BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G38435.1
Length=612
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494134 jgi|Araly1|494134|fgenesh2_kg.7__3567__AT5G38435.1 704 0.0
Ahg947997 jgi|Araly1|947997|scaffold_704226.1 431 3e-120
> Ahg494134 jgi|Araly1|494134|fgenesh2_kg.7__3567__AT5G38435.1
Length=468
Score = 704 bits (381), Expect = 0.0
Identities = 432/456 (95%), Gaps = 5/456 (1%)
Strand=Plus/Plus
Query 33 GCAATGCATAGTCTCTCGTGGTTTCTCCTCGTCATTGGATTATCCGTAGGGTTGAGTAGC 92
|||||||||||||||||||||||||| |||||||||||||| |||||||||||||||| |
Sbjct 1 GCAATGCATAGTCTCTCGTGGTTTCTGCTCGTCATTGGATTGTCCGTAGGGTTGAGTAAC 60
Query 93 GGAAAGTGGAATGAGAAAAACTCTGTCATCTTTACGAATTCTCTTGGTCGGAACAAAGTC 152
| ||||||||||||||||||| ||||| |||||| |||||||||||||||||||||||||
Sbjct 61 GCAAAGTGGAATGAGAAAAACGCTGTCTTCTTTAAGAATTCTCTTGGTCGGAACAAAGTC 120
Query 153 TTGAAAGTAAATTGCATATCAAATGATGACAATCTAGGCTTCCACTTTTTGCG-CCATGG 211
|||||||||||||||||||||||||| |||||||||||||||||||||||||| || |||
Sbjct 121 TTGAAAGTAAATTGCATATCAAATGACGACAATCTAGGCTTCCACTTTTTGCGTCC-TGG 179
Query 212 ACAAACCTACGATTTTAGTTTCCACGATAGTCTTTTCAAATCAGAATTCTATTGTGACCT 271
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 AGAAACCTACGATTTTAGTTTCCACGATAGTCTTTTCAAATCAGAATTCTATTGTGACCT 239
Query 272 ATGGCAAGGCCCTAATTTCAAGTTGCATGCAGCATTTACGGCATATGAAGGTGGTGGTTT 331
||||||||||||| ||||||||||||||||| |||||| |||||||||||||||||||||
Sbjct 240 ATGGCAAGGCCCTGATTTCAAGTTGCATGCATCATTTATGGCATATGAAGGTGGTGGTTT 299
Query 332 GATAGTTCATTATGGTAAAAAGAACTTTTGGGATGTTAGAGATGATGGGATCTATTTCAC 391
|||||||||||||||||||||||||||||||||| |||||| || ||||||||||||||
Sbjct 300 CATAGTTCATTATGGTAAAAAGAACTTTTGGGATGCTAGAGAAGACGGGATCTATTTCAC 359
Query 392 CCATGGCCAAAAAATGCCCAAGTTAGAGTATACGTGGAAGTAATAATTAATCACTCAAAG 451
|||||||||||||||||||||||||||||||| |||||| |||||||||| ||||||||
Sbjct 360 CCATGGCCAAAAAATGCCCAAGTTAGAGTATAAGTGGAAATAATAATTAACCACTCAAA- 418
Query 452 GGAAAAGATGGAATTTAACTCATCTTTTTGTTTTAA 487
||||||||||||||||||||||||||||||||||
Sbjct 419 --AAAAGATGGAATTTAACTCATCTTTTTGTTTTAA 452
> Ahg947997 jgi|Araly1|947997|scaffold_704226.1
Length=445
Score = 431 bits (233), Expect = 3e-120
Identities = 363/425 (85%), Gaps = 12/425 (3%)
Strand=Plus/Plus
Query 34 CAATGCATAGTCTCTCGTGGTTTCTCCTCGTCATTGGATTATCCGTAGGGTTGAGT-A-G 91
||||| || ||||||| || ||||| ||||| |||||||| | ||||| |||||| | |
Sbjct 19 CAATGAATCGTCTCTCTTGTTTTCTACTCGTTATTGGATTGTGTGTAGGATTGAGTAACG 78
Query 92 CGGA----AAGTGGAATGAGAAAAACTCTGTCAT-CTTTACGAATTCTCTTGGTCGGAAC 146
| || || |||||||||||||||||||| || ||| | || ||| |||||||| |||
Sbjct 79 CAGATTTCAAATGGAATGAGAAAAACTCTGT-ATACTTCAAGAGTTCCCTTGGTCGAAAC 137
Query 147 AAAGTCTTGAAAG-TAAATTGCATATCAAATGATGACAATCTAGGCTTCCACTTTTTGCG 205
|| |||||| ||| | |||||| |||||| || ||||||||||||||||| ||||||||
Sbjct 138 AATGTCTTG-AAGATTCATTGCACATCAAACGACGACAATCTAGGCTTCCATTTTTTGCG 196
Query 206 CCATGGACAAACCTACGATTTTAGTTTCCACGATAGTCTTTTCAAATCAGAATTCTATTG 265
|| |||||||||||| |||||||||||||| |||||| || | | ||||||||| | |||
Sbjct 197 CCCTGGACAAACCTATGATTTTAGTTTCCATGATAGTGTTGTGAGATCAGAATTTTTTTG 256
Query 266 TGACCTATGGCAAGGCCCTAATTTCAAGTTGCATGCAGCATTTACGGCATATGAAGGTGG 325
||| |||||||||| |||||||||||||| |||||| | |||| ||||||||||||| |
Sbjct 257 TGATTTATGGCAAGGGCCTAATTTCAAGTTTCATGCATCGTTTATGGCATATGAAGGTAG 316
Query 326 TGGTTTGATAGTTCATTATGGTAAAAAGAACTTTTGGGATGTTAGAGATGATGGGATCTA 385
|||| | |||||||||||||||||||||||||||||||||| |||||| ||||| |||||
Sbjct 317 TGGTCTCATAGTTCATTATGGTAAAAAGAACTTTTGGGATGCTAGAGAAGATGGAATCTA 376
Query 386 TTTCACCCATGGCCAAA-AAATGCCCAAGTTAGAGTATACGTGGAAGTAATAATTAATCA 444
|||||| |||||| ||| ||||||||||||||||||||| |||||| |||||||||| ||
Sbjct 377 TTTCACTCATGGC-AAAGAAATGCCCAAGTTAGAGTATAAGTGGAAATAATAATTAACCA 435
Query 445 CTCAA 449
|||||
Sbjct 436 CTCAA 440
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 22378152279
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5