BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G38280.1
Length=2316
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494154 jgi|Araly1|494154|fgenesh2_kg.7__3587__AT5G38280.1 2056 0.0
Ahg891944 jgi|Araly1|891944|Al_scaffold_0007_3930 1232 0.0
Ahg476148 jgi|Araly1|476148|fgenesh2_kg.2__1278__AT1G70250.1 723 0.0
Ahg948042 jgi|Araly1|948042|scaffold_704271.1 669 0.0
> Ahg494154 jgi|Araly1|494154|fgenesh2_kg.7__3587__AT5G38280.1
Length=2268
Score = 2056 bits (1113), Expect = 0.0
Identities = 1328/1432 (93%), Gaps = 13/1432 (1%)
Strand=Plus/Plus
Query 864 CAACGACATAAGTTCAATGTCTCAACCATCCAAGGAAACTAATGGAGGAACGAAACAAAA 923
|||||||||||| ||| ||||||||||||||||||||||||||||||||| ||||||||
Sbjct 842 CAACGACATAAGCTCAGCGTCTCAACCATCCAAGGAAACTAATGGAGGAACAAAACAAAA 901
Query 924 GTCATCATGGAAGTTAAAACTCATAGTTGGAGTCTCAGCAGCTTTGACCCTGATGATCTT 983
|||||||||||||||||||||||| ||||||||||||||||||| ||| |||||||| |
Sbjct 902 ATCATCATGGAAGTTAAAACTCATACTTGGAGTCTCAGCAGCTTTAACCATGATGATCAT 961
Query 984 AATTGTGGTCGTAATAATAGTGAGAACAAAGAATATGAGAAATAGTGAGTGGAATGATCA 1043
|||||||||| ||||||| ||||||||||||||| ||||||||||||| |||||||||||
Sbjct 962 AATTGTGGTCTTAATAATTGTGAGAACAAAGAATGTGAGAAATAGTGATTGGAATGATCA 1021
Query 1044 GAACGTTGAAGCAGTTGCAATGTTGAAACGATACAGTTATACAAGAGTCAAGAAGATGAC 1103
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1022 GAACGTTGAAGCAGTTGCAATGTTGAAACGATATAGTTATACAAGAGTCAAGAAGATGAC 1081
Query 1104 AAACTCATTTGCGCATGTTCTCGGTAAAGGAGGATTTGGAACTGTCTACAAAGGAAAGTT 1163
||| ||||||| |||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1082 AAAATCATTTGTGCATGTTCTCGGAAAAGGAGGATTTGGAACTGTCTACAAAGGAAAGTT 1141
Query 1164 AGCCGATAGCGGTCGGGATGTCGCAGTTAAGATCTTGAAGGTGTCAGAGGGTAATGGAGA 1223
| ||||||||||||||||||| ||||| ||||||||||||| | ||||||| ||||| ||
Sbjct 1142 ACCCGATAGCGGTCGGGATGTTGCAGTGAAGATCTTGAAGGAGACAGAGGGGAATGGGGA 1201
Query 1224 AGAGTTCATTAATGAAGTAGCAAGCATGAGTAGAACATCTCATGTCAATATTGTTTCTCT 1283
|||||| || ||||||||||| ||||||||||||||||||||||||||||| |||||| |
Sbjct 1202 AGAGTTTATCAATGAAGTAGCTAGCATGAGTAGAACATCTCATGTCAATATCGTTTCTTT 1261
Query 1284 GCTTGGATTCTGTTATGAAAAGAACAAGAGAGCTATAATCTACGAGTTCATGCCGAATGG 1343
|||||||||||||||||||| |||||||||||||||| |||| ||||||||||| |||||
Sbjct 1262 GCTTGGATTCTGTTATGAAAGGAACAAGAGAGCTATAGTCTATGAGTTCATGCCTAATGG 1321
Query 1344 GTCCCTCGACAAGTATATTTCTGCGAATATGTCAACAAAGATGGAATGGGAAAGATTATA 1403
