BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G38360.1
Length=1282
Score E
Sequences producing significant alignments: (Bits) Value
Ahg330628 jgi|Araly1|330628|fgenesh1_pm.C_scaffold_7002855 1218 0.0
Ahg948018 jgi|Araly1|948018|scaffold_704247.1 1051 0.0
Ahg887739 jgi|Araly1|887739|Al_scaffold_0686_1 826 0.0
Ahg356158 jgi|Araly1|356158|fgenesh1_pg.C_scaffold_7003331 664 0.0
Ahg891923 jgi|Araly1|891923|Al_scaffold_0007_3909 484 5e-136
Ahg356160 jgi|Araly1|356160|fgenesh1_pg.C_scaffold_7003333 459 3e-128
> Ahg330628 jgi|Araly1|330628|fgenesh1_pm.C_scaffold_7002855
Length=846
Score = 1218 bits (659), Expect = 0.0
Identities = 788/848 (93%), Gaps = 17/848 (2%)
Strand=Plus/Plus
Query 223 ATGGAGGTAATCGAGCAGA-GAA-AATCCAAATCCGAAAGAGAGAATCCACCATTGGTGT 280
|||||||||||||| || | ||| || ||||||||||||||||||||||||||||||||
Sbjct 1 ATGGAGGTAATCGAACA-ACGAAGAA-GCAAATCCGAAAGAGAGAATCCACCATTGGTGT 58
Query 281 TTGTACATGGAAGCTATCACGCAGCTTGGTGTTGGGCTGAAAATTGGTTACCTTTCTTCT 340
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 59 TTGTACATGGAAGCTATCACGCAGCTTGGTGTTGGGCTGAACATTGGTTACCTTTCTTCT 118
Query 341 CTTCTTCTGGGTTTGATTCTTATGCTGTTAGTTTATTAGGTCAGGGTGAAAGTGATGAAC 400
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 119 CTTCTTCTGGGTTTGATTCTTATGCTGTTAGTTTATTAGGTCAGGGTGAAAGTGATGAAC 178
Query 401 CTTTGGGAACAGTTGCTGGAACACTTCAGACGCACGCAAGTGATATTGCAGATTTTATAG 460
||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || |
Sbjct 179 CTTTGGGAACAGTTGCTGGAACACTTCAGACGCACGCAAGTGATATTGCGGATTTCATTG 238
Query 461 AATCGAATCTTGGCTCTTCACCTCCTGTTCTTGTTGGTCATTCTTTTGGAGGACTCATTG 520
||||||||||||| |||||||||||||| ||| |||||||||||||||||||||||||||
Sbjct 239 AATCGAATCTTGGTTCTTCACCTCCTGTGCTTATTGGTCATTCTTTTGGAGGACTCATTG 298
Query 521 TTCAATATTACTTGGCAAATATTGTAAACAAGC-GTTCATTAGGTACGGAAAATGCGTTT 579
||||||||||||||||||||||||||||||||| | | ||||| |||||||||||||||
Sbjct 299 TTCAATATTACTTGGCAAATATTGTAAACAAGCAGA-CGTTAGGAACGGAAAATGCGTTT 357
Query 580 CCAGAGCTTTCAGGGGCGGTAATGGTTTGCTCGGTTCCACCTTCCGGTAATAGCGGCTTA 639
||||| |||||||||| ||| | |||||||||||||||||||| |||||||||||||||
Sbjct 358 CCAGAACTTTCAGGGGTTGTACTTGTTTGCTCGGTTCCACCTTCGGGTAATAGCGGCTTA 417
Query 640 GTGTTACGTTATCTCTTTTCTAAACCTGTGGCTGCTTTTAAGGTTACTCTCAGTTTAGCT 699
|| |||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 418 GTTTTACGTTATCTCTTCTCGAAACCTGTGGCTGCTTTTAAGGTTACTCTCAGTTTAGCT 477
Query 700 GCTAAAGGTTTTCAGAAATCTATTCCTCTTTGTCGAGAAACATTCTTCTCTCAAGCCATG 759
