sbjct 251 GCGGTGGAAAAGTGAGATTCGAGCCAAGCGGTGA-CTATAGACTCTACAATTGGGGACAC 309
Query 466 TTTGTCGAACCTTCTCGTAAGG-TT-ACCGTGTCAAAA-ATAACCATCACACGGGAAAG- 521
|| ||||| | || ||||| || || || ||||| ||| | | || || | | ||||
Sbjct 310 TTCGTCGATCATTTTCGTA-GGATTTAC-GTGTCGAAAGACA-CCTTCGGATGCAAAAGA 366
Query 522 TAGAGCTGTTCTGTGGATAGACGAGAGAACAGGAGATT-TTGTGGTTGCTTGGATTTTTA 580
| ||||||||| ||||||||||| || ||||| |||| || | ||||| |||||||| |
Sbjct 367 TC-AGCTGTTCTTTGGATAGACGAAAGGACAGGGGATTATT-TCGTTGCATGGATTTTGA 424
Query 581 AC 582
||
Sbjct 425 AC 426
Score = 67.6 bits (36), Expect = 2e-10
Identities = 36/36 (100%), Gaps = 0/36 (0%)
Strand=Plus/Plus
Query 603 CAAGAAAGGAGATGATTCGTGGTGGAACTGGAATAA 638
||||||||||||||||||||||||||||||||||||
Sbjct 477 CAAGAAAGGAGATGATTCGTGGTGGAACTGGAATAA 512
> Ahg480113 jgi|Araly1|480113|fgenesh2_kg.3__2814__AT2G04840.1
Length=1197
Score = 182 bits (98), Expect = 7e-45
Identities = 416/561 (74%), Gaps = 55/561 (10%)
Strand=Plus/Plus
Query 525 AGCTGTTCTGTGGATAGACGAGAGAACAGGAGATTTTGTGGTTGCTTGGATTTTTA-ACT 583
||||||||| |||||| |||||| |||||| |||| ||| |||||||||| || | ||
Sbjct 504 AGCTGTTCTATGGATAAACGAGACAACAGGGGATTATGTCGTTGCTTGGACATTCATAC- 562
Query 584 ATCGTTACTTGTTCTCATACAAGAAAGGAGATGATTCGTGGTGGAA-CTGGAATAACCAT 642
| | |||||||||||||||||||||||||||| ||| ||||| || || ||| || ||
Sbjct 563 AGCATTACTTGTTCTCATACAAGAAAGGAGATTCTTCTTGGTGTAATCTA-AATCACAAT 621
Query 643 TGGAATATGGAAAGCTTGAATTTAAGTTTTTTGGATTTGGCTTAC-AGAAACAGCAAGCT 701
|||| | || ||| ||| |||| | || |||||| |||| || |||||
Sbjct 622 GGGAAAA-GG-----TTGG-TTTC-GTTT---G-ATATGGCTTGTGAGAA-CAATAAGCT 668
Query 702 TTATATCTACATTA-CTAAG-AGTCACATCAAAG-TTGTTGATTTCTCTGGAAATGATCC 758
|||| | ||| | |||| | |||||| || | || |||||||||||||| | |||
Sbjct 669 TTATCTTTACGC-AGCTAATCA-TCACAT-AAGGATTTTTGATTTCTCTGGAGTTTTTCC 725
Query 759 CATAGAA--GTAATC-GATAAAAACCCGTATTGGGAACATCCGTTT--CGATACTTAACC 813
||||||| | || | || ||| |||||||| | || |||||||| || || |
Sbjct 726 CATAGAAAAGAAAACCGA-AAA--CCCGTATTCGAAATATCCGTTTAACGCGG-TTGAGG 781
Query 814 AAAAAAGGGGAATACATTAATAAGAGGAGAATAGCGATTCAGAAATCA---GGAGACGTT 870
|| | | ||||| || ||||||| ||||||||||||||||||| || || |||
Sbjct 782 AACCGTGCG-AATACGTTTGGAAGAGGAAAATAGCGATTCAGAAATCATCAGGTGAGGTT 840
Query 871 TTGATTATCTTGAGTGTATTAGCACAAA-GATC----AA-AAGAGAAAGTTTTATTTTAC 924
||||| |||||||| | | | |||| | | || |||||||| |||| ||||||
Sbjct 841 TTGATCATCTTGAGCCT-TAA--ACAAGTGTTTTGTGAAGAAGAGAAACTTTTGTTTTAC 897
Query 925 ATCTTTAAGATGAATCTTGCGAGTAA-AATATGGGAAAGAGTAGAATCTATTGGAGATGA 983
||||||||||||||||||| |||| || ||||||||||| | ||||||||||||||
Sbjct 898 ATCTTTAAGATGAATCTTGAGAGTTGCAAG-TGGGAAAGAGTTTATTCTATTGGAGATGA 956
Query 984 TGAGATGTTGATCTTTGGTCATGGGGTTACGATAAGAGCACCGGT-TCAA-GATGTTGGT 1041
|| ||||| | |||||||| || ||||| ||| | || | | | || ||| |||||
Sbjct 957 -GA--TGTTGGTTTTTGGTCAAGGTGTTACAATA-GCT-ACTGCTCTTAAAGATCTTGGT 1011
Query 1042 GATGGAATCAAGAGTGGTTCA 1062
||||||||||||||| ||||
Sbjct 1012 CATGGAATCAAGAGTGATTCA 1032
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45595008732
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5