||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||
Sbjct 1322 ATCCCTCGACAAGTATATTTCTGCGAATATGTCAACCAAGTTGGAATGGGAAAGATTATA 1381
Query 1404 CGACGTTGCGGTAGGTATCTCTCGCGGCCTAGAGTATTTACACAATCGGTGTGTCACGAG 1463
||| ||||| ||||||||||| ||||||||||||||||||||||||| |||||||| ||
Sbjct 1382 TGACATTGCGCTAGGTATCTCTGGCGGCCTAGAGTATTTACACAATCGCTGTGTCACAAG 1441
Query 1464 GATTGTCCATTTCGACATAAAGCCGCAGAACATACTGATGGACGAAAATCTTTGTCCTAA 1523
|||||| ||||||||||||||||||||||||||||||||||||| ||||||||| |||||
Sbjct 1442 GATTGTACATTTCGACATAAAGCCGCAGAACATACTGATGGACGGAAATCTTTGCCCTAA 1501
Query 1524 GATTTCAGATTTTGGTCTTGCTAAACTCTGCAAAAATAAGGAGAGCATCATATCAATGCT 1583
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1502 GATTTCAGACTTTGGTCTTGCTAAACTCTGCAAAAATAAGGAGAGCATCATATCAATGCT 1561
Query 1584 ACACATGAGAGGGACCTTTGGATACATTGCCCCTGAAATGTTTTCCAAGAATTTTGGAGC 1643
|||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1562 ACACATGAGAGGAACCTTTGGATACATTGCTCCTGAAATGTTTTCCAAGAATTTTGGAGC 1621
Query 1644 AGTTTCGCATAAGTCAGATGTTTATAGTTATGGGATGGTAGTTCTTGAGATGATTGGAGC 1703
||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||
Sbjct 1622 AGTTTCGCATAAGTCAGATGTTTATAGTTATGGAATGGTACTTCTTGAGATGATTGGAGC 1681
Query 1704 AAAGAATATAGAAAAGGTTGAATATTCTGGATCTAACAATGGTTCAATGTACTTTCCAGA 1763
||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||
Sbjct 1682 AAAGAATATAGAAAAGGTTGAATATTCTGGATCCAACAATAGTTCAATGTACTTTCCAGA 1741
Query 1764 ATGGGTCTATAAAGATTTTGAGAAGGGAGAAATCACAAGGATTTTTGGAGATAGTATAAC 1823
|||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||
Sbjct 1742 TTGGGTCTATAAAGATTTTGAGAGGGGACAAATCACAAGGATTTTTGGAGATAGTATAAC 1801
Query 1824 TGATGAAGAAGAGAAAATTGCAAAGAAATTGGTATTGGTTGCTCTATGGTGTATACAGAT 1883
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1802 TGATGAAGAAGAGAAAATTGCAAAGAAATTGGTATTGGTTGCTCTATGGTGTATTCAGAC 1861
Query 1884 GAATCCATCAGACCGTCCACCAATGATCAAAGTCATTGAGATGTTAGAGGGGAATCTAGA 1943
||||||||| ||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 1862 GAATCCATCTGACCGTCCACCAATGATCAAAGTCATTGAAATGTTAGAGGGAAATCTAGA 1921
Query 1944 GGCTCTTCAAGTACCACCTAATCCTCTCTTGTTTTCACCCGAGGAAACGGTTCCAGACAC 2003
|||||| ||||| |||||||||||||||||||||||||||| ||||||||||||||| |
Sbjct 1922 GGCTCTCCAAGTTCCACCTAATCCTCTCTTGTTTTCACCCGCGGAAACGGTTCCAGAAAT 1981
