BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G38344.1
Length=1158
Score E
Sequences producing significant alignments: (Bits) Value
Ahg891936 jgi|Araly1|891936|Al_scaffold_0007_3922 926 0.0
Ahg891930 jgi|Araly1|891930|Al_scaffold_0007_3916 911 0.0
Ahg891928 jgi|Araly1|891928|Al_scaffold_0007_3914 905 0.0
Ahg891933 jgi|Araly1|891933|Al_scaffold_0007_3919 752 0.0
Ahg891298 jgi|Araly1|891298|Al_scaffold_0007_3284 355 4e-97
> Ahg891936 jgi|Araly1|891936|Al_scaffold_0007_3922
Length=3162
Score = 926 bits (501), Expect = 0.0
Identities = 582/620 (94%), Gaps = 10/620 (2%)
Strand=Plus/Plus
Query 120 ATGGATTCTTCTTTTCTCTCTGGTTTTTGTGCTGCTGCCATAACCTTCTTCACTCTTTTC 179
||||||||||||||||||||| ||||||||| |||||||||||| |||||||| |||||
Sbjct 1 ATGGATTCTTCTTTTCTCTCTAGTTTTTGTGTTGCTGCCATAACTTTCTTCACGCTTTTG 60
Query 180 GGTACAATATATTTCATGTTTTATAGAAAAGGCAAATCCCATCAAGAAAACAAAACAATA 239
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 61 GGTACAATATATTTCATGTTTTATAGAAAAGTCAAATCCCATCAAGAAAACAAAACAATA 120
Query 240 GCTTC-T-T-C-T-TT-AATATCTATTTCATCTACTCCATCTTCTTTACCTCGAAAACGG 293
||||| | | | | || ||||| |||||||||||||||||||||| ||||||| |||
Sbjct 121 GCTTCTTCTCCTTCTTCTTTATCTCTTTCATCTACTCCATCTTCTTTGTCTCGAAATCGG 180
Query 294 AAACACGATGTCTTCCCTAGCTTCCACGGGGCAGATGTTCGCAAAACCTTTCTTGCTCAC 353
||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||
Sbjct 181 AAACACGATGTCTTCCCCAGCTTCCACGGGGCAGATGTTCGCAAAAACTTTCTTGCTCAC 240
Query 354 ATCCTAAAAGAGTTCAAAGGGAAA-GGAGTCGTTCCATTCATTGATAATGATATCGAGAG 412
|||||||||||||||||| ||||| ||| |||||||||||||||||||||||||||||||
Sbjct 241 ATCCTAAAAGAGTTCAAA-GGAAAGGGAATCGTTCCATTCATTGATAATGATATCGAGAG 299
Query 413 GAGCAAGTCTATCGGTCCTGAGCTCATAGAAGCTATTAGAGGATCGAAGATCGCGATCGT 472
|||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct 300 GAGCAAGTCTATCGGTCCTGAGCTCATAGAAGCTATAAAAGGATCGAAGATCGCGATCGT 359
Query 473 CTTGCTCTCAAGGAACTATGCTTCTTCTTCGTGGTGCTTAAACGAGTTGGTGGAGATCAT 532
||||||||| |||||||| |||||||| || |||||||||||||||||||||||||||||
Sbjct 360 CTTGCTCTCGAGGAACTACGCTTCTTCGTCTTGGTGCTTAAACGAGTTGGTGGAGATCAT 419
Query 533 GAAGTGTAGAGAACAGTTGGGTCAAACAGTGATGACCATTTTCTATGACGTTGATCCAAC 592
||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 GAATTGTAGAGAAGAGTTGGGTCAAACAGTGATGACCATTTTCTATGACGTTGATCCAAC 479
Query 593 AGACGTAAAGAAGCAGACAGGAGATTTTGGGAAGGTCTTCAAGAAAACTTGTAAAGGTAA 652
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 480 AGACGTAAAGAAGCAGACAGGAGATTTTGGGAAGGTCTTCAAGAAAACGTGTAAAGGTAA 539
Query 653 A-CCAAAAGAGGAAATTAAGAGATGGCAAAAAGTTTTGGAGGATGTGGCAACAATCGCTG 711
| ||||| ||||| ||||||||||||||||| |||||||||| |||||||||||||||||
Sbjct 540 AACCAAA-GAGGACATTAAGAGATGGCAAAACGTTTTGGAGGCTGTGGCAACAATCGCTG 598
Query 712 GGGAGCATTCCCGTAACTGG 731
||||||||||| ||||||||