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 478 GCTAAAGGTTTTCAGAAATCTATTCCCCTTTGTCGAGAAACATTCTTCTCTCAAGCTATG 537
Query 760 GATGATCAACTTGTGAAG-----C--GGATCTTATGAGT-GAGAGTTCACGAATACCGTT 811
|||||||||||||||||| | ||||||||||| | ||||||||||| || ||| |
Sbjct 538 GATGATCAACTTGTGAAGTGTTACCAGGATCTTATGA-TAGAGAGTTCACGGATGCCGCT 596
Query 812 GTTTGATTTGAGAAAGCTAAACGCATCACTTCCAGTACCAAAACCAATGGAGAATTCGAC 871
||||||| |||| |||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 597 GTTTGATCTGAGGAAGCTAAACGCATCACTTCCAGTACCAAAACCAATGGAAAATTCTAC 656
Query 872 CAAGGTTCTTGTTTTAGGTGCCAAAGATGACTTCATAGTGGAC-GATGAAGGACTGAAGG 930
|| |||||||||||||||||||||||||||||||||||||| | ||| || |||||||
Sbjct 657 AAATGTTCTTGTTTTAGGTGCCAAAGATGACTTCATAGTGGATTG-TGAGGGGCTGAAGG 715
Query 931 AAACCGGGAGGTTTTATGAGGTTGAACCGGTTTGTATTAAAGGTGTTGCTCATGACATGA 990
|||||||| ||||||||||||||||||| ||||||||| |||||||||||||||||||||
Sbjct 716 AAACCGGGTGGTTTTATGAGGTTGAACCAGTTTGTATTGAAGGTGTTGCTCATGACATGA 775
Query 991 TGCTTGATTGTTCATGGGAGAAAGGTGCTAAGGTTCTTTTGAGTTGGCTATGTGATTTAT 1050
|||| |||||||||||||||||||||||| ||||||||||||||||||| |||| ||| |
Sbjct 776 TGCTAGATTGTTCATGGGAGAAAGGTGCTGAGGTTCTTTTGAGTTGGCTTTGTGGTTTGT 835
Query 1051 CTAAACCG 1058
||||||||
Sbjct 836 CTAAACCG 843
> Ahg948018 jgi|Araly1|948018|scaffold_704247.1
Length=791
Score = 1051 bits (569), Expect = 0.0
Identities = 711/777 (92%), Gaps = 20/777 (3%)
Strand=Plus/Plus
Query 73 ATGGCGTCTTCTTCACTTCCCTCGTTCCCATGCCTATCCT-ACT-TC-A-AAATGCCCAT 128
|||||||||||||| ||| | || |||||||||||||||| || | | || ||||||
Sbjct 24 ATGGCGTCTTCTTCTCTTACTTCATTCCCATGCCTATCCTCGCTGACGATTAA-GCCCAT 82
Query 129 AGCAGCTCTCACCAATTCCCCTAGAAC-AACGATTCCATAC-AACCTGAAAAAGGGGCAA 186
||||||||||||||| |||| ||||| || | ||||||| || |||||||||||||||
Sbjct 83 GGCAGCTCTCACCAATCCCCCAAGAACGAA-AACTCCATACGAA-CTGAAAAAGGGGCAA 140
Query 187 ACCCGCCTTTTGCACAAGCTTCCCTCTGGTCTAAAAATGGAGGTAATCGAGCAGA-GAA- 244
| ||| || || |||||||||||||||||||||||||||||||||||||| || | |||
Sbjct 141 AACCGTCTCTTCCACAAGCTTCCCTCTGGTCTAAAAATGGAGGTAATCGAACA-ACGAAG 199
Query 245 AATCCAAATCCGAAAGAGAGAATCCACCATTGGTGTTTGTACATGGAAGCTATCACGCAG 304
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 200 AA-GCAAATCCGAAAGAGAGAATCCACCATTGGTGTTTGTACATGGAAGCTATCACGCAG 258
Query 305 CTTGGTGTTGGGCTGAAAATTGGTTACCTTTCTTCTCTTCTTCTGGGTTTGATTCTTATG 364
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 259 CTTGGTGTTGGGCTGAACATTGGTTACCTTTCTTCTCTTCTTCTGGGTTTGATTCTTATG 318