Query 2004 TCTTGAAGATAGTGATGACACTTCAACCTTCTTTAATCCAAGT-CATTTTGAAAGAGGTA 2062
|||||||||||||||||| |||||||||||||||||||||||| | ||| ||| | | ||
Sbjct 1982 TCTTGAAGATAGTGATGAGACTTCAACCTTCTTTAATCCAAGTTCCTTTGGAA-GTGATA 2040
Query 2063 CTCTCTTAGA-TAGTGAAGATGTTTTACAACATGGGTCAAGGTCCTCCTAAACTAAAGTC 2121
|||||||| | ||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 2041 CTCTCTTA-ACTAGTGAAGATGCTTTACAACATGGGTCAAGGTCCTCCTAAACTAAAGTC 2099
Query 2122 AACCGGAGAGCGGATC-TCTTTA-AACTTGTCATGATCTT-TAGCTAT-TTCTCGATTAG 2177
|| | | ||| | |||| | || || | | || || ||| ||| |||||||||||
Sbjct 2100 AAA-GAATAGCTCAAGATCTTGACAAGTTTTAA-GAG-TTGTAG-TATCTTCTCGATTAG 2155
Query 2178 TTTTTAATAACTTCTGACTTAATAGTGT-GTTTCTATGCTTATTAGATGATGTTTACTGA 2236
||||||| |||||||||||||||||||| | ||||||||||||||||||||||||| |||
Sbjct 2156 TTTTTAAAAACTTCTGACTTAATAGTGTTGATTCTATGCTTATTAGATGATGTTTATTGA 2215
Query 2237 CGCAGGCACTCAATATTGTTGGTTAATGAAGACTATTTTCTGTTGTTTTTCT 2288
||||| |||||| ||||||||||||||||||| |||||| |||| |||||||
Sbjct 2216 CGCAGACACTCACTATTGTTGGTTAATGAAGAATATTTTATGTTCTTTTTCT 2267
Score = 516 bits (279), Expect = 3e-145
Identities = 394/447 (88%), Gaps = 18/447 (4%)
Strand=Plus/Plus
Query 76 ACAAAGGGTAGTCTTATATCTTCAGTCTTCTACAAGCCAATGGTTGA-AGGGTTCTCATT 134
||||||||||||| |||||| | |||||| | ||||||||||| | | ||||| |
Sbjct 1 ACAAAGGGTAGTCATATATC-T---TCTTCTTCGAGCCAATGGTT-ACAAGGTTC-C--- 51
Query 135 GTCATTGATGTTCCTCCTTGTTTCACATTTCTTTGTCTCAGGAGTAATGTCGAGAAACTT 194
|||||||||||||||||||||| ||||| || |||| |||||||||||| ||||||||
Sbjct 52 --CATTGATGTTCCTCCTTGTTTCCCATTTATTCGTCTTAGGAGTAATGTCAAGAAACTT 109
Query 195 TACTATAGAGAACAAATGCGATTACACTGTCTGGCCGGGATTCCTAACCATGACTACTGC 254
|||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||
Sbjct 110 TACTATAGAGAACAAATGCGCTTACACTGTCTGGCCAGGATTCCTAACCATGACTACTGC 169
Query 255 GGTTTCGCTCCCCACCAACGGCTTCTCCCTCAAGAAAGGGGAGTCACGTGTCATCAATGT 314
||||||||| ||||||| |||||||||||| |||||||||||| | ||||||||||||||
Sbjct 170 GGTTTCGCTACCCACCACCGGCTTCTCCCTTAAGAAAGGGGAGACGCGTGTCATCAATGT 229
Query 315 GCCACCGTCATGGTCAGGTCGTTTGTGGGGTAGATCG-TTCTGCTCCACCAGCTCAACAG 373
|||| |||||||||||||||||||||||||||||||| || ||||| |||||||||||||
Sbjct 230 GCCATCGTCATGGTCAGGTCGTTTGTGGGGTAGATCGCTT-TGCTCAACCAGCTCAACAG 288
Query 374 GGAATTTCTCATGTGCCACGGGAGACTGCGGCTCCGGAAAAATCGAGTGCTCCG-ATTCC 432
| ||||||||||||||||| |||||||||||||| |||||||| |||||||| | | |