Sbjct 599 GGGAGCATTCCTGTAACTGG 618
> Ahg891930 jgi|Araly1|891930|Al_scaffold_0007_3916
Length=2952
Score = 911 bits (493), Expect = 0.0
Identities = 582/623 (93%), Gaps = 13/623 (2%)
Strand=Plus/Plus
Query 120 ATGGATTCTTCTTTTCTCTCTGGTTTTTGTGCTGCTGCCATAACCTTCTTCACTCTTTTC 179
||||||||||||||||||||| ||||||||| |||||||||||| |||||||| |||||
Sbjct 1 ATGGATTCTTCTTTTCTCTCTAGTTTTTGTGTTGCTGCCATAACTTTCTTCACGCTTTTG 60
Query 180 GGTACAATATATTTCATGTTTTATAGAAAAGGCAAATCCCATCAAGAAAACAAAACAATA 239
|||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 61 GGTACAATATTTTTCATGTTTTATAGAAAAGTCAAATCCCATCAAGAAAACAAAACAATA 120
Query 240 G------CTTCTTCTT-TA--ATATCTATTTCATCTACTCCATCTTCTTTACCTCGAAAA 290
| ||||||||| || |||||||||||||||||||||||||||| |||||||
Sbjct 121 GCTTCTTCTTCTTCTTCTACTTTATCTATTTCATCTACTCCATCTTCTTTGTCTCGAAAT 180
Query 291 CGGAAACACGATGTCTTCCCTAGCTTCCACGGGGCAGATGTTCGCAAAACCTTTCTTGCT 350
|||||||||||||||||||| ||||||||||||||||||||| | ||||| |||||||||
Sbjct 181 CGGAAACACGATGTCTTCCCAAGCTTCCACGGGGCAGATGTTAGAAAAACATTTCTTGCT 240
Query 351 CACATCCTAAAAGAGTTCAAAGGGAAA-GGAGTCGTTCCATTCATTGATAATGATATCGA 409
||||||||||||||||||||| ||||| ||| ||||||||||||||||||||||||||||
Sbjct 241 CACATCCTAAAAGAGTTCAAA-GGAAAGGGAATCGTTCCATTCATTGATAATGATATCGA 299
Query 410 GAGGAGCAAGTCTATCGGTCCTGAGCTCATAGAAGCTATTAGAGGATCGAAGATCGCGAT 469
||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct 300 GAGGAGCAAGTCTATCGGTCCTGAGCTCATAGAAGCTATAAAAGGATCGAAGATCGCGAT 359
Query 470 CGTCTTGCTCTCAAGGAACTATGCTTCTTCTTCGTGGTGCTTAAACGAGTTGGTGGAGAT 529
|||||||||||| |||||||| |||||||| || ||||||||||||||||||||||||||
Sbjct 360 CGTCTTGCTCTCGAGGAACTACGCTTCTTCGTCTTGGTGCTTAAACGAGTTGGTGGAGAT 419
Query 530 CATGAAGTGTAGAGAACAGTTGGGTCAAACAGTGATGACCATTTTCTATGACGTTGATCC 589
|||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 CATGAATTGTAGAGAAGAGTTGGGTCAAACAGTGATGACCATTTTCTATGACGTTGATCC 479
Query 590 AACAGACGTAAAGAAGCAGACAGGAGATTTTGGGAAGGTCTTCAAGAAAACTTGTAAAGG 649
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 480 AACAGACGTAAAGAAGCAGACAGGAGATTTTGGGAAGGTCTTCAAGAAAACGTGTAAAGG 539
Query 650 TAAA-CCAAAAGAGGAAATTAAGAGATGGCAAAAAGTTTTGGAGGATGTGGCAACAATCG 708
|||| ||||| ||||| ||||||||||||||||| |||||||||| ||||||||||||||
Sbjct 540 TAAAACCAAA-GAGGACATTAAGAGATGGCAAAACGTTTTGGAGGCTGTGGCAACAATCG 598
Query 709 CTGGGGAGCATTCCCGTAACTGG 731
|||||||||||||||||||||||
Sbjct 599 CTGGGGAGCATTCCCGTAACTGG 621
> Ahg891928 jgi|Araly1|891928|Al_scaffold_0007_3914
Length=651
Score = 905 bits (490), Expect = 0.0
Identities = 599/650 (92%), Gaps = 13/650 (2%)
Strand=Plus/Plus
Query 120 ATGGATTCTTCTTTTCTCTCTGGTTTTTGTGCTGCTGCCATAACCTTCTTCACTCTTTTC 179
||||||||| ||||||||||| ||||||||| |||||||||||| |||||||| ||||
Sbjct 1 ATGGATTCTGCTTTTCTCTCTAGTTTTTGTGTTGCTGCCATAACTTTCTTCACGATTTTG 60