Query 365 CTGTTAGTTTATTAGGTCAGGGTGAAAGTGATGAACCTTTGGGAACAGTTGCTGGAACAC 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 319 CTGTTAGTTTATTAGGTCAGGGTGAAAGTGATGAACCTTTGGGAACAGTTGCTGGAACAC 378
Query 425 TTCAGACGCACGCAAGTGATATTGCAGATTTTATAGAATCGAATCTTGGCTCTTCACCTC 484
||||||||||||||||||||||||| ||||| || |||||||||||||| ||||||||||
Sbjct 379 TTCAGACGCACGCAAGTGATATTGCGGATTTCATTGAATCGAATCTTGGTTCTTCACCTC 438
Query 485 CTGTTCTTGTTGGTCATTCTTTTGGAGGACTCATTGTTCAATATTACTTGGCAAATATTG 544
|||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 439 CTGTGCTTATTGGTCATTCTTTTGGAGGACTCATTGTTCAATATTACTTGGCAAATATTG 498
Query 545 TAAACAAGC-GTTCATTAGGTACGGAAAATGCGTTTCCAGAGCTTTCAGGGGCGGTAATG 603
||||||||| | | ||||| |||||||||||||||||||| |||||||||| ||| |
Sbjct 499 TAAACAAGCAGA-CGTTAGGAACGGAAAATGCGTTTCCAGAACTTTCAGGGGTTGTACTT 557
Query 604 GTTTGCTCGGTTCCACCTTCCGGTAATAGCGGCTTAGTGTTACGTTATCTCTTTTCTAAA 663
|||||||||||||||||||| ||||||||||||||||| |||||||||||||| || |||
Sbjct 558 GTTTGCTCGGTTCCACCTTCGGGTAATAGCGGCTTAGTTTTACGTTATCTCTTCTCGAAA 617
Query 664 CCTGTGGCTGCTTTTAAGGTTACTCTCAGTTTAGCTGCTAAAGGTTTTCAGAAATCTATT 723
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 618 CCTGTGGCTGCTTTTAAGGTTACTCTCAGTTTAGCTGCTAAAGGTTTTCAGAAATCTATT 677
Query 724 CCTCTTTGTCGAGAAACATTCTTCTCTCAAGCCATGGATGATCAACTTGTGAAGC-GGAT 782
|| ||||||||||||||||||||||||||||| ||||||||||||||| | | | ||||
Sbjct 678 CCCCTTTGTCGAGAAACATTCTTCTCTCAAGCTATGGATGATCAACTTTT-AC-CAGGAT 735
Query 783 CTTATGAGT-GAGAGTTCACGAATACCGTTGTTTGATTTGAGAAAGCTAAACGCATC 838
||||||| | ||||||||||| || ||| |||||||| |||| ||||||||||||||
Sbjct 736 CTTATGA-TAGAGAGTTCACGGATGCCGCTGTTTGATCTGAGGAAGCTAAACGCATC 791
> Ahg887739 jgi|Araly1|887739|Al_scaffold_0686_1
Length=651
Score = 826 bits (447), Expect = 0.0
Identities = 569/625 (91%), Gaps = 19/625 (3%)
Strand=Plus/Plus
Query 73 ATGGCGTCTTCTTCACTTCCCTCGTTCCCATGCCTATCCTACTTC--AA--A--A-T--G 123
|||||||||||||| ||| | |||||||||||||| |||| |||| || | | | |
Sbjct 1 ATGGCGTCTTCTTCTCTTACTTCGTTCCCATGCCTTTCCTCCTTCAAAATGACGATTAAG 60
Query 124 CCCATAGCAGCTCTCACCAATTCCCCTAGAAC-AACGATTCCATAC-AACCTGAAAAAGG 181
||||||||||||||||||||| |||| ||||| || | ||||||| || ||||||||||
Sbjct 61 CCCATAGCAGCTCTCACCAATCCCCCAAGAACGAA-AACTCCATACGAA-CTGAAAAAGG 118
Query 182 GGCAAACCCGCCTTTTGCACAAGCTTCCCTCTGGTCTAAAAATGGAGGTAATCGAGCAGA 241
|||||| ||| || || |||||||||||||||||||||||||||||||||||||| || |
