BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G38320.1
Length=820
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494148 jgi|Araly1|494148|fgenesh2_kg.7__3581__AT5G38320.1 1157 0.0
> Ahg494148 jgi|Araly1|494148|fgenesh2_kg.7__3581__AT5G38320.1
Length=811
Score = 1157 bits (626), Expect = 0.0
Identities = 754/815 (93%), Gaps = 11/815 (1%)
Strand=Plus/Plus
Query 6 CTCTAATATTTTCTCGAGA-ACATTAATAACAATGCCCGAAAACGCTAATGAAAGTCCAA 64
|||||| | ||||| |||| | ||||||||||||||| ||||| |||| ||| |||||||
Sbjct 1 CTCTAAAAATTTCTTGAGATA-ATTAATAACAATGCCGGAAAATGCTAGTGATAGTCCAA 59
Query 65 GAATCTCATTTTCTAACGATTTTTGCCACCACGAGTCCATACCAATCGAGCAGCGTACAT 124
|||||||||||||||||||||||| ||||||||| |||||||| || ||||| ||| |||
Sbjct 60 GAATCTCATTTTCTAACGATTTTTCCCACCACGATTCCATACCCATTGAGCAACGTCCAT 119
Query 125 CACAATCTCCGTATGATATCTCCAACTTCTATTGGGGCTTTCCTTTGGAGTTTTCAATAC 184
||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 120 TACAATCTCCGTTTGATATCTCCAACTTTTATTGGGGCTTTCCTTTGGAGTTTTCAATTG 179
Query 185 CCCGCGGTGCAATCTCCGGCGAGAGCTCCTGGTCCGCGGAAGAGTTCTTCAACGACGGCA 244
|||||| ||||||||||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct 180 CCCGCGATGCAATCTCCGGCGAGAGCTCGTGGTCCGCCGAAGAGTTCTTCAACGACGGCA 239
Query 245 AAATCCTCCCTATAGAAATGAAAAAGATCCCGGAACCCATATATCGTAGTAAAA-CAGAT 303
|||||||||||||||||||||||||||||||||| || ||||||||| |||||| | ||
Sbjct 240 AAATCCTCCCTATAGAAATGAAAAAGATCCCGGAGCCTATATATCGTTGTAAAAGC-GAG 298
Query 304 AAATATAAAACCGGTTTACCCAGACCTGAGATAATTCCAATCGAAGATT-TTGAACCGGT 362
|||||||||||||||||||||| ||| ||||||| ||||||||| | || ||||||||||
Sbjct 299 AAATATAAAACCGGTTTACCCAAACCGGAGATAAGTCCAATCGATG-TTGTTGAACCGGT 357
Query 363 TCTTGAAATAGAAGAAATTGGAGACCAAGAATATGAGGTAAAGTTGCCATTACTTCCTTA 422
| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 358 TTTTGAAATAGAAGAAATTGGAGACCAAGAAGATGAGGTAAAGTTGCCATTACTTCCTTA 417
Query 423 TAACTCGACCGGTTCGAATTCTATCAAGAGTCAGGTTTCGtcttcttcttcttcttcttT 482
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 418 TAACTCGACCGGTTCGAATTCTATGAAGAGTCAGGTTTCGTCTTCTTCTTCTTCTTCTTT 477
Query 483 TAACGGTAGTTTTCCGAAACCGATATTGAAGAACAACCATGGAGGTTATAACTACAAGGG 542
||||||||| |||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 478 AAACGGTAGTGTTCCGAAACCGATATTGAAGAAGAACCATGGAGGTTACAACTACAAGGG 537
Query 543 ACATGGAGGTGTGATTAGGGTGAGCTCATTTCTGGATATGGTACCTTCGGGGAATTTGTT 602
| ||||||||||||||||||||||||||||||| |||||||| ||||||||| |||||||
Sbjct 538 AAATGGAGGTGTGATTAGGGTGAGCTCATTTCTTGATATGGTTCCTTCGGGGGATTTGTT 597
Query 603 TGGGTTAGGTTCGATAAATTTTGATGGTGGAAGAAACAAAAACAAGATACGATCAATGTT 662
||| |||||||||||||||||||||||||||||||| || ||||||||| ||||||||||
Sbjct 598 TGGTTTAGGTTCGATAAATTTTGATGGTGGAAGAAAGAAGAACAAGATAAGATCAATGTT 657
Query 663 TTTCTATTGGTAAGAATGACTTTTTGTGGAGTTAAGTGAATTAGT-GT-TTT-ATTCTCT 719
||| ||||||||||||||||||||||||||||| ||||||||||| || ||| |||||||
Sbjct 658 TTTTTATTGGTAAGAATGACTTTTTGTGGAGTTCAGTGAATTAGTAGTGTTTTATTCTCT 717
Query 720 TCTATGTTTCCTTAACTTTTGTATTTCAGAATAAGTATCATTTCTCTTAATTAATCCATA 779
||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 718 TCTCTGTTTCCTTAACTTTTGTATTTCAGAATAAGTATCATTTCTCTTAATTAATACATG 777
Query 780 AAGAATTGTTTATAAA-CGTCTAAATAAATCGTTT 813
|||||||||||||||| | |||||||||||| |||
Sbjct 778 AAGAATTGTTTATAAAAC-TCTAAATAAATCTTTT 811
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30307719015
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5