Sbjct 289 GAAATTTCTCATGTGCCACAGGAGACTGCGGCTCTGGAAAAATTGAGTGCTCTGGAGGC- 347
Query 433 GGAGCAAG-GCCTCCTACGACGCTAATTGATTTTACCCTTGACGCTACCGACGGTCAAGA 491
| |||| | |||||| || |||||||| ||||||||||| |||| | || | ||||||||
Sbjct 348 GCAGCA-GCGCCTCCAACAACGCTAATCGATTTTACCCTCGACGGTTCCAAAGGTCAAGA 406
Query 492 CTTCTACGATGTAAGCGTCGTGGATGG 518
|||||||||||||||||| ||||||||
Sbjct 407 CTTCTACGATGTAAGCGTTGTGGATGG 433
Score = 433 bits (234), Expect = 3e-120
Identities = 286/311 (92%), Gaps = 3/311 (1%)
Strand=Plus/Plus
Query 555 AGGGAGTGGCCGGACATGTAGCAACGTTGGTTGTGTGGTTAACTTGAACAAGACTTGTCC 614
|||||| ||||||||||| |||| ||||||||| ||||| ||| |||||||||| |||||
Sbjct 438 AGGGAGAGGCCGGACATGCAGCAGCGTTGGTTGCGTGGTCAAC-TGAACAAGACGTGTCC 496
Query 615 GTCGGAGCTTAAAGTGATGGGAAGCTCTAACAAGGAACATCCCATTGCTTGCATGAACGC 674
|||||||||||| ||||||||||||||| |||||||||||||||| ||||||||||||||
Sbjct 497 GTCGGAGCTTAAGGTGATGGGAAGCTCTGACAAGGAACATCCCATCGCTTGCATGAACGC 556
Query 675 TTGTCAGAAATTCGGGTTGCCGGAGTTCTGCTGCTACGGTGAGTACGGTAAACCTGCAAA 734
|||| | |||||| |||||||||||||||||||||||||||||||||| | ||||| |||
Sbjct 557 TTGTGAAAAATTCCGGTTGCCGGAGTTCTGCTGCTACGGTGAGTACGGCACACCTGAAAA 616
Query 735 ATGTCAACCGACGCTTTACTCTACGAA--TTTCAAGAACGAGTGTCCACTCGCTTATAGC 792
||| ||||||||||||||||| | ||| |||||||||||| ||||||||||||||||||
Sbjct 617 ATGCCAACCGACGCTTTACTCGAAGAATTTTTCAAGAACGATTGTCCACTCGCTTATAGC 676
Query 793 TATGCTTATGACAATGAAAACAACACCTTCAGATGCTCAAACTCACCTAACTATGTCATC 852
|||||||||||||||||||||| |||| |||||||||||||||||||| |||||||||||
Sbjct 677 TATGCTTATGACAATGAAAACAGCACCGTCAGATGCTCAAACTCACCTGACTATGTCATC 736
Query 853 ACCTTTTGCCC 863
|||||||||||
Sbjct 737 ACCTTTTGCCC 747
> Ahg891944 jgi|Araly1|891944|Al_scaffold_0007_3930
Length=1011
Score = 1232 bits (667), Expect = 0.0
Identities = 845/932 (91%), Gaps = 8/932 (1%)
Strand=Plus/Plus
Query 137 CATTGATGTTCCTCCTTGTTTCACATTTCTTTGTCTCAGGAGTAATGTCGAGAAACTTTA 196
|||||||||||||||||||||| ||||| || |||| |||||||||||| ||||||||||
Sbjct 17 CATTGATGTTCCTCCTTGTTTCCCATTTATTCGTCTTAGGAGTAATGTCAAGAAACTTTA 76
Query 197 CTATAGAGAACAAATGCGATTACACTGTCTGGCCGGGATTCCTAACCATGACTACTGCGG 256
|||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||
Sbjct 77 CTATAGAGAACAAATGCGCTTACACTGTCTGGCCAGGATTCCTAACCATGACTACTGCGG 136
Query 257 TTTCGCTCCCCACCAACGGCTTCTCCCTCAAGAAAGGGGAGTCACGTGTCATCAATGTGC 316
