BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G38300.1
Length=1077
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494151 jgi|Araly1|494151|fgenesh2_kg.7__3584__AT5G38300.1 1447 0.0
> Ahg494151 jgi|Araly1|494151|fgenesh2_kg.7__3584__AT5G38300.1
Length=1090
Score = 1447 bits (783), Expect = 0.0
Identities = 1006/1106 (91%), Gaps = 45/1106 (4%)
Strand=Plus/Plus
Query 1 ATTAAATAAAGTCTTTTTGCAAACAACAAAATCTGGTT-------AACCAAAATAGCTCT 53
|||||||||||||||||||||||||||| ||||| ||| || |||| || |||
Sbjct 1 ATTAAATAAAGTCTTTTTGCAAACAACACAATCTAGTTCACAAAAAAAAAAAAAAGTTCT 60
Query 54 CTCTTTTACTGAAGAAGTGATC--GA-ATTTTATTCAACGATGGCGGATATAATCTCAAA 110
|||||||||||||||||||||| || ||||||| |||| ||||||||||||||||||||
Sbjct 61 CTCTTTTACTGAAGAAGTGATCGAGAGATTTTATCCAACAATGGCGGATATAATCTCAAA 120
Query 111 TCCGACCATGGAACAACTCTTCTTCTCTGTAGATCCGATGTCTCTTATACTCTCTCAAAA 170
|||| ||||||||||||| ||||||||||| ||||| |||||||||||||||||||||||
Sbjct 121 TCCGGCCATGGAACAACTGTTCTTCTCTGTTGATCCAATGTCTCTTATACTCTCTCAAAA 180
Query 171 CTCCGACACACATCAACTTAAACTCTTGTTAGACGGTTTCTCCGGATTCGAAAGAGGTCC 230
||| ||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 181 CTCAGACACACATCAGCTTAAACTCTTGTTAGATGGTTTCTCCGGATTCGAAAGAGGTCC 240
Query 231 AAGATACGATGAATACTCGAGATTACGTGAATCGAAGCTTCGCATGAAACGTGATTTTCA 290
||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 241 AAGATACGATGAATACTCGAGATTACGTGAATCAAAGCTTCGTATGAAACGTGATTTTCA 300
Query 291 GAAATTCCTCGAGGAAGAAGACGAAGTAGAAGAGCCGAGGATCAAAAAACAAGTCAGATT 350
|||||||||||||||||||||||||| ||||||||| ||||||||||||||||| || ||
Sbjct 301 GAAATTCCTCGAGGAAGAAGACGAAGAAGAAGAGCCAAGGATCAAAAAACAAGTGAGGTT 360
Query 351 CGAGGGTAATTCTGTAAATTCGCAAGAAGGTGATAAGTTTTCTCCGGAGAAGAAGAAACA 410
||||||||||||||||| ||| | |||| |||||||| || |||||||||||||||||
Sbjct 361 CGAGGGTAATTCTGTAATTTCACTAGAA---GATAAGTTCTCGCCGGAGAAGAAGAAACA 417
Query 411 GAGTCGGTTCGAGGGTATTTCAGTAATTTCAC---AAGAAGATAGGTTTTCGCCGGAGAA 467
|||||| |||||||||| |||||||||||||| ||||||||| |||| ||||||||||
Sbjct 418 GAGTCGATTCGAGGGTAATTCAGTAATTTCACAAGAAGAAGATAAGTTTACGCCGGAGAA 477
Query 468 GGTGAAGAAACAGAGTCGATTTGGGTTTTCTCCGCTGAAAAAAGCTGTTCCGTCTTCGTT 527
||||||||||||||||||||||||||| ||| ||| |||||||||||||||||||||
Sbjct 478 ---GAAGAAACAGAGTCGATTTGGGTTTTCGCCGATGAGAAAAGCTGTTCCGTCTTCGTT 534
Query 528 GGCACAATCAGTTCCTGATTTCTCTGCTGTGATACGTAAAGAGAATCGTCGTCCGGTTAA 587
||| ||||| |||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 535 GGCTCAATCTGTTCCTGATTTCTCCGCTGTGATACGTAAAGAGAATCGTCGTCCGGTTAA 594
Query 588 -TATCAACACTATTACTCCGCCACCACCGACTTCGAAGAGTAGAAACGGCGGCGTTTTGA 646
| ||||||||| ||||||||| || |||||||||||||||| ||||||||||||||||
Sbjct 595 CT-TCAACACTACTACTCCGCCTCCGCCGACTTCGAAGAGTAAAAACGGCGGCGTTTTGT 653
Query 647 CGGGATCGGCTTC-AAGAGGGAGCAAGTCGGCGAGTGCTGGAGAGAAGAAGAGTAAAGGG 705
||||||||||||| || ||||||||||||||||||||| || ||||||||||||||||||
Sbjct 654 CGGGATCGGCTTCGAA-AGGGAGCAAGTCGGCGAGTGCAGGGGAGAAGAAGAGTAAAGGG 712
Query 706 ATGATGAT--G-ATGGGAATGGCACGTAAGAGTTACGCTAATGTTGAAGATCTTAAGAAG 762
|||||||| | ||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 713 ATGATGATGGGAATGGGAATGGCGCGTAAGAGTTACGCTAATGTTGAGGATCTTAAGAAG 772
Query 763 ATTTCAATGGCGGCTGCTTCTGCTATTAATGGCGGTGGCGGTGGAGGAGGAGGAGGGAGA 822
|||||||||||||||||||||||||||||||| |||||| || |||||||||||||||
Sbjct 773 ATTTCAATGGCGGCTGCTTCTGCTATTAATGGTGGTGGC---GGCGGAGGAGGAGGGAGA 829
Query 823 AAAGTTGGTGACTGTGGTGGTGGTCGTCGGACTATTCTTGGTTACAGACAAATTTACTGA 882
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 830 AAAGTTGGTGAAGGTGGTGGTGGTCGTCGGACTATTCTTGGTTACAGACAAATTTACTGA 889
Query 883 TTTCGTTTATCAAAAGCtttgatttttacacgattttattagtt-tttt-gtgggatttt 940
||||||| |||||||||||||||||||||||||||||||||| |||| ||||| ||||
Sbjct 890 TTTCGTTC--CAAAAGCTTTGATTTTTACACGATTTTATTAGTTCTTTTTGTGGGTTTTT 947
Query 941 gattgatgagaaacaatt-ctt-ggatttgattgttgattt-gggtttttgtggcttttt 997
|||||||||||| ||||| ||| ||||||||||| |||||| ||||||||||||||||||
Sbjct 948 GATTGATGAGAAGCAATTACTTTGGATTTGATTGATGATTTTGGGTTTTTGTGGCTTTTT 1007
Query 998 tt-----ggtgtgttggtgattttgatttgtttgtAAAAAA-TAAAGCATAAATTCTTGA 1051
|| |||||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 1008 TTTTTTTGGTGTGTTGGTGATTT-GATTTGTTTGTAAAAAAATAAAGCATAAATTCTTGA 1066
Query 1052 TATTATATAACTCGTGTGATTCTTTC 1077
|||| | ||||||||||||| ||||
Sbjct 1067 TATTG-A-AACTCGTGTGATTTTTTC 1090
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40105308684
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5