BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G38290.2
Length=1075
Score E
Sequences producing significant alignments: (Bits) Value
Ahg891941 jgi|Araly1|891941|Al_scaffold_0007_3927 1083 0.0
> Ahg891941 jgi|Araly1|891941|Al_scaffold_0007_3927
Length=726
Score = 1083 bits (586), Expect = 0.0
Identities = 692/741 (93%), Gaps = 15/741 (2%)
Strand=Plus/Plus
Query 168 ATGTTTTGTGCATCATCTTCTCCAATTACATCTCCTCTCTACCCAAAAGCTTATAAATTT 227
||||||||| |||||||| ||||||||||||||| ||||||||||||||
Sbjct 1 ATGTTTTGTTCATCATCTCCTCCAATTACATCTCTTCTCTACCCAAAAG----------- 49
Query 228 TCTCAAACAAAATCGAATTCGAAGAGATTTTCCTCTCTGCGTGCTTCGTTGCCTGTTTCT 287
|||||| |||| ||||||| |||||||||||||||||||||||||| || |||||||||
Sbjct 50 -CTCAAAAAAAACCGAATTCAAAGAGATTTTCCTCTCTGCGTGCTTCATTACCTGTTTCT 108
Query 288 GATAACAAGCTTCTTAAATTTGAATACACACCATGGCTTATTGTTGGACTTGGTAACCCT 347
||||||||| |||||| |||||||||||||||||||||| ||||||||||||||||||
Sbjct 109 GATAACAAG---CTTAAAGTTGAATACACACCATGGCTTATCGTTGGACTTGGTAACCCT 165
Query 348 GGATTAAAGTATTACGGAACAAGGCATAATATTGGTTTTGAGATGATTGATCATATAGCT 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 166 GGATTAAAGTATTACGGAACAAGGCATAATATTGGTTTTGAGATGATTGATCATATAGCT 225
Query 408 CGAGCAACGGATATTTCTATGAACACAATTCAGTCCAAGGCTTTAGTTGGGATAGGTTCT 467
| ||||||||| |||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 226 CAAGCAACGGAGATTTCTATGAACACTATACAGTCCAAGGCTTTAGTTGGGATAGGTTCT 285
Query 468 GTTGGAGAAGTTCCGATTTTGTTGGTTAAACCTCAAGGATACATGAATTTCAGTGGTGAA 527
||||||||||| ||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 286 GTTGGAGAAGTACCGATTTTGTTGGTTAAACCTCAAGCTTACATGAATTTCAGCGGTGAA 345
Query 528 TCGGTTGGGCCGTTAGCTGCTTACTACCAAATACCCTTACGTCACATTCTTATGATATAT 587
||||||||||||||||| |||||||| |||||||||||||| |||||||| |||||||||
Sbjct 346 TCGGTTGGGCCGTTAGCGGCTTACTATCAAATACCCTTACGCCACATTCTGATGATATAT 405
Query 588 GATGACATGGGTTTGTCTAATGGTGTCTTGAGACTTCAACCAAAAGGTGGGCATAGCCAA 647
||||||||||||||| |||||||||||||||| |||||||||||||| || |||||||||
Sbjct 406 GATGACATGGGTTTGCCTAATGGTGTCTTGAGGCTTCAACCAAAAGGAGGTCATAGCCAA 465
Query 648 CACAATGGATTGAAGAATGTGACAGAACATTTAAATGGTTGTCGCGGCTATCCCCGCTTA 707
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 466 CATAATGGATTGAAGAATGTGACAGAACATTTAAATGGTTGTCGCGGCTATCCCCGCTTA 525
Query 708 TCAATCGGAATTGGAAATCCACCAGGTAACATGGACATGAAAGCGTTTCTTCTCCAGAAA 767
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 526 TCAATCGGAATTGGAAATCCACCAGGTAACATGGACATGAAAGCGTTTCTTCTCCAGAAA 585
Query 768 TTCAGCCCCTTGGAGCGCAAACAGATGGATGAGGGACTGGAACAAGGTGTTGAAGGTGTG 827
|||||||||||||||||||||||||| |||| |||||| |||||||||||||||||||||
Sbjct 586 TTCAGCCCCTTGGAGCGCAAACAGATTGATGCGGGACTAGAACAAGGTGTTGAAGGTGTG 645
Query 828 AAGACACTTGTTGAAGAGGGGTTTAGTGACTCAATATCTCGATTCAATTTGGGACAGAAA 887
|||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 646 AAGACACTTGTTGAAGAGGGATTTAGTGACTCAATATCTCGATTCAATTTGGGGCAGAAA 705
Query 888 TACAAGTTTCATAAAGTTTGA 908
||||||||||| | |||||||
Sbjct 706 TACAAGTTTCACACAGTTTGA 726
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40029062850
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5