||||||| ||||||| |||||||||||| |||||||||||| | ||||||||||||||||
Sbjct 137 TTTCGCTACCCACCACCGGCTTCTCCCTTAAGAAAGGGGAGACGCGTGTCATCAATGTGC 196
Query 317 CACCGTCATGGTCAGGTCGTTTGTGGGGTAGATCG-TTCTGCTCCACCAGCTCAACAGGG 375
|| |||||||||||||||||||||||||||||||| || ||||| ||||||||||||||
Sbjct 197 CATCGTCATGGTCAGGTCGTTTGTGGGGTAGATCGCTT-TGCTCAACCAGCTCAACAGGA 255
Query 376 AATTTCTCATGTGCCACGGGAGACTGCGGCTCCGGAAAAATCGAGTGCTC-CGATTCCGG 434
||||||||||||||||| |||||||||||||| |||||||| |||||||| || |
Sbjct 256 AATTTCTCATGTGCCACAGGAGACTGCGGCTCTGGAAAAATTGAGTGCTCTGGA-GGCAC 314
Query 435 AGCAAG-GCCTCCTACGACGCTAATTGATTTTACCCTTGACGCTACCGACGGTCAAGACT 493
||| || || ||| || |||||||| ||||||||||| |||| | || | ||||||||||
Sbjct 315 AGC-AGCGCTTCCAACAACGCTAATCGATTTTACCCTCGACGGTTCCAAAGGTCAAGACT 373
Query 494 TCTACGATGTAAGCGTCGTGGATGGTTACAACCTTCCGTTGGTTGTGGTCCCACAACG-T 552
|||||||||||||||| ||||||||||||||||||||||||||||| |||||||| | |
Sbjct 374 TCTACGATGTAAGCGTTGTGGATGGTTACAACCTTCCGTTGGTTGTAGTCCCACAGGGTT 433
Query 553 CTAGGGAGTGGCCGGACATGTAGCAACGTTGGTTGTGTGGTTAACTTGAACAAGACTTGT 612
| |||||| |||||| |||| | || | | ||||| ||||| ||| ||||| |||| |||
Sbjct 434 C-AGGGAGAGGCCGGGCATGCATCAGCATCGGTTGCGTGGTCAACCTGAACGAGACGTGT 492
Query 613 CCGTCGGAGCTTAAAGTGATGGGAAGCTCTAACAAGGAACATCCCATTGCTTGCATGAAC 672
|||||||||||||| ||||||||||||||| |||||||||||||||| ||||||||||||
Sbjct 493 CCGTCGGAGCTTAAGGTGATGGGAAGCTCTGACAAGGAACATCCCATCGCTTGCATGAAC 552
Query 673 GCTTGTCAGAAATTCGGGTTGCCGGAGTTCTGCTGCTACGGTGAGTACGGTAAACCTGCA 732
|||||| | |||||| |||||||||||||||||||||||||||||||||| | ||||| |
Sbjct 553 GCTTGTGAAAAATTCCGGTTGCCGGAGTTCTGCTGCTACGGTGAGTACGGCACACCTGAA 612
Query 733 AAATGTCAACCGACGCTTTACTCTACGAATTTCAAGAACGAGTGTCCACTCGCTTATAGC 792
||||| ||||||||||||||||| | ||||||||||||||| ||||||||||||||||||
Sbjct 613 AAATGCCAACCGACGCTTTACTCGAAGAATTTCAAGAACGATTGTCCACTCGCTTATAGC 672
Query 793 TATGCTTATGACAATGAAAACAACACCTTCAGATGCTCAAACTCACCTAACTATGTCATC 852
|||||||||||||||||||||| ||| |||| ||||||||||||||||||||| ||||||
Sbjct 673 TATGCTTATGACAATGAAAACAGCACATTCACATGCTCAAACTCACCTAACTACGTCATC 732
Query 853 ACCTTTTGCCCCAACGACATAAGTTCAATGTCTCAACCATCCAAGGAAACTAATGGAGGA 912
||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||
Sbjct 733 ACCTTTTGCCCCAACGACATAAGCTCAGCGTCTCAACCATCCAAGGAAACTAATGGAGGA 792
Query 913 ACGAAACAAAAGTCATCATGGAAGTTAAAACTCATAGTTGGAGTCTCAGCAGCTTTGACC 972
