BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G38410.3
Length=999
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494137 jgi|Araly1|494137|fgenesh2_kg.7__3570__AT5G38410.1 1147 0.0
Ahg494136 jgi|Araly1|494136|fgenesh2_kg.7__3569__AT5G38430.1 817 0.0
Ahg475805 jgi|Araly1|475805|fgenesh2_kg.2__935__AT1G67090.1 664 0.0
> Ahg494137 jgi|Araly1|494137|fgenesh2_kg.7__3570__AT5G38410.1
Length=787
Score = 1147 bits (621), Expect = 0.0
Identities = 749/807 (93%), Gaps = 24/807 (3%)
Strand=Plus/Plus
Query 20 GGTTCTCATTATATAAAGATGA-CAACACCAGTAGGA-AAACAAGTCAGTAAGT-AAACG 76
|||||||| ||||||||||||| ||| |||| || || |||||||| ||||||| ||| |
Sbjct 1 GGTTCTCACTATATAAAGATGACCAA-ACCAATA-GACAAACAAGTAAGTAAGTGAAAAG 58
Query 77 AGCAAAAGAAGAAGAGAAACAACAAGAAGTAGTAATGGCTTCCTCTATGCTCTCCTCCGC 136
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||
Sbjct 59 AGCAAAAGAAGAAGAGAAACAACAAGAAGAAGTAATGGCTTCCTCTATGCTCTCCTCGGC 118
Query 137 CGCTGTGGTTACATCCCCGGCTCAGGCCACCATGGTCGCTCCATTCACCGGCTTGAAGTC 196
|||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 119 CGCTGTGGTTACCTCCCCGGCTCAAGCCACCATGGTCGCTCCATTCACCGGCTTGAAGTC 178
Query 197 ATCCGCTGCATTCCCGGTCACCCGCAAGACCAACAAGGACATCACTTCCATCGCAAGCAA 256
||||||||| |||||||||||||||||| ||||||| ||||| |||||||||||||||||
Sbjct 179 ATCCGCTGCTTTCCCGGTCACCCGCAAGGCCAACAACGACATTACTTCCATCGCAAGCAA 238
Query 257 CGGGGGAAGAGTTAGCTGCATGAAGGTGTGGCCACCAATTGGAAAGAAGAAGTTTGAGAC 316
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 239 CGGGGGAAGAGTTAGCTGCATGAAGGTGTGGCCACCAATCGGAAAGAAGAAGTTTGAGAC 298
Query 317 TCTATCTTACCTCCCTGACCTTAGTGACGTCGAATTGGCTAAGGAAGTTGACTACCTTCT 376
| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 299 TTTATCTTACCTCCCTGACCTTACTGACGTCGAATTGGCTAAGGAAGTTGACTACCTTCT 358
Query 377 CCGCAACAAGTGGATTCCTTGTGTTGAATTCGAGTTAGAGGTAATAAACACAAAACACGG 436
|||||||||||||||||||||||||||||||||||||||| ||| ||
Sbjct 359 CCGCAACAAGTGGATTCCTTGTGTTGAATTCGAGTTAGAG--------CAC-------GG 403
Query 437 ATTTGTGTACCGTGAGCACGGAAACACTCCCGGATACTACGATGGACGGTACTGGACAAT 496
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 404 ATTTGTGTACCGTGAACACGGAAACACTCCCGGATACTACGATGGACGGTACTGGACAAT 463
Query 497 GTGGAAGCTTCCATTGTTCGGATGCACCGACTCCGCTCAAGTGTTGAAGGAAGTTG-AAG 555
|||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct 464 GTGGAAGCTTCCATTGTTCGGATGCACCGACTCCGCTCAAGTGTTGAAGGAAGT-GCAAG 522
Query 556 AATGCAAGAAGGAGTACCCGGGCGCCTTCATTAGGATCATCGGATTCGACAACACCCGTC 615
||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||
Sbjct 523 AATGCAAGAAGGAGTACCCTAATGCCTTCATTAGGATCATCGGATTCGACAACAACCGTC 582
Query 616 AAGTCCAATGCATCAGTTTCATTGCCTACAAGCCCCCAAGCTTCACCGAAGCTTAATTTC 675