Sbjct 119 GGCAAAACCGTCTCTTCCACAAGCTTCCCTCTGGTCTAAAAATGGAGGTAATCGAACA-A 177
Query 242 -GAA-AATCCAAATCCGAAAGAGAGAATCCACCATTGGTGTTTGTACATGGAAGCTATCA 299
||| || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 178 CGAAGAA-GCAAATCCGAAAGAGAGAATCCACCATTGGTGTTTGTACATGGAAGCTATCA 236
Query 300 CGCAGCTTGGTGTTGGGCTGAAAATTGGTTACCTTTCTTCTCTTCTTCTGGGTTTGATTC 359
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 237 CGCAGCTTGGTGTTGGGCTGAACATTGGTTACCTTTCTTCTCTTCTTCTGGGTTTGATTC 296
Query 360 TTATGCTGTTAGTTTATTAGGTCAGGGTGAAAGTGATGAACCTTTGGGAACAGTTGCTGG 419
|||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||
Sbjct 297 TTATGCTGTTAGTTTACTAGGTCAGGGTGAAAGTGATGATCCTTTGGGAACAGTTGCTGG 356
Query 420 AACACTTCAGACGCACGCAAGTGATATTGCAGATTTTATAGAATCGAATCTTGGCTCTTC 479
||||||||||||||| |||||||| ||||| |||||||| |||| |||||||||||||||
Sbjct 357 AACACTTCAGACGCATGCAAGTGAAATTGCGGATTTTATCGAATTGAATCTTGGCTCTTC 416
Query 480 ACCTCCTGTTCTTGTTGGTCATTCTTTTGGAGGACTCATTGTTCAATATTACTTGGCAAA 539
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 417 ACCTCCTGTTCTTATTGGTCATTCTTTTGGAGGACTCATTGTTCAATATTACTTGGCAAA 476
Query 540 TATTGTAAACAAGC-GTTCATTAGGTACGGAAAATGCGTTTCCAGAGCTTTCAGGGGCGG 598
|||||||||||||| | | ||||| |||||||||||||||||||| |||||||||| |
Sbjct 477 TATTGTAAACAAGCAGA-CGTTAGGAACGGAAAATGCGTTTCCAGAACTTTCAGGGGTTG 535
Query 599 TAATGGTTTGCTCGGTTCCACCTTCCGGTAATAGCGGCTTAGTGTTACGTTATCTCTTTT 658
|| | |||||||||||||||||||| ||||||||| ||||||| || ||||||||||| |
Sbjct 536 TACTTGTTTGCTCGGTTCCACCTTCGGGTAATAGCAGCTTAGTTTTTCGTTATCTCTTCT 595
Query 659 CTAAACCTGTGGCTGCTTTTAAGGT 683
|||||||||||||||||||||||||
Sbjct 596 CTAAACCTGTGGCTGCTTTTAAGGT 620
> Ahg356158 jgi|Araly1|356158|fgenesh1_pg.C_scaffold_7003331
Length=633
Score = 664 bits (359), Expect = 0.0
Identities = 432/466 (93%), Gaps = 9/466 (2%)
Strand=Plus/Plus
Query 567 GGAAAATGCGTTTCCAGAGCTTTCAGGGGCGGTAATGGTTTGCTCGGTTCCACCTTCCGG 626
|||||||||||||||||| ||||||||||| ||| | |||||||||||||||||||| ||
Sbjct 144 GGAAAATGCGTTTCCAGAACTTTCAGGGGCTGTACTTGTTTGCTCGGTTCCACCTTCGGG 203
Query 627 TAATAGCGGCTTAGTGTTACGTTATCTCTTTTCTAAACCTGTGGCTGCTTTTAAGGTTAC 686
|||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 204 TAATAGTGGCTTAGTGTTACGTTATCTCTTCTCTAAACCTGTGGCTGCTTTTAAGGTTAC 263
Query 687 TCTCAGTTTAGCTGCTAAAGGTTTTCAGAAATCTATTCCTCTTTGTCGAGAAACATTCTT 746
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 264 TCTCAGTTTAGCTGCTAAAGGTTTTCAGAAATCTATTCCTCTTTGTCGAGAAACATTCTT 323