|| |||||||| |||||||||||||||||||||||| ||||||||||||||||||| |||
Sbjct 793 ACAAAACAAAAATCATCATGGAAGTTAAAACTCATACTTGGAGTCTCAGCAGCTTTAACC 852
Query 973 CTGATGATCTTAATTGTGGTCGTAATAATAGTGAGAACAAAGAATATGAGAAATAGTGAG 1032
|||||||| ||||||||||| ||||||| |||||| |||||||| |||||||||||||
Sbjct 853 ATGATGATCATAATTGTGGTCTTAATAATTGTGAGAGCAAAGAATGTGAGAAATAGTGAT 912
Query 1033 TGGAATGATCAGAACGTTGAAGCAGTTGCAAT 1064
||||||||||||||||||||||||||||||||
Sbjct 913 TGGAATGATCAGAACGTTGAAGCAGTTGCAAT 944
Score = 84.2 bits (45), Expect = 4e-15
Identities = 58/64 (91%), Gaps = 2/64 (3%)
Strand=Plus/Plus
Query 2050 TTTGAAAGAGGTACTCTCTTAGA-TAGTGAAGATGTTTTACAACATGGGTCAAGGTCCTC 2108
|||| ||| | |||||||||| | ||||||||||| ||||||||||||||||||||||||
Sbjct 949 TTTGGAAGTGATACTCTCTTA-ACTAGTGAAGATGCTTTACAACATGGGTCAAGGTCCTC 1007
Query 2109 CTAA 2112
||||
Sbjct 1008 CTAA 1011
> Ahg476148 jgi|Araly1|476148|fgenesh2_kg.2__1278__AT1G70250.1
Length=2416
Score = 723 bits (391), Expect = 0.0
Identities = 681/820 (83%), Gaps = 24/820 (3%)
Strand=Plus/Plus
Query 929 CATGGAAGTTAAAACTCATAGTTGGAGTCTCAGCAGCTTTGAC-CCTGATGATC-TTAAT 986
||| |||||||||||||||| ||||||| ||| ||| |||| | | |||||| || ||
Sbjct 1269 CATTGAAGTTAAAACTCATACTTGGAGTTTCATCAGTTTTGGCTAC-AATGATCATT-AT 1326
Query 987 TGTGGTCGTAATAATAGTGAGAACAAAGAATATGAGAAATAGTGAGTGGAATGATCAGAA 1046
|||| | || ||| || ||| ||||||||| |||||| ||||| |||||||| ||||
Sbjct 1327 TGTGATTGTGGTAAGCGTTAGAGCAAAGAATACGAGAAAGAGTGATTGGAATGAGAAGAA 1386
Query 1047 CGTTGAAGCAGTTGCAATGTTGAAACGATACAGTTA--TACAAGAGTCAAGAAGATGACA 1104
| | |||||||||| |||| |||| || | |||||| ||| | ||||||||||||||||
Sbjct 1387 CATGGAAGCAGTTGTAATGATGAAGCGTTTCAGTTATGTAC-A-AGTCAAGAAGATGACA 1444
Query 1105 AACTCATTTGCGCATGTTCTCGGTAAAGGAGGATTTGGAACTGTCTACAAAGGAAAGTTA 1164
|||||||||||| ||||||| || ||||| |||||||||||||| || ||||| ||||||
Sbjct 1445 AACTCATTTGCGAATGTTCTTGGGAAAGGGGGATTTGGAACTGTATATAAAGGGAAGTTA 1504
Query 1165 GCCGATAGCGGTCGGGATGTCGCAGTTAAGATCTTGAAGGTGTCAGA-GGGTAATGGAGA 1223
||||| || | || ||||| ||||| ||||||||||||| |||| | ||| | ||| ||
Sbjct 1505 CCCGATGGCAGCCGAGATGTTGCAGTGAAGATCTTGAAGGAGTCAAACGGGGA-TGGGGA 1563
Query 1224 AGAGTTCATTAATGAAGTAGCAAGCATGAGTAGAACATCTCATG-TCAATATTGTTTCTC 1282
||| ||||| |||||| |||| ||||||||||| |||||||||| | ||||| |||||||
Sbjct 1564 AGACTTCATCAATGAAATAGCTAGCATGAGTAGGACATCTCATGCT-AATATAGTTTCTC 1622