Query 180 GGTACAATATATTTCATGTTTTATAGAAAAGGCAAATCCCATCAAGAAAACAAAACAATA 239
|||||||||| |||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 61 GGTACAATATTTTTCATGTTTTATAAAAAAGTCAAATCCCATCAAGAAAACAAAACAATA 120
Query 240 G---CTTCTTC-T-TT-AATATCTATTTCATCTACTCCATCTTCTTTACCTCGAAAACGG 293
| ||||||| | || ||||||||||||||||| |||||||||| |||||||||||
Sbjct 121 GCTTCTTCTTCTTCTTCTTTATCTATTTCATCTACTTCATCTTCTTTGTCTCGAAAACGG 180
Query 294 AAACACGATGTCTTCCCTAGCTTCCACGGGGCAGATGTTCGCAAAACCTTTCTTGCTCAC 353
||||||||||||||||| ||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 181 AAACACGATGTCTTCCCAAGCTTCCACGGGGCAGATGTTCGAAAAACATTTCTTGCTCAC 240
Query 354 ATCCTAAAAGAGTTCAAAGGGAAA-GGAGTC-GTTCCATTCATTGATAATGATATCGAGA 411
|||||||||||||||||| ||||| ||| || | ||||||||||||||||||||||||||
Sbjct 241 ATCCTAAAAGAGTTCAAA-GGAAAGGGAATCAG-TCCATTCATTGATAATGATATCGAGA 298
Query 412 GGAGCAAGTCTATCGGTCCTGAGCTCATAGAAGCTATTAGAGGATCGAAGATCGCGATCG 471
||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct 299 GGAGCAAGTCTATCGGTCCTGAGCTCATAGAAGCTATCAGAGGATCAAAGATCGCGATCG 358
Query 472 TCTTGCTCTCAAGGAACTATGCTTCTTCTTCGTGGTGCTTAAACGAGTTGGTGGAGATCA 531
|||||||||| |||||||| |||||||| || |||||| |||||||||||||||||||||
Sbjct 359 TCTTGCTCTCGAGGAACTACGCTTCTTCGTCTTGGTGCCTAAACGAGTTGGTGGAGATCA 418
Query 532 TGAAGTGTAGAGAACAGTTGGGTCAAACAGTGATGACCATTTTCTATGACGTTGATCCAA 591
|||||||||||||| | ||||||||||||||||||||||||||||||| ||||||||||
Sbjct 419 TGAAGTGTAGAGAAGAACTGGGTCAAACAGTGATGACCATTTTCTATGATGTTGATCCAA 478
Query 592 CAGACGTAAAGAAGCAGACAGGAGATTTTGGGAAGGTCTTCAAGAAAACTTGTAAAGGTA 651
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 479 CAGACGTAAAGAAGCAGACAGGAGATTTTGGGAAGGTCTTCAAGAAAACGTGTAAAGGTA 538
Query 652 AA-CCAAAAGAGGAAATTAAGAGATGGCAAAAAGTTTTGGAGGATGTGGCAACAATCGCT 710
|| ||||| ||||| ||||||||||||||||| ||||||||| ||||||||||||||||
Sbjct 539 AAACCAAA-GAGGACATTAAGAGATGGCAAAACGTTTTGGAGTCTGTGGCAACAATCGCT 597
Query 711 GGGGAGCATTCCCGTAACTGGTTAGCTTTCTGGATTTATATTTTGCTCTG 760
||||||||||||||||||||||||||||||| |||||||| || || |||
Sbjct 598 GGGGAGCATTCCCGTAACTGGTTAGCTTTCTTGATTTATACTT-GCCCTG 646
> Ahg891933 jgi|Araly1|891933|Al_scaffold_0007_3919
Length=3678
Score = 752 bits (407), Expect = 0.0
Identities = 496/537 (92%), Gaps = 13/537 (2%)
Strand=Plus/Plus
Query 206 AAAAGGCAAATCCCATCAAGAAAACAAAACAATAG------CTTCTTC-T-TT-AATATC 256
||||| ||||||||||||||||||||||||||||| ||||||| | || ||||
Sbjct 618 AAAAGTCAAATCCCATCAAGAAAACAAAACAATAGCTTCTTCTTCTTCTTCTTCTTTATC 677
Query 257 TATTTCATCTACTCCATCTTCTTTACCTCGAAAACGGAAACACGATGTCTTCCCTAGCTT 316
| |||||||||||||||||||||| ||||||| |||||||||||||||||||| |||||
Sbjct 678 TCTTTCATCTACTCCATCTTCTTTGTCTCGAAATCGGAAACACGATGTCTTCCCAAGCTT 737
Query 317 CCACGGGGCAGATGTTCGCAAAACCTTTCTTGCTCACATCCTAAAAGAGTTCAAAGGGAA 376
