BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G38440.1
Length=402
Score E
Sequences producing significant alignments: (Bits) Value
Ahg947997 jgi|Araly1|947997|scaffold_704226.1 595 7e-170
Ahg494134 jgi|Araly1|494134|fgenesh2_kg.7__3567__AT5G38435.1 429 7e-120
> Ahg947997 jgi|Araly1|947997|scaffold_704226.1
Length=445
Score = 595 bits (322), Expect = 7e-170
Identities = 379/406 (93%), Gaps = 5/406 (1%)
Strand=Plus/Plus
Query 1 ATGAATCGGCTCTCGTGTTTTCTGCTCGTTATTGGATTGTGCATAGGATTGAGTAACGCA 60
|||||||| ||||| |||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 21 ATGAATCGTCTCTCTTGTTTTCTACTCGTTATTGGATTGTGTGTAGGATTGAGTAACGCA 80
Query 61 AATTT-AATATGGAATGAGAAAAACACTGTATTCTTCAAGAGTTCCCTTGGTCGAAACAA 119
|||| || |||||||||||||||| |||||| |||||||||||||||||||||||||||
Sbjct 81 GATTTCAA-ATGGAATGAGAAAAACTCTGTATACTTCAAGAGTTCCCTTGGTCGAAACAA 139
Query 120 TGTTTTGAAGATTCATTGCACATC--A-GAAGACAATCTAGGTTTCCATTTTTTGCGTCC 176
||| |||||||||||||||||||| | || ||||||||||| |||||||||||||| ||
Sbjct 140 TGTCTTGAAGATTCATTGCACATCAAACGACGACAATCTAGGCTTCCATTTTTTGCGCCC 199
Query 177 TGGAGAAACCTATGATTTTAGTTTCCATGATAGTATTGTGAGATCAGACTTTTACTGTGA 236
|||| ||||||||||||||||||||||||||||| ||||||||||||| |||| |||||
Sbjct 200 TGGACAAACCTATGATTTTAGTTTCCATGATAGTGTTGTGAGATCAGAATTTTTTTGTGA 259
Query 237 ATTATGGCAAGGGCCTAATTTCAAGTTTCATGCATCATTTATGGCATATCAAGGTGGTGG 296
||||||||||||||||||||||||||||||||||| |||||||||||| ||||| ||||
Sbjct 260 TTTATGGCAAGGGCCTAATTTCAAGTTTCATGCATCGTTTATGGCATATGAAGGTAGTGG 319
Query 297 TCTCATAGTTCATTATGGTAAAAAGAACTTTTGGGATGCTAGAGAAGATGGAATCTATTT 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 320 TCTCATAGTTCATTATGGTAAAAAGAACTTTTGGGATGCTAGAGAAGATGGAATCTATTT 379
Query 357 CACTCATGGCAAAGAAACGCCCAAGTTAGAGTATAAGTGGAAATAA 402
||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 380 CACTCATGGCAAAGAAATGCCCAAGTTAGAGTATAAGTGGAAATAA 425
> Ahg494134 jgi|Araly1|494134|fgenesh2_kg.7__3567__AT5G38435.1
Length=468
Score = 429 bits (232), Expect = 7e-120
Identities = 345/398 (87%), Gaps = 13/398 (3%)
Strand=Plus/Plus
Query 10 CTCTCGTGTTTTCTGCTCGTTATTGGATTGTGCATAGGATTGAGTAACGCAAATTTAATA 69
|||||||| ||||||||||| |||||||||| | |||| ||||||||||| | ||
Sbjct 13 CTCTCGTGGTTTCTGCTCGTCATTGGATTGTCCGTAGGGTTGAGTAACGC--A---AA-G 66
Query 70 TGGAATGAGAAAAACACTGTATTCTTCAAGAGTTCCCTTGGTCGAAACAATGTTTTG-AA 128
||||||||||||||| |||| ||||| |||| ||| |||||||| ||||| || ||| ||
Sbjct 67 TGGAATGAGAAAAACGCTGTCTTCTTTAAGAATTCTCTTGGTCGGAACAAAGTCTTGAAA 126
Query 129 GATTCATTGCACATC--A-GAAGACAATCTAGGTTTCCATTTTTTGCGTCCTGGAGAAAC 185
| | |||||| ||| | || ||||||||||| ||||| ||||||||||||||||||||
Sbjct 127 G-TAAATTGCATATCAAATGACGACAATCTAGGCTTCCACTTTTTGCGTCCTGGAGAAAC 185
Query 186 CTATGATTTTAGTTTCCATGATAGTATTGTGAGATCAGACTTTTACTGTGAATTATGGCA 245
||| |||||||||||||| |||||| || | | |||||| || || ||||| |||||||
Sbjct 186 CTACGATTTTAGTTTCCACGATAGTCTTTTCAAATCAGAATTCTATTGTGACCTATGGCA 245
Query 246 AGGGCCTAATTTCAAGTTTCATGCATCATTTATGGCATATCAAGGTGGTGGTCTCATAGT 305
||| ||| |||||||||| ||||||||||||||||||||| ||||||||||| |||||||
Sbjct 246 AGGCCCTGATTTCAAGTTGCATGCATCATTTATGGCATATGAAGGTGGTGGTTTCATAGT 305
Query 306 TCATTATGGTAAAAAGAACTTTTGGGATGCTAGAGAAGATGGAATCTATTTCACTCATGG 365
||||||||||||||||||||||||||||||||||||||| || ||||||||||| |||||
Sbjct 306 TCATTATGGTAAAAAGAACTTTTGGGATGCTAGAGAAGACGGGATCTATTTCACCCATGG 365
Query 366 C-AAAGAAACGCCCAAGTTAGAGTATAAGTGGAAATAA 402
| ||| ||| ||||||||||||||||||||||||||||
Sbjct 366 CCAAA-AAATGCCCAAGTTAGAGTATAAGTGGAAATAA 402
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 14422812642
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5