BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G38380.1
Length=1512
Score E
Sequences producing significant alignments: (Bits) Value
Ahg891920 jgi|Araly1|891920|Al_scaffold_0007_3906 1742 0.0
> Ahg891920 jgi|Araly1|891920|Al_scaffold_0007_3906
Length=1089
Score = 1742 bits (943), Expect = 0.0
Identities = 1044/1092 (96%), Gaps = 9/1092 (1%)
Strand=Plus/Plus
Query 217 ATGATGTCGCCGAAGCAAATCTCCGACGATCGAGGATCTTCACATTTCAGGCATACACCA 276
|||||||||||||| |||||||||||||||||||||||||||||||||||| |||| ||
Sbjct 1 ATGATGTCGCCGAAACAAATCTCCGACGATCGAGGATCTTCACATTTCAGGAATACTCCT 60
Query 277 TTCCAGATAATCCACCTTATTGGGAACTTTTTTAGGATATGGTCAGTATATTCGATGTAC 336
||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 61 TTCCAGATAATCCACCTTATTGGGAACTTTTTTAGGATATGGTCAGTTTATTCTATGTAC 120
Query 337 CGATACTTGAATCAGACGGGAGCGCCTGTTGTTCTCTTTCTCTTCTGCTGTCTGGTGCCT 396
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 121 CGATACTTGAATCAGACGGGAGCGCCTGTTGTTCTCTTTCTCTTCTGCTGTTTGGTGCCT 180
Query 397 TCATCAATCATCTTCTTGATAATTCAAAAGCCATGGAAAGGAAGGGCTCTTTCTAATCAA 456
||||| ||||||||||||||| ||||||| ||||||||||||||||| ||||||||||||
Sbjct 181 TCATCTATCATCTTCTTGATACTTCAAAAACCATGGAAAGGAAGGGCACTTTCTAATCAA 240
Query 457 CAGATTGTACCTTCTCTTATCAATGGAGTCATCACGGCTCTATACTTCATCTTATGGGGA 516
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 241 CAGATTGTACCTTCTCTTATCAATGGAGTCATCACAGCTCTATACTTCATCTTATGGGGA 300
Query 517 AAAGGTCTCAAGTCTTGTGGACCTCTTAGAGCTATCTTGTCAGAGTATTCTGGTGCTGTT 576
|||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 301 AAAGGTCTCAAGTCTTGTGGACCTCTTAGAGCTATCTTATCAGAGTACTCTGGTGCTGTT 360
Query 577 CTTGGAGTACTTTCTGGAGTATTATATGGACGGAGAGGCCATGTGTGGAAAAAGGTAGGT 636
||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct 361 CTTGGAGTACTTTCTGGAGTATTGTATGGACGGAGAGGTCATGTGTGGAAAAAGGTAGGT 420
Query 637 GGCCTCATTGCAATGCTGGTAGCTCtttttttCTTGTCTCAAGGATGGGCGACATCATCT 696
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 GGCCTCATTGCAATGTTGGTAGCTCTTTTTTTCTTGTCTCAAGGATGGGCGACATCATCT 480
Query 697 CTCTCCCCTTTTTCA-A--C--AAAAGATAGTACTGAAACCAAAGAGGAAGAAGTACAAA 751
||||||||||||| | | | | | | |||||||||||||||||||||||||||||
Sbjct 481 CTCTCCCCTTTTT-ATATCCTTTTACG-CAATACTGAAACCAAAGAGGAAGAAGTACAAA 538
Query 752 CAGAACAAGCACTAGGTATGATGGGAATGATGATACCAGTTTTTGCTGGAATCTTATCAG 811
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 539 CAGAACAGGCACTAGGTATGATGGGAATGATGATACCAGTTTTTGCTGGAATCTTATCAG 598
Query 812 CATTAAGGCGGGTTATCGCACGCCGTGTTTCTCTAAAGAACCAGCAGAAGAAACGACTAC 871
| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 599 CGTTAAGGCGGGTTATCGCGCGCCGTGTTTCTCTAAAGAACCAGCAGAAGAAACGACTGC 658
Query 872 ATGCGATAACCATTACTTCTGCAACCTGTTTCTTGTTCCCTGTGGCCATGTGGGACCTTA 931
||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct 659 ATGCGATAACCATTACTTCTGCAACCTGTTTCTTGTTTCCTGTGGCTATGTGGGACCTTA 718
Query 932 TCATAGGGTCATCTTCTGGGAAAACATCCGAGTTACCATTTTCTGCGTGGGCTTTCCTTA 991
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 719 TCATAGGGTCATCTTCTGGGAAAACATCCGAGTTGCCATTTTCTGCGTGGGCTTTCCTTA 778
Query 992 GCACCATTATTTTCGGGATCATCCTAATATTCTACGTTGATAATATCGCAGAAGAGAGAT 1051
|||||||| ||||||| ||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 779 GCACCATTGTTTTCGGAATCATCCTAATATTCTATGTTGACAATATCGCAGAAGAGAGAT 838
Query 1052 TGCATATGGTGTTTTCTTCGCCGAGGCATTTAATGGTAGCAGGTG-TATGCATAATAGTC 1110
||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||
Sbjct 839 TGCATATGGTGTTTTCTTCGCCGAGGCATTTAATGGTAGCAGGTGCT-TGCATAATAGTC 897
Query 1111 ATGGAGTTAGCTTATGAGATGGATTTTTCTCTTCCCGGTTTCATCGTTTGTTGCTTAGTA 1170
|||||||||||||| |||||||||||||||||| ||||||||||||| ||||||||||||
Sbjct 898 ATGGAGTTAGCTTACGAGATGGATTTTTCTCTTGCCGGTTTCATCGTCTGTTGCTTAGTA 957
Query 1171 TTAGGGTTTGGAATATTCGAGGCAACATCTCTAGAACGGAACAAGAAAGACTCTTCGTTG 1230
|||||||||||||||||||||||||||||||| ||||| | |||||||||||||||||||
Sbjct 958 TTAGGGTTTGGAATATTCGAGGCAACATCTCTCGAACGTAGCAAGAAAGACTCTTCGTTG 1017
Query 1231 AAATCAGAAGATCCATCAAACGGAATCCTTGGTAATAATGACTTTGATACTTCTCCAATT 1290
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1018 AAATCAGAAGATCCATCAAACGGAATCCTTGGTAATAATGACTTTGATACTTCTCCAATT 1077
Query 1291 CTTCCCATATAG 1302
||||||||||||
Sbjct 1078 CTTCCCATATAG 1089
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56602104070
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5