Query 1283 TGCTTGGATTCTGTTATGAAAAGA-ACAAGAGAGCTATAATCTACGAGTTCATGCCGAAT 1341
|||||||||||||||||||| || | |||| ||||||||| || |||||||||||||||
Sbjct 1623 TGCTTGGATTCTGTTATGAAGGGAGA-AAGAAAGCTATAATATATGAGTTCATGCCGAAT 1681
Query 1342 GGGTCCCTCGACAAGTAT-ATTTCTGCGAATATGTCAACAAAGATGGAATGGGAAA-GAT 1399
|| ||||| ||||||| | || |||| ||| ||||| |||||||||||||| ||| | |
Sbjct 1682 GGATCCCTTGACAAGT-TCATCTCTGAGAAGATGTCGGCAAAGATGGAATGGAAAACG-T 1739
Query 1400 TATACGACGTTGCGGTAGGTATCTCTCGCGGCCTAGAGTATTTACACAATCGGTGTGTCA 1459
||||| || ||||||||||| | |||| |||||||| ||||| || | | ||||| |
Sbjct 1740 TATACAACATTGCGGTAGGTGTGTCTCATGGCCTAGAATATTTGCATAGCCATTGTGT-A 1798
Query 1460 -CGAGGATTGTCCATTTCGACATAAAGCCGCAGAACATACTGATGGACGAAAATCTTTGT 1518
| |||||||| |||||||| |||||||| || |||||||| ||||| | | || ||||
Sbjct 1799 TCAAGGATTGTACATTTCGATATAAAGCCACAAAACATACTCATGGATGGAGATTTTTGC 1858
Query 1519 CCTAAGATTTCAGATTTTGGTCTTGCTAAACTCTGCAAAAATAAGGAGAGCATCATATCA 1578
||||||||||| |||||||||||||||||||| ||||||||||| || |||||||| |||
Sbjct 1859 CCTAAGATTTCGGATTTTGGTCTTGCTAAACTATGCAAAAATAATGAAAGCATCATGTCA 1918
Query 1579 ATGCTACACATG-A-GAGGGACCTTTGGATACATTGCCCCTGAAATGTTTTCCAAGAATT 1636
|||||||| || | |||| || | || ||||||||||| ||| |||||||| ||| ||
Sbjct 1919 ATGCTACA--TGCAAGAGGCACGATCGGGTACATTGCCCCAGAAGTGTTTTCCCAGAGTT 1976
Query 1637 TTGGAGCAGTTTCGCATAAGTCAGATGTTTATAGTTATGGGATGGTAGTTCTTGAGATGA 1696
|||||| |||||| |||||||| ||||| ||||||||||| ||||| |||||||||||||
Sbjct 1977 TTGGAGGAGTTTCTCATAAGTCGGATGTGTATAGTTATGGAATGGTGGTTCTTGAGATGA 2036
Query 1697 TTGGAGCAAAGAATATAGAAAAGGTTGAATATTCTGGATC 1736
||||||||| ||||||||||| || | || ||| ||||||
Sbjct 2037 TTGGAGCAAGGAATATAGAAAGGGCTCAAAATTTTGGATC 2076
> Ahg948042 jgi|Araly1|948042|scaffold_704271.1
Length=921
Score = 669 bits (362), Expect = 0.0
Identities = 641/773 (83%), Gaps = 30/773 (4%)
Strand=Plus/Plus
Query 100 GTCTTCTACAAGCCAATGGTTGAAGGGTTCTCATTGTCATTGATGTTCCTCCTTGTTTCA 159
||||||| | ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 8 GTCTTCTTCGAGCCAATGGTTGAAGGG------TTGTCATTGATGTTCCTCCTTGTTTCA 61
Query 160 CATTTCTTTGTCTCAGGAGTAATGTCGAGAAACTTTACTATAGAGAACAAATGCGATTAC 219
| ||| || |||||| |||||| ||| |||||||||||||||||||||||||||||||||
Sbjct 62 CTTTTATTCGTCTCACGAGTAACGTCAAGAAACTTTACTATAGAGAACAAATGCGATTAC 121
Query 220 ACTGTCTGGCCGGGA-TTCCTAACCATGACTACTGCGGTTTCGCTCCCCACCAACGGCTT 278
