BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G38400.1

Length=456
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg891912 jgi|Araly1|891912|Al_scaffold_0007_3898                    573    4e-163


> Ahg891912 jgi|Araly1|891912|Al_scaffold_0007_3898
Length=459

 Score =  573 bits (310),  Expect = 4e-163
 Identities = 416/465 (89%), Gaps = 15/465 (3%)
 Strand=Plus/Plus

Query  1    ATGCACGTGGATTCTATGAAGAGAGCTCGTGTAAGCGCGGTGTATGAAGGTAAAGAGAGA  60
            |||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct  1    ATGCACGTGGATTCTATGAAGAGAGCTCGTGTAAGCTCGGTGTATGAAGGTAAAGAGGGA  60

Query  61   AATAGATCAAGCAACGGAGAGGAAACTCGAAGGGAACAGTCTAAACACGCGAGAATGACG  120
            |||||||| || || ||||||||||||||||| || || |||||||||||||||||||| 
Sbjct  61   AATAGATCGAGAAAAGGAGAGGAAACTCGAAGAGATCAATCTAAACACGCGAGAATGACC  120

Query  121  GCAAAAGCTCGGATGAACGTTTACAAAGAGAGCATGAAACCTCTGCCGCCTAAACGTAAG  180
            || |||||||| ||||||||| |||||||||||||||||  | | | |||||||| ||| 
Sbjct  121  GCGAAAGCTCGAATGAACGTTCACAAAGAGAGCATGAAA--TAT-CTGCCTAAACATAAA  177

Query  181  AAATCGTTGATGATCAT-AAGTTTGATGAGAAAGAAGGAAGATACGCAAGATGATCAAAA  239
            |||||| |||||||||| ||| ||||||||||||||||| || | |||| ||||||||| 
Sbjct  178  AAATCGATGATGATCATGAAG-TTGATGAGAAAGAAGGATGAGATGCAAAATGATCAAAG  236

Query  240  TAATGTTA---C---TGTTGTCGAAAAGGAAAAGGAGGAGAAAGAGAAAGGCACGGTGCA  293
            ||||||||   |   |||||| |||||||||||||||||||||||||||||| ||||| |
Sbjct  237  TAATGTTATTGCTAGTGTTGTAGAAAAGGAAAAGGAGGAGAAAGAGAAAGGCGCGGTGGA  296

Query  294  GAACATCAGGGAAAATG-CGGAAATGCTCTCAT-CAAAATGTGTTGAGGAGTGGCCGCAC  351
            ||| |||| |||||| |  |||||||||||| | ||||||||||||||||||||||| | 
Sbjct  297  GAATATCAAGGAAAA-GATGGAAATGCTCTC-TACAAAATGTGTTGAGGAGTGGCCGTAT  354

Query  352  ATGTTAACATATGAAGAGGAATGGACGTGGTTTGCGTTTGCGTTTGGGTGGGGATGGTGG  411
            | |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct  355  AAGTTAACATATGAAGAGGAATGGACGTGGTTTGCGTTTGCGTTTGGGTGGGAATGGTGG  414

Query  412  CAGCGTTATGACGCGGTGATGAGCGGTAAGAGTTGGTTTAACTAA  456
            ||||||||||||||||| ||||||||| |||||||||||||||||
Sbjct  415  CAGCGTTATGACGCGGTCATGAGCGGTGAGAGTTGGTTTAACTAA  459



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 16483214448


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5