|||||||||||||||||||||| |||||||||||||||||||||||||| |||||||| |
Sbjct 583 AAGTCCAATGCATCAGTTTCATCGCCTACAAGCCCCCAAGCTTCACCGATGCTTAATTCC 642
Query 676 TTTTCTAAAACATTCTTATGAATTATCTCTGCTCATTTCATTTCCTATTGTCTGTGTTCT 735
|||||||||||||| ||| |||||||||| ||||||||||| ||||||||||||||| |
Sbjct 643 CTTTCTAAAACATTCATATAAATTATCTCTACTCATTTCATT-CCTATTGTCTGTGTTGT 701
Query 736 TTTTCTCTTTATGAGACAATTTCTATCGGATTGTCAAATGTCTGATTTATGAATATGTAA 795
||| |||||||||||||| ||| ||||||||||||||||||||||||||||||||||||
Sbjct 702 TTT-CTCTTTATGAGACATTTTATATCGGATTGTCAAATGTCTGATTTATGAATATGTAT 760
Query 796 TTTATATATCCGTGCGTCTTGATTTTT 822
||||||||| | |||||||||||||||
Sbjct 761 TTTATATATTCTTGCGTCTTGATTTTT 787
> Ahg494136 jgi|Araly1|494136|fgenesh2_kg.7__3569__AT5G38430.1
Length=596
Score = 817 bits (442), Expect = 0.0
Identities = 541/586 (92%), Gaps = 17/586 (3%)
Strand=Plus/Plus
Query 97 AACAAGAAGTAGTAATGGCTTCCTCTATGCTCTCCTCCGCCGCTGTGGTTACATCCCCGG 156
||||||| ||||| ||||||||||||||||||||||| |||||||||||||| ||||| |
Sbjct 4 AACAAGACGTAGTGATGGCTTCCTCTATGCTCTCCTCTGCCGCTGTGGTTACCTCCCCAG 63
Query 157 CTCAGGCCACCATGGTCGCTCCATTCACCGGCTTGAAGTCATCCGCTGCATTCCCGGTCA 216
|||| |||||||||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 64 CTCAAGCCACCATGGTCGCTCCATTCACCGGCTTGAAGTCATCCGCTGCTTTCCCCGTCA 123
Query 217 CCCGCAAGACCAACAAGGACATCACTTCCATCGCAAGCAACGGGGGAAGAGTTAGCTGCA 276
|||||||| | ||||| ||||| ||||| ||| ||||||| || ||||||||||||||||
Sbjct 124 CCCGCAAGGCTAACAACGACATTACTTCTATCTCAAGCAATGGCGGAAGAGTTAGCTGCA 183
Query 277 TGAAGGTGTGGCCACCAATTGGAAAGAAGAAGTTTGAGACTCTATCTTACCTCCCTGACC 336
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 184 TGAAGGTGTGGCCACCAATTGGAAAGAAGAAGTTTGAGACTCTATCTTACCTCCCTGACC 243
Query 337 TTAGTGACGTCGAATTGGCTAAGGAAGTTGACTACCTTCTCCGCAACAAGTGGATTCCTT 396
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 244 TTACTGACGTCGAATTGGCTAAGGAAGTTGACTACCTTCTCCGCAACAAGTGGATTCCTT 303
Query 397 GTGTTGAATTCGAGTTAGAGGTAATAAACACAAAACACGGATTTGTGTACCGTGAGCACG 456
|||||||||||||||||||| | | ||||||||||||||||||||||
Sbjct 304 GTGTTGAATTCGAGTTAGAGC-A-T-------------GGATTTGTGTACCGTGAGCACG 348
Query 457 GAAACACTCCCGGATACTACGATGGACGGTACTGGACAATGTGGAAGCTTCCATTGTTCG 516
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 349 GAAACACTCCCGGATACTACGATGGACGGTACTGGACAATGTGGAAGCTTCCATTGTTCG 408
Query 517 GATGCACCGACTCCGCTCAAGTGTTGAAGGAAGTTG-AAGAATGCAAGAAGGAGTACCCG 575
|||||||||| || |||||||||||||||||||| | ||||||||||||||||||||||
Sbjct 409 GATGCACCGATTCTGCTCAAGTGTTGAAGGAAGT-GCAAGAATGCAAGAAGGAGTACCCT 467
Query 576 GGCGCCTTCATTAGGATCATCGGATTCGACAACACCCGTCAAGTCCAATGCATCAGTTTC 635