||||||||||||||| || | |||| | | | | ||||| | ||| |||||| ||||||
Sbjct 122 ACTGTCTGGCCGGGAGTTTC-AACC-TCA--AGTACGGTTCCTCTCTCCACCACCGGCTT 177
Query 279 CTCCCTCAAGAAAGGGGAGTCACGTGTCATCAATGTGCCACCGTCATGGTCAGGTCGTTT 338
| ||||||||||| ||| | ||||||||||| | ||| |||||||| | ||||||||
Sbjct 178 CGAACTCAAGAAAGGAGAGGCGCGTGTCATCAACGCGCCGTCGTCATGGACTGGTCGTTT 237
Query 339 GTGGGGTAGATCGT-TCTGCTCCACCAGCTCAACAGGGAATTTCTCATGTGCCACGGGAG 397
|||||||| || | ||||||||||||||||||||||||| ||||| || ||||| ||||
Sbjct 238 CTGGGGTAGGTC-TCTCTGCTCCACCAGCTCAACAGGGAACTTCTCCTGCGCCACCGGAG 296
Query 398 ACTGCGGCTCCGGAAAAATCGAGTGCTCCG-ATTCCGGAGCAAGGCCTCCTACGACGCTA 456
| || ||||||||||||||||||||||| | | | | ||| | ||||| ||||| |||
Sbjct 297 ATTGTGGCTCCGGAAAAATCGAGTGCTCTGGAGGC-GCAGC--G-CCTCCAACGACTCTA 352
Query 457 ATTGA-TTTTACCCTTGACGCTACCGACGGTCAAGACTTCTACGATGTAAGCGTCGTGGA 515
||| |||| |||| ||| | || |||||||||||||||| ||||||||| |||||||
Sbjct 353 GCTGAGTTTT-CCCTAAACGGTCCCAACGGTCAAGACTTCTATGATGTAAGCCTCGTGGA 411
Query 516 TGGTTACAACCTTCCGTTGGTTGTGGTCCCACAACGTCTAGG-GAGTGGCCGGACATGTA 574
|||||||||||||| || || |||||||||||||||| | |||||||| ||||||
Sbjct 412 CGGTTACAACCTTCCTTTAGTGGTGGTCCCACAACGTCC-GCAGAGTGGCCAGACATGC- 469
Query 575 G-CAACGTTGGTTGTGTGGTTAACTTGAACAAGACTTGTCCGTCGGAGCTTAAAGTGATG 633
| || | ||||||| ||||| ||| ||| |||||| ||||||||||||||| | || |||
Sbjct 470 GTCAGCATTGGTTGCGTGGTCAACCTGACCAAGACGTGTCCGTCGGAGCTTCAGGTTATG 529
Query 634 GGAAGCTCTAACAAGGAACATCCCATTGCTTGCATGAACGCTTGTCAGAAATTCGGGTT- 692
|||||||| | | ||| | | || ||||||||||||||||||||||||||||||
Sbjct 530 GGAAGCTCCAGCGAGGGAGAGCCAATTGCTTGCATGAACGCTTGTCAGAAATTCAAAACA 589
Query 693 GCCGGAGTTCTGCTGCTAC-GGTGAGTACGGTAAACCTGCA-AAATGTCAACCGACGCTT 750
|| ||| ||||||||| || || |||||| || ||| || ||||||| |||| |||||
Sbjct 590 GC-GGAATTCTGCTGC-ACCGGCGAGTACTCTACGCCT-CAGAAATGTCCACCGTCGCTT 646
Query 751 TACTCTACGAATTTCAAGAACGAGTGTCCACTCGCTTATAGCTATGCTTATGACAATGAA 810
||| | | ||||||||||||||| |||||||||||||||||||||| |||||| ||| |
Sbjct 647 TACGCAAAGAATTTCAAGAACGAATGTCCACTCGCTTATAGCTATGTTTATGATGATGCA 706
Query 811 AACAACACCTTCAGATGCTCAAACTCACCTAACTATGTCATCACCTTTTGCCC 863
| || ||| |||| ||||||||||||||||||||| |||||||||||||||||
Sbjct 707 ACCAGCACATTCACATGCTCAAACTCACCTAACTACGTCATCACCTTTTGCCC 759
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 87226661050
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5