BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G38430.1
Length=808
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494137 jgi|Araly1|494137|fgenesh2_kg.7__3570__AT5G38410.1 933 0.0
Ahg494136 jgi|Araly1|494136|fgenesh2_kg.7__3569__AT5G38430.1 913 0.0
Ahg475805 jgi|Araly1|475805|fgenesh2_kg.2__935__AT1G67090.1 726 0.0
> Ahg494137 jgi|Araly1|494137|fgenesh2_kg.7__3570__AT5G38410.1
Length=787
Score = 933 bits (505), Expect = 0.0
Identities = 554/578 (96%), Gaps = 2/578 (0%)
Strand=Plus/Plus
Query 19 aagaagaagTAATGGCTTCCTCTATGCTCTCCTCTGCCGCTGTGGTTACCTCCCCGGCTC 78
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 82 AAGAAGAAGTAATGGCTTCCTCTATGCTCTCCTCGGCCGCTGTGGTTACCTCCCCGGCTC 141
Query 79 AAGCCACCATGGTCGCTCCATTCACTGGTTTGAAGTCATCCGCTTCTTTCCCGGTCACCC 138
||||||||||||||||||||||||| || ||||||||||||||| |||||||||||||||
Sbjct 142 AAGCCACCATGGTCGCTCCATTCACCGGCTTGAAGTCATCCGCTGCTTTCCCGGTCACCC 201
Query 139 GCAAGGCCAACAACGACATTACTTCCATCACAAGCAATGGGGGAAGAGTTAGCTGCATGA 198
||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||
Sbjct 202 GCAAGGCCAACAACGACATTACTTCCATCGCAAGCAACGGGGGAAGAGTTAGCTGCATGA 261
Query 199 AGGTGTGGCCACCAATCGGAAAGAAGAAGTTTGAGACTCTATCTTACCTCCCTGACCTTA 258
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 262 AGGTGTGGCCACCAATCGGAAAGAAGAAGTTTGAGACTTTATCTTACCTCCCTGACCTTA 321
Query 259 CTGACGTCGAATTGGCTAAGGAAGTTGACTACCTTCTCCGCAACAAATGGATTCCTTGTG 318
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 322 CTGACGTCGAATTGGCTAAGGAAGTTGACTACCTTCTCCGCAACAAGTGGATTCCTTGTG 381
Query 319 TTGAATTCGAGTTGGAGCACGGATTTGTGTACCGTGAGCACGGAAACACTCCCGGATACT 378
||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 382 TTGAATTCGAGTTAGAGCACGGATTTGTGTACCGTGAACACGGAAACACTCCCGGATACT 441
Query 379 ACGATGGACGGTACTGGACAATGTGGAAGCTTCCATTGTTCGGATGCACCGACTCCGCTC 438
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 442 ACGATGGACGGTACTGGACAATGTGGAAGCTTCCATTGTTCGGATGCACCGACTCCGCTC 501
Query 439 AAGTGTTGAAGGAAGTTG-AAGAATGCAAGAAGGAGTACCCGGGCGCCTTCATTAGGATC 497
|||||||||||||||| | |||||||||||||||||||||| |||||||||||||||
Sbjct 502 AAGTGTTGAAGGAAGT-GCAAGAATGCAAGAAGGAGTACCCTAATGCCTTCATTAGGATC 560
Query 498 ATCGGATTCGACAACACCCGTCAAGTCCAATGCATCAGTTTCATTGCCTACAAGCCCCCA 557
|||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||
Sbjct 561 ATCGGATTCGACAACAACCGTCAAGTCCAATGCATCAGTTTCATCGCCTACAAGCCCCCA 620
Query 558 AGCTTCACTGATGCTTAAATCCTTTTCTGGAATATTCA 595
|||||||| ||||||||| ||| ||||| || |||||
Sbjct 621 AGCTTCACCGATGCTTAATTCCCTTTCTAAAACATTCA 658
> Ahg494136 jgi|Araly1|494136|fgenesh2_kg.7__3569__AT5G38430.1
Length=596
Score = 913 bits (494), Expect = 0.0
Identities = 561/594 (94%), Gaps = 2/594 (0%)
Strand=Plus/Plus
Query 13 aagaagaagaagaagTAATGGCTTCCTCTATGCTCTCCTCTGCCGCTGTGGTTACCTCCC 72
||||| |||| | ||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 AAGAACAAGACGTAGTGATGGCTTCCTCTATGCTCTCCTCTGCCGCTGTGGTTACCTCCC 60
Query 73 CGGCTCAAGCCACCATGGTCGCTCCATTCACTGGTTTGAAGTCATCCGCTTCTTTCCCGG 132
| ||||||||||||||||||||||||||||| || ||||||||||||||| ||||||| |
Sbjct 61 CAGCTCAAGCCACCATGGTCGCTCCATTCACCGGCTTGAAGTCATCCGCTGCTTTCCCCG 120
Query 133 TCACCCGCAAGGCCAACAACGACATTACTTCCATCACAAGCAATGGGGGAAGAGTTAGCT 192
||||||||||||| ||||||||||||||||| ||| |||||||||| |||||||||||||
Sbjct 121 TCACCCGCAAGGCTAACAACGACATTACTTCTATCTCAAGCAATGGCGGAAGAGTTAGCT 180
Query 193 GCATGAAGGTGTGGCCACCAATCGGAAAGAAGAAGTTTGAGACTCTATCTTACCTCCCTG 252
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 181 GCATGAAGGTGTGGCCACCAATTGGAAAGAAGAAGTTTGAGACTCTATCTTACCTCCCTG 240
Query 253 ACCTTACTGACGTCGAATTGGCTAAGGAAGTTGACTACCTTCTCCGCAACAAATGGATTC 312
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 241 ACCTTACTGACGTCGAATTGGCTAAGGAAGTTGACTACCTTCTCCGCAACAAGTGGATTC 300
Query 313 CTTGTGTTGAATTCGAGTTGGAGCACGGATTTGTGTACCGTGAGCACGGAAACACTCCCG 372
||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct 301 CTTGTGTTGAATTCGAGTTAGAGCATGGATTTGTGTACCGTGAGCACGGAAACACTCCCG 360
Query 373 GATACTACGATGGACGGTACTGGACAATGTGGAAGCTTCCATTGTTCGGATGCACCGACT 432
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 361 GATACTACGATGGACGGTACTGGACAATGTGGAAGCTTCCATTGTTCGGATGCACCGATT 420
Query 433 CCGCTCAAGTGTTGAAGGAAGTTG-AAGAATGCAAGAAGGAGTACCCGGGCGCCTTCATT 491
| |||||||||||||||||||| | |||||||||||||||||||||| |||||||||
Sbjct 421 CTGCTCAAGTGTTGAAGGAAGT-GCAAGAATGCAAGAAGGAGTACCCTAATGCCTTCATT 479
Query 492 AGGATCATCGGATTCGACAACACCCGTCAAGTCCAATGCATCAGTTTCATTGCCTACAAG 551
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 480 AGGATCATCGGATTCGACAACAACCGTCAAGTCCAATGCATCAGTTTCATTGCCTACAAG 539
Query 552 CCCCCAAGCTTCACTGATGCTTAAATCCTTTTCTGGAATATTCAATGTTGACTA 605
|||||||||||||| ||||||||| ||| ||||| |||| |||| ||||||||
Sbjct 540 CCCCCAAGCTTCACCGATGCTTAATTCCCTTTCTTGAATGTTCAGCGTTGACTA 593
> Ahg475805 jgi|Araly1|475805|fgenesh2_kg.2__935__AT1G67090.1
Length=993
Score = 726 bits (393), Expect = 0.0
Identities = 499/550 (91%), Gaps = 7/550 (1%)
Strand=Plus/Plus
Query 19 aagaagaagTAATGGCTTCCTCTATGCTCTCCTCTGCCGCTGTGGTTACCTCCCCGGCTC 78
|||||||| ||||||||||||||||||||| || || || ||||| |||| |||||||
Sbjct 166 AAGAAGAA-CAATGGCTTCCTCTATGCTCTCTTCCGCTACTATGGTTGCCTCTCCGGCTC 224
Query 79 AAGCCACCATGGTCGCTCCATTCACTGG-TTTGAAGTCATCCGCTTCTTTCCCGGTCACC 137
| ||||| ||||||||||| ||||| || || ||||| |||||| | ||||| | ||||
Sbjct 225 AGGCCACAATGGTCGCTCCTTTCACCGGACTT-AAGTCCTCCGCTGCCTTCCCAGCCACC 283
Query 138 CGCAAGGCCAACAACGACATTACTTCCATCACAAGCAATGGGGGAAGAGTTAGCTGCATG 197
|||||||||||||||||||||||||||||||||||||| || |||||||||| |||||||
Sbjct 284 CGCAAGGCCAACAACGACATTACTTCCATCACAAGCAACGGCGGAAGAGTTAACTGCATG 343
Query 198 AAGGTGTGGCCACCAATCGGAAAGAAGAAGTTTGAGACTCTATCTTACCTCCCTGACCTT 257
|||| ||||| || || ||||||||||||||||||||||| |||||||| |||||||||
Sbjct 344 CAGGTATGGCCTCCCATTGGAAAGAAGAAGTTTGAGACTCTCTCTTACCTTCCTGACCTT 403
Query 258 ACTGACGT-CGAATTGGCTAAGGAAGTTGACTACCTTCTCCGCAACAAATGGATTCCTTG 316
|| || | ||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 404 ACCGA-TTCCGAATTGGCTAAGGAAGTTGACTACCTTCTCCGCAACAAGTGGATTCCTTG 462
Query 317 TGTTGAATTCGAGTTGGAGCACGGATTTGTGTACCGTGAGCACGGAAACACTCCCGGATA 376
||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 463 TGTTGAATTCGAGTTGGAGCACGGATTTGTGTACCGTGAGCACGGTAACACCCCCGGATA 522
Query 377 CTACGATGGACGGTACTGGACAATGTGGAAGCTTCCATTGTTCGGATGCACCGACTCCGC 436
||| |||||||||||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 523 CTATGATGGACGGTACTGGACAATGTGGAAGCTTCCCTTGTTCGGTTGCACCGACTCCGC 582
Query 437 TCAAGTGTTGAAGGAAGTTG-AAGAATGCAAGAAGGAGTACCCGGGCGCCTTCATTAGGA 495
|||||||||||||||||| | |||| ||||||||||||||||| |||||||||||||
Sbjct 583 TCAAGTGTTGAAGGAAGT-GCAAGAGTGCAAGAAGGAGTACCCTCAAGCCTTCATTAGGA 641
Query 496 TCATCGGATTCGACAACACCCGTCAAGTCCAATGCATCAGTTTCATTGCCTACAAGCCCC 555
|||||||||||||||||||||||||||| || |||||||||||||||||||||||||| |
Sbjct 642 TCATCGGATTCGACAACACCCGTCAAGTGCAGTGCATCAGTTTCATTGCCTACAAGCCAC 701
Query 556 CAAGCTTCAC 565
||||||||||
Sbjct 702 CAAGCTTCAC 711
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29850244011
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5