Query 747 CTCTCAAGCCATGGATGATCAACTTGTGAAGCG------G-ATCTTATGAGT-GAGAGTT 798
||||||||| ||||||||||||||||||||||| | ||||||||| | |||||||
Sbjct 324 CTCTCAAGCTATGGATGATCAACTTGTGAAGCGTTACCAGGATCTTATGA-TAGAGAGTT 382
Query 799 CACGAATACCGTTGTTTGATTTGAGAAAGCTAAACGCATCACTTCCAGTACCAAAACCAA 858
|||| || ||| |||||||| |||| ||||||||||||||||||||||||||||||||||
Sbjct 383 CACGGATGCCGCTGTTTGATCTGAGGAAGCTAAACGCATCACTTCCAGTACCAAAACCAA 442
Query 859 TGGAGAATTCGACCAAGGTTCTTGTTTTAGGTGCCAAAGATGACTTCATAGTGGACGATG 918
|||| ||||| || || |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 443 TGGAAAATTCTACAAATGTTCTTGTTTTAGGTGCCAAAGATGACTTCATAGTGGATGATG 502
Query 919 AAGGACTGAAGGAAACCGGGAGGTTTTATGAGGTTGAACCGGTTTGTATTAAAGGTGTTG 978
| || ||||||||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 503 AGGGGCTGAAGGAAACCGGGCGGTTTTATGAGGTTGAACCGGTTTGTATTGAAGGTGTTG 562
Query 979 CTCATGACATGATGCTTGATTGTTCATGGGAGAAAGGTGCTAAGGT 1024
|||||||||||||||| ||||||||||||||||||||| || ||||
Sbjct 563 CTCATGACATGATGCTAGATTGTTCATGGGAGAAAGGTTCTGAGGT 608
> Ahg891923 jgi|Araly1|891923|Al_scaffold_0007_3909
Length=408
Score = 484 bits (262), Expect = 5e-136
Identities = 333/365 (91%), Gaps = 13/365 (4%)
Strand=Plus/Plus
Query 73 ATGGCGTCTTCTTCACTTCCCTCGTTCCCATGCCTATCCT-ACT-TC-A-AAATGCCCAT 128
|||||||||||||| ||| | || |||||||||||||||| || | | || ||||||
Sbjct 1 ATGGCGTCTTCTTCTCTTACTTCATTCCCATGCCTATCCTCGCTGACGATTAA-GCCCAT 59
Query 129 AGCAGCTCTCACCAATTCCCCTAGAAC-AACGATTCCATAC-AACCTGAAAAAGGGGCAA 186
||||||||||||||| |||| ||||| || | ||||||| || |||||||||||||||
Sbjct 60 GGCAGCTCTCACCAATCCCCCAAGAACGAA-AACTCCATACGAA-CTGAAAAAGGGGCAA 117
Query 187 ACCCGCCTTTTGCACAAGCTTCCCTCTGGTCTAAAAATGGAGGTAATCGAGCAGA-GAA- 244
| ||| || || |||||||||||||||||||||||||||||||||||||| || | |||
Sbjct 118 AACCGTCTCTTCCACAAGCTTCCCTCTGGTCTAAAAATGGAGGTAATCGAACA-ACGAAG 176
Query 245 AATCCAAATCCGAAAGAGAGAATCCACCATTGGTGTTTGTACATGGAAGCTATCACGCAG 304
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 177 AA-GCAAATCCGAAAGAGAGAATCCACCATTGGTGTTTGTACATGGAAGCTATCACGCAG 235
Query 305 CTTGGTGTTGGGCTGAAAATTGGTTACCTTTCTTCTCTTCTTCTGGGTTTGATTCTTATG 364
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 236 CTTGGTGTTGGGCTGAACATTGGTTACCTTTCTTCTCTTCTTCTGGGTTTGATTCTTATG 295
Query 365 CTGTTAGTTTATTAGGTCAGGGTGAAAGTGATGAACCTTTGGGAACAGTTGCTGGAACAC 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 296 CTGTTAGTTTATTAGGTCAGGGTGAAAGTGATGAACCTTTGGGAACAGTTGCTGGAACAC 355
