BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G38310.1
Length=917
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494150 jgi|Araly1|494150|fgenesh2_kg.7__3583__AT5G38310.1 1173 0.0
> Ahg494150 jgi|Araly1|494150|fgenesh2_kg.7__3583__AT5G38310.1
Length=849
Score = 1173 bits (635), Expect = 0.0
Identities = 688/714 (96%), Gaps = 2/714 (0%)
Strand=Plus/Plus
Query 3 ACCTCACAATTTGTTTATTAAGACATTCGTGAAAAACATACTATTTGGTAGCCTTT-TTT 61
|||||||||||||||||||||||||||||||||||| ||||||||| ||||| ||| |||
Sbjct 1 ACCTCACAATTTGTTTATTAAGACATTCGTGAAAAAAATACTATTTTGTAGCTTTTATTT 60
Query 62 AATTATCGTCACAATGAGTCTTAAAAGCAGAGTTACCTCAACATCTTCACACAATCTTCA 121
||| ||| |||| |||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 61 AATAATCTTCACGATGAGTCTTAAAAGCAGAGTAACCTCAACATCTTCTCACAATCTTCA 120
Query 122 TCATTCGGAAGAAAGAGTCCCTCTCCGATCAGATTCAGACCAGTCATGTCTGAATTCAAG 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TCATTCGGAAGAAAGAGTCCCTCTCCGATCAGATTCAGACCAGTCATGTCTGAATTCAAG 180
Query 182 TCCAGAGTTCGACTTTTGTCTCCGTCAGAACTCAAAACAACGGTTTTCTCACGCCGACGA 241
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 181 TCCAGAGTTCGACTTTTGTCTCCGTCAAAACTCAAAACAACGGTTTTCTCACGCCGACGA 240
Query 242 GCTCTTCTCGTACTGGAAAAACCTTTCCCACACGGCCACCGACACTATTTCGAAGAAGAC 301
|||||||||| |||||| |||||| || ||||||||||||||||||||||||||||||||
Sbjct 241 GCTCTTCTCGGACTGGAGAAACCTCTCTCACACGGCCACCGACACTATTTCGAAGAAGAC 300
Query 302 CGAGATTACTTCTCCGAGAAGCAATCTTCAAACCCTAGCTGCGAAATCCGACACAAGAGA 361
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 CGAGATGACTTCTCCGAGAAGCAATCTTCAAACCCTAGCTGCGAAATCCGACACAAGAGA 360
Query 362 TTCTGATTCAGATGATCCAAGTTTTGGGTGTGGTTTTTGGCTTGTAAGAAGCAAATCTGT 421
|||||| |||||||||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 361 TTCTGACTCAGATGATCCAAGTTTTGGTTGTGGTTTTTGGCTTGTCAGAAGCAAATCTGT 420
Query 422 TGGGTACTCAATGAGAAACAAGAAAACAAATTCTTCTTCGGAATATCAACGGAGCAATAG 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 TGGGTACTCAATGAGAAACAAGAAAACAAATTCTTCTTCGGAATATCAACGGAGCAATAG 480
Query 482 TGATCCACATAAAAAGAAGAAGAAGAAGAGTTTGCAGAAAATGAATTCTACAGAGATTAG 541
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 481 TGATCCACATAAAAAGAAGAAGAAGAAGAGTTTGCAGAAGATGAATTCTACAGAGATTAG 540
Query 542 AGCTTCAAGATCCATGAATAGTCCGGCGTTGAATGTCCCATTGGCTGATATATTTTGCTT 601
|||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 541 AGCTCCAAGATCAATGAATAGTCCGGCGTTGAATGTCCCATTGGCTGATATATTTTGCCT 600
Query 602 AGGCCCTGTTTTTTCCGGTAGCCGTGATCGTAGAAAATGAA-GTGTGCTCTTATCTTATA 660
|||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||
Sbjct 601 AGGCCCTGTTTTTTCCGGTAGCCGTGATCGAAGAAAATGAAAGTGTGCTCTTATCTTATA 660
Query 661 ACCATGATCCTGACCTAGTTTCTGGAACATGTGAAGAGTTAGGTGTATGATTGG 714
|||||| |||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 661 ACCATGGTCCTGACCTAATTTCTGGAACATGTGAAGAGTTAGGTGTATGATTGG 714
Score = 169 bits (91), Expect = 4e-41
Identities = 125/139 (90%), Gaps = 11/139 (8%)
Strand=Plus/Plus
Query 786 ACTAAGAATCTAATTCGAG------T-TTTTTCATGTTATTGATTTGTTTGTACATTGAT 838
||||||||||||||||||| | |||||||||||||||||||||||||||||||||
Sbjct 715 ACTAAGAATCTAATTCGAGTTTTTTTGTTTTTCATGTTATTGATTTGTTTGTACATTGAT 774
Query 839 GTAACATATACGTTGGTTGTACGTAATATAGAAATGTAATTTTCACATTTCATAGAAAGA 898
||||||||||||||||||||| | |||||||||||||||||||||| |||||| ||||
Sbjct 775 GTAACATATACGTTGGTTGTA---A-TATAGAAATGTAATTTTCACATCTCATAGGAAGA 830
Query 899 AATAGACTGTACTATTTTG 917
|||| ||||||||||||||
Sbjct 831 AATATACTGTACTATTTTG 849
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34005641964
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5