BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G38450.1
Length=1849
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494132 jgi|Araly1|494132|fgenesh2_kg.7__3565__AT5G38450.1 2532 0.0
Ahg475808 jgi|Araly1|475808|fgenesh2_kg.2__938__AT1G67110.1 939 0.0
> Ahg494132 jgi|Araly1|494132|fgenesh2_kg.7__3565__AT5G38450.1
Length=1703
Score = 2532 bits (1371), Expect = 0.0
Identities = 1529/1606 (95%), Gaps = 7/1606 (0%)
Strand=Plus/Plus
Query 6 CGAATCTTTGTTGCTGGAAGAAGaaaagaaaaaacccaaaaaTGTTGCTTACTATATTAA 65
||||||||||||||||| | | |||| ||||| ||||||||||||||||| |||||||
Sbjct 1 CGAATCTTTGTTGCTGG-A-CA-AAAA-CAAAAA-CCAAAAATGTTGCTTACAATATTAA 55
Query 66 AATCACTCCTCGTGATATTCGTGACTACGATATTGAGAGTTTTATACGACACCATATCGT 125
||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||
Sbjct 56 AATCACTCCTCGTGATATTCGTGACCATGATATTGAGAGTTTTATACGACACCATATCGT 115
Query 126 GCTACTGGCTAACACCTAGACGAATCAAGAAGATCATGGAACAGCAAGGCGTAACGGGTC 185
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 116 GCTACTGGCTAACACCTAGACGAATCAAGAAGATCATGGAACGGCAAGGCGTAACGGGTC 175
Query 186 CTAAACCGCGTCCGTTAACCGGAAATATCCTTGAAATCTCGGCCATGGTTTCGCAATCCG 245
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 176 CTAAACCGCGTCCGTTAACCGGAAATATCCTTGAAATCTCGGCCATGGTTTCGCAATCCG 235
Query 246 CTTCCAAGGATTGTGACTCTATTCACCATGACATCGTCGGCCGCCTTCTCCCGCATTACG 305
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 236 CTTCCAAGGATTGTGACTCTATTCACCATGACATCGTCGGTCGCCTTCTCCCGCATTACG 295
Query 306 TTGCTTGGTCCAAACAATACGGGAAGAGGTTTATTGTGTGGAACGGGACGGATCCTCGGC 365
|| ||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 296 TTTCTTGGTCAAAACAATACGGGAAGAGATTTATTGTGTGGAACGGGACGGATCCTCGGC 355
Query 366 TTTGCTTAACGGAAACGGAATTGATAAAGGAGTTGCTGATGAAACACAACGGTGTTAGTG 425
||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 356 TTTGCTTAACGGAAACGGAATTGATAAAGGAGTTGCTAATGAAACACAACGGTGTAAGTG 415
Query 426 GAAGATCGTGGCTACAACAACAAGGGACTAAGAATTTTATCGGTCGCGGTCTCCTAATGG 485
|||||||||||||||||||||||||||||||||| |||||||| ||||||||||| ||||
Sbjct 416 GAAGATCGTGGCTACAACAACAAGGGACTAAGAACTTTATCGGCCGCGGTCTCCTTATGG 475
Query 486 CTAATGGCCAAGATTGGCACCACCAACGCCACCTTGCTGCACCGGCATTTACCGGAGAAA 545
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 476 CTAATGGCCAAGATTGGCACCACCAACGCCACCTTGCTGCACCGGCATTTACCGGAGAAA 535
Query 546 GACTCAAGGGATACGCAAGGCATATGGTGGAGTGCACAAGCAAGCTAGTTGAGAGGTTGA 605
||||||||||||||||| |||| |||||||||||||||||||||||||| |||||| |||
Sbjct 536 GACTCAAGGGATACGCACGGCACATGGTGGAGTGCACAAGCAAGCTAGTGGAGAGGCTGA 595
Query 606 GGAAGGAAGTTGGGGAAGGAGCAAATGAGGTGGAGATAGGAGAGGAGATGCATAAACTCA 665
||||||||||||||||||||| | |||| | ||||||||||| ||||||||||||||||
Sbjct 596 GGAAGGAAGTTGGGGAAGGAGGATGTGAGTTAGAGATAGGAGAAGAGATGCATAAACTCA 655
Query 666 CGGCTGATATTATATCGAGGACA-AAGTTCGGAAGCAGCTTTGAGAAAGGCAAAGAGCTT 724
| |||||||||||||||||||| || || ||||| ||||||||||||||||||||||||
Sbjct 656 CTGCTGATATTATATCGAGGACGGAATTT-GGAAGTAGCTTTGAGAAAGGCAAAGAGCTT 714
Query 725 TTCAACCACCTCACTGTCCTCCAGCGCCGTTGCGCTCAAGCCACCCGCCACCTCTGCTTT 784
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 715 TTTAACCACCTCACTGTCCTCCAGCGCCGTTGCGCTCAAGCCACCCGCCACCTCTGCTTT 774
Query 785 CCCGGCAGCCGGTTTCTTCCAAGCAAATACAACAGAGAGATCAAGTCTCTGAAAAAAGAA 844
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 775 CCCGGCAGCCGGTTTCTTCCAAGCAAATACAACAGAGAGATCAAGTCTCTGAAAAAGGAA 834
Query 845 GTTGAGCGTTTGTTGATTGAGATCATACAAAGCAGGCGAGACTGCGCTGAAATGGGTAGG 904
|| || ||||||||||||||||||||||||||| | |||||||||||||| |||||| |
Sbjct 835 GTGGAACGTTTGTTGATTGAGATCATACAAAGCCGCCGAGACTGCGCTGAGATGGGTCGA 894
Query 905 AGTAGCACTCACGGTGACGACCTTCTCGGGCTTCTCTTGAACGAAATGGATATTGACAAG 964
|| || ||||||||||||||||||||||||||||||||||| |||||||||| ||||||
Sbjct 895 AGCAGTACTCACGGTGACGACCTTCTCGGGCTTCTCTTGAATGAAATGGATAGCGACAAG 954
Query 965 AACAATAACAATAACAACAACAATCTTCAGTTGATAATGGATGAATGCAAGACATTCTTC 1024
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 955 AACAATAACAATAACAACAACAATCTTCAGTTGATAATGGATGAATGCAAGACATTCTTC 1014
Query 1025 TTTGCTGGCCATGAAACCACGGCTTTGCTCCTCACATGGACAACAATGCTCCTCGCCGAT 1084
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1015 TTTGCTGGCCATGAAACCACGGCTTTGCTCCTCACATGGACAATGATGCTCCTCGCCGAT 1074
Query 1085 AATCCCACATGGCAGGAAAAAGTCCGTGAGGAGGTCAGGGAGGTCTTTