BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G38400.1 Length=456 Score E Sequences producing significant alignments: (Bits) Value Ahg891912 jgi|Araly1|891912|Al_scaffold_0007_3898 573 4e-163 > Ahg891912 jgi|Araly1|891912|Al_scaffold_0007_3898 Length=459 Score = 573 bits (310), Expect = 4e-163 Identities = 416/465 (89%), Gaps = 15/465 (3%) Strand=Plus/Plus Query 1 ATGCACGTGGATTCTATGAAGAGAGCTCGTGTAAGCGCGGTGTATGAAGGTAAAGAGAGA 60 |||||||||||||||||||||||||||||||||||| |||||||||||||||||||| || Sbjct 1 ATGCACGTGGATTCTATGAAGAGAGCTCGTGTAAGCTCGGTGTATGAAGGTAAAGAGGGA 60 Query 61 AATAGATCAAGCAACGGAGAGGAAACTCGAAGGGAACAGTCTAAACACGCGAGAATGACG 120 |||||||| || || ||||||||||||||||| || || |||||||||||||||||||| Sbjct 61 AATAGATCGAGAAAAGGAGAGGAAACTCGAAGAGATCAATCTAAACACGCGAGAATGACC 120 Query 121 GCAAAAGCTCGGATGAACGTTTACAAAGAGAGCATGAAACCTCTGCCGCCTAAACGTAAG 180 || |||||||| ||||||||| ||||||||||||||||| | | | |||||||| ||| Sbjct 121 GCGAAAGCTCGAATGAACGTTCACAAAGAGAGCATGAAA--TAT-CTGCCTAAACATAAA 177 Query 181 AAATCGTTGATGATCAT-AAGTTTGATGAGAAAGAAGGAAGATACGCAAGATGATCAAAA 239 |||||| |||||||||| ||| ||||||||||||||||| || | |||| ||||||||| Sbjct 178 AAATCGATGATGATCATGAAG-TTGATGAGAAAGAAGGATGAGATGCAAAATGATCAAAG 236 Query 240 TAATGTTA---C---TGTTGTCGAAAAGGAAAAGGAGGAGAAAGAGAAAGGCACGGTGCA 293 |||||||| | |||||| |||||||||||||||||||||||||||||| ||||| | Sbjct 237 TAATGTTATTGCTAGTGTTGTAGAAAAGGAAAAGGAGGAGAAAGAGAAAGGCGCGGTGGA 296 Query 294 GAACATCAGGGAAAATG-CGGAAATGCTCTCAT-CAAAATGTGTTGAGGAGTGGCCGCAC 351 ||| |||| |||||| | |||||||||||| | ||||||||||||||||||||||| | Sbjct 297 GAATATCAAGGAAAA-GATGGAAATGCTCTC-TACAAAATGTGTTGAGGAGTGGCCGTAT 354 Query 352 ATGTTAACATATGAAGAGGAATGGACGTGGTTTGCGTTTGCGTTTGGGTGGGGATGGTGG 411 | |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 355 AAGTTAACATATGAAGAGGAATGGACGTGGTTTGCGTTTGCGTTTGGGTGGGAATGGTGG 414 Query 412 CAGCGTTATGACGCGGTGATGAGCGGTAAGAGTTGGTTTAACTAA 456 ||||||||||||||||| ||||||||| ||||||||||||||||| Sbjct 415 CAGCGTTATGACGCGGTCATGAGCGGTGAGAGTTGGTTTAACTAA 459 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 16483214448 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5