BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G38317.1

Length=384
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg948034 jgi|Araly1|948034|scaffold_704263.1                        473    3e-133


> Ahg948034 jgi|Araly1|948034|scaffold_704263.1
Length=485

 Score =  473 bits (256),  Expect = 3e-133
 Identities = 310/335 (93%), Gaps = 7/335 (2%)
 Strand=Plus/Plus

Query  54   CTC-AGGTGTTAATCAGACAAGAGCAGA-TTCATGCGATGAAAGTC-TAGGCCTTTGCGA  110
            ||| || ||| ||||||||||||||| | ||||||||||||||| | ||||||||||| |
Sbjct  133  CTCTAGTTGTGAATCAGACAAGAGCA-ATTTCATGCGATGAAAG-CTTAGGCCTTTGCAA  190

Query  111  AACATGTGACGAAAGATGCCAGGCCAAACACGGGCCATCGTGCATAAGCAAATGTGACGG  170
            || |||||||||||||||| ||||||||||||| ||||| ||||||||||||||||| ||
Sbjct  191  AAAATGTGACGAAAGATGCAAGGCCAAACACGGACCATCATGCATAAGCAAATGTGATGG  250

Query  171  AGAGGTTGGGATGTTGTCGTGCACGTGCACTTACGAGTGTGGACCACCTTTACCCCCCAA  230
            |||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||
Sbjct  251  AGAGGTTGGGATGTTGTCGTGCACATGCACTTACGAGTGTGGACCAACTTTACCCCCCAA  310

Query  231  AGGTAACGTTTGCAGCGGTGGGACTGGTATGTGCAGTGGAAAGTGTCCAT-ATAAATGTT  289
            | | ||||||||||||||||||||||||||||||||||| || ||||| | |||||||||
Sbjct  311  AAGAAACGTTTGCAGCGGTGGGACTGGTATGTGCAGTGGGAATTGTCC-TGATAAATGTT  369

Query  290  GTGATACCAGTTGCGCACAAAAGTATAATGGTGGACGTGGATTTTGTAACTCCTTTGGTA  349
            |||||||||  |||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct  370  GTGATACCAACTGCGCACAAAAGTATAATGGTGGACGTGGATTTTGTAACTCCCTTGGTA  429

Query  350  ATTATAATTTTTGCCAATGCGAATACCCTTGCTAA  384
            |||||||||| ||||||||||||||||||||||||
Sbjct  430  ATTATAATTTGTGCCAATGCGAATACCCTTGCTAA  464



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 13736012040


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5