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 468 AATGCCTTCATTAGGATCATCGGATTCGACAACAACCGTCAAGTCCAATGCATCAGTTTC 527
Query 636 ATTGCCTACAAGCCCCCAAGCTTCACCGAAGCTTAATTTCTTTTCT 681
||||||||||||||||||||||||||||| |||||||| | |||||
Sbjct 528 ATTGCCTACAAGCCCCCAAGCTTCACCGATGCTTAATTCCCTTTCT 573
> Ahg475805 jgi|Araly1|475805|fgenesh2_kg.2__935__AT1G67090.1
Length=993
Score = 664 bits (359), Expect = 0.0
Identities = 510/579 (88%), Gaps = 25/579 (4%)
Strand=Plus/Plus
Query 100 AAGAAGTAGTAATGGCTTCCTCTATGCTCTCCTCCGCCGCTGTGGTTACATCCCCGGCTC 159
|||||| | ||||||||||||||||||||| ||||| || ||||| | || |||||||
Sbjct 166 AAGAAG-AACAATGGCTTCCTCTATGCTCTCTTCCGCTACTATGGTTGCCTCTCCGGCTC 224
Query 160 AGGCCACCATGGTCGCTCCATTCACCGG-CTTGAAGTCATCCGCTGCATTCCCGGTCACC 218
||||||| ||||||||||| |||||||| ||| ||||| |||||||| ||||| | ||||
Sbjct 225 AGGCCACAATGGTCGCTCCTTTCACCGGACTT-AAGTCCTCCGCTGCCTTCCCAGCCACC 283
Query 219 CGCAAGACCAACAAGGACATCACTTCCATCGCAAGCAACGGGGGAAGAGTTAGCTGCATG 278
|||||| ||||||| ||||| ||||||||| |||||||||| |||||||||| |||||||
Sbjct 284 CGCAAGGCCAACAACGACATTACTTCCATCACAAGCAACGGCGGAAGAGTTAACTGCATG 343
Query 279 AAGGTGTGGCCACCAATTGGAAAGAAGAAGTTTGAGACTCTATCTTACCTCCCTGACCTT 338
|||| ||||| || |||||||||||||||||||||||||| |||||||| |||||||||
Sbjct 344 CAGGTATGGCCTCCCATTGGAAAGAAGAAGTTTGAGACTCTCTCTTACCTTCCTGACCTT 403
Query 339 AGTGACGT-CGAATTGGCTAAGGAAGTTGACTACCTTCTCCGCAACAAGTGGATTCCTTG 397
| || | |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 404 ACCGA-TTCCGAATTGGCTAAGGAAGTTGACTACCTTCTCCGCAACAAGTGGATTCCTTG 462
Query 398 TGTTGAATTCGAGTTAGAGGTAATAAACACAAAACACGGATTTGTGTACCGTGAGCACGG 457
||||||||||||||| ||| ||| |||||||||||||||||||||||
Sbjct 463 TGTTGAATTCGAGTTGGAG--------CAC-------GGATTTGTGTACCGTGAGCACGG 507
Query 458 AAACACTCCCGGATACTACGATGGACGGTACTGGACAATGTGGAAGCTTCCATTGTTCGG 517
||||| ||||||||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct 508 TAACACCCCCGGATACTATGATGGACGGTACTGGACAATGTGGAAGCTTCCCTTGTTCGG 567
Query 518 ATGCACCGACTCCGCTCAAGTGTTGAAGGAAGTTG-AAGAATGCAAGAAGGAGTACCCGG 576
|||||||||||||||||||||||||||||||| | |||| |||||||||||||||||
Sbjct 568 TTGCACCGACTCCGCTCAAGTGTTGAAGGAAGT-GCAAGAGTGCAAGAAGGAGTACCCTC 626
Query 577 GCGCCTTCATTAGGATCATCGGATTCGACAACACCCGTCAAGTCCAATGCATCAGTTTCA 636
||||||||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct 627 AAGCCTTCATTAGGATCATCGGATTCGACAACACCCGTCAAGTGCAGTGCATCAGTTTCA 686
Query 637 TTGCCTACAAGCCCCCAAGCTTCACCGAAGCTTAATTTC 675
||||||||||||| ||||||||||||| | ||||||||
Sbjct 687 TTGCCTACAAGCCACCAAGCTTCACCG--G-TTAATTTC 722
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37131721158
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5