Query 425 TTCAG 429
|||||
Sbjct 356 TTCAG 360
> Ahg356160 jgi|Araly1|356160|fgenesh1_pg.C_scaffold_7003333
Length=645
Score = 459 bits (248), Expect = 3e-128
Identities = 319/352 (91%), Gaps = 9/352 (3%)
Strand=Plus/Plus
Query 681 GGTTACTCTCAGTTTAGCTGCTAAAGGTTTTCAGAAATCTATTCCTCTTTGTCGAGAAAC 740
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 270 GGTTACTCTTAGTTTAGCTGCTAAAGGTTTTCAGAAATCTATTCCTCTTTGTCGAGAAAC 329
Query 741 ATTCTTCTCTCAAGCCATGGATGATCAACTTGTGAA--G----C-GGATCTTATGAGTGA 793
||||||||||||||| |||||||||||||||||||| | | ||||||||||| ||
Sbjct 330 ATTCTTCTCTCAAGCTATGGATGATCAACTTGTGAAGCGTTACCAGGATCTTATGACAGA 389
Query 794 GAGTTCACGAATACCGTTGTTTGATTTGAGAAAGCTAAACGCATCACTTCCAGTACCAAA 853
||||||||| || ||| |||||||| |||| ||||||| ||| |||||||| ||||||||
Sbjct 390 GAGTTCACGGATGCCGCTGTTTGATCTGAGGAAGCTAAGCGCCTCACTTCCGGTACCAAA 449
Query 854 ACCAATGGAGAATTCGACCAAGGTTCTTGTTTTAGGTGCCAAAGATGACTTCATAGTGGA 913
|||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 450 ACCAATGGAGAATTCGACAAAAGTTCTTGTTTTAGGTGCCAAAGATGACTTCATAGTGGA 509
Query 914 CGATGAAGGACTGAAGGAAACCGGGAGGTTTTAT-GAGGTTGAACCGGTTTGTATTAAAG 972
||||| || ||||||||||||||| |||||||| | | | ||||||||||||||| |||
Sbjct 510 TGATGAGGGGCTGAAGGAAACCGGGTGGTTTTATTGTG-TCGAACCGGTTTGTATTGAAG 568
Query 973 GTGTTGCTCATGACATGATGCTTGATTGTTCATGGGAGAAAGGTGCTAAGGT 1024
|||||||||||||||||||||| |||||||||||| ||||||||||| ||||
Sbjct 569 GTGTTGCTCATGACATGATGCTAGATTGTTCATGGAAGAAAGGTGCTGAGGT 620
Score = 339 bits (183), Expect = 4e-92
Identities = 201/209 (96%), Gaps = 4/209 (2%)
Strand=Plus/Plus
Query 223 ATGGAGGTAATCGAGCAGA-GAA-AATCCAAATCCGAAAGAGAGAATCCACCATTGGTGT 280
|||||||||||||| || | ||| || ||||||||||||||||||||||||||||||||
Sbjct 1 ATGGAGGTAATCGAACA-ACGAAGAA-GCAAATCCGAAAGAGAGAATCCACCATTGGTGT 58
Query 281 TTGTACATGGAAGCTATCACGCAGCTTGGTGTTGGGCTGAAAATTGGTTACCTTTCTTCT 340
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 59 TTGTACATGGAAGCTATCACGCAGCTTGGTGTTGGGCTGAACATTGGTTACCTTTCTTCT 118
Query 341 CTTCTTCTGGGTTTGATTCTTATGCTGTTAGTTTATTAGGTCAGGGTGAAAGTGATGAAC 400
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 119 CTTCTTCTGGGTTTGATTCTTATGCTGTTAGTTTACTAGGTCAGGGTGAAAGTGATGAAC 178
Query 401 CTTTGGGAACAGTTGCTGGAACACTTCAG 429
|||||||||||||||||||||||||||||
Sbjct 179 CTTTGGGAACAGTTGCTGGAACACTTCAG 207
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47920506669
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5