|||||||||||||||||| ||||| |||||||||||||||||||||||||||||| ||||
Sbjct 738 CCACGGGGCAGATGTTCGAAAAACATTTCTTGCTCACATCCTAAAAGAGTTCAAA-GGAA 796
Query 377 A-GGAGTCGTTCCATTCATTGATAATGATATCGAGAGGAGCAAGTCTATCGGTCCTGAGC 435
| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 797 AGGGAATCGTTCCATTCATTGATAATGATATCGAGAGGAGCAAGTCTATCGGTCCTGAGC 856
Query 436 TCATAGAAGCTATTAGAGGATCGAAGATCGCGATCGTCTTGCTCTCAAGGAACTATGCTT 495
|| |||||||||| |||||||| |||||||| |||||||||||||| |||||||| ||||
Sbjct 857 TCGTAGAAGCTATCAGAGGATCAAAGATCGCAATCGTCTTGCTCTCGAGGAACTACGCTT 916
Query 496 CTTCTTCGTGGTGCTTAAACGAGTTGGTGGAGATCATGAAGTGTAGAGAACAGTTGGGTC 555
|||| |||||||| ||||||||||||||||| |||||||||||||||||| | |||||||
Sbjct 917 CTTCGTCGTGGTGTTTAAACGAGTTGGTGGAAATCATGAAGTGTAGAGAAGAATTGGGTC 976
Query 556 AAACAGTGATGACCATTTTCTATGACGTTGATCCAACAGACGTAAAGAAGCAGACAGGAG 615
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 977 AAACAGTGATGACCATTTTCTATGACGTTGATCCAACGGACGTAAAGAAGCAGACAGGAG 1036
Query 616 ATTTTGGGAAGGTCTTCAAGAAAACTTGTAAAGGTAAA-CCAAAAGAGGAAATTAAGAGA 674
||||||||||||||||||||||||| |||||||||||| ||||| ||||| |||||||||
Sbjct 1037 ATTTTGGGAAGGTCTTCAAGAAAACGTGTAAAGGTAAAACCAAA-GAGGACATTAAGAGA 1095
Query 675 TGGCAAAAAGTTTTGGAGGATGTGGCAACAATCGCTGGGGAGCATTCCCGTAACTGG 731
|||||||| |||||||||| |||||||||||||||||||||||||||| ||||||||
Sbjct 1096 TGGCAAAACGTTTTGGAGGCTGTGGCAACAATCGCTGGGGAGCATTCCTGTAACTGG 1152
> Ahg891298 jgi|Araly1|891298|Al_scaffold_0007_3284
Length=3666
Score = 355 bits (192), Expect = 4e-97
Identities = 262/296 (89%), Gaps = 4/296 (1%)
Strand=Plus/Plus
Query 357 CTAAAAGAGTTCAAAGGGAAA-GGAGTCGTTC-CATTCATTGATAATGATATCGAGAGGA 414
||||||||||||||| ||||| ||| ||| | |||| ||||||||||||||||||||||
Sbjct 4 CTAAAAGAGTTCAAA-GGAAAGGGAATCG-ACTCATTTATTGATAATGATATCGAGAGGA 61
Query 415 GCAAGTCTATCGGTCCTGAGCTCATAGAAGCTATTAGAGGATCGAAGATCGCGATCGTCT 474
|||||| |||||||||||||||| ||||||||| ||||||||||||||||||||||||
Sbjct 62 CCAAGTCAATCGGTCCTGAGCTCAAAGAAGCTATCCGAGGATCGAAGATCGCGATCGTCT 121
Query 475 TGCTCTCAAGGAACTATGCTTCTTCTTCGTGGTGCTTAAACGAGTTGGTGGAGATCATGA 534
|||| || || |||||||||||||| || |||||||||||||||||| ||||||||||||
Sbjct 122 TGCTTTCGAGAAACTATGCTTCTTCGTCATGGTGCTTAAACGAGTTGATGGAGATCATGA 181
Query 535 AGTGTAGAGAACAGTTGGGTCAAACAGTGATGACCATTTTCTATGACGTTGATCCAACAG 594
| || || || | |||||||||| ||| ||||||||||||||||| || ||||||||||
Sbjct 182 ATTGCAGGGAGGATTTGGGTCAAATAGTAATGACCATTTTCTATGAAGTAGATCCAACAG 241
Query 595 ACGTAAAGAAGCAGACAGGAGATTTTGGGAAGGTCTTCAAGAAAACTTGTAAAGGT 650
| |||||||| || || |||||||||||||||| |||||| |||||||||||||||
Sbjct 242 ATGTAAAGAAACAAACCGGAGATTTTGGGAAGGCCTTCAAAAAAACTTGTAAAGGT 297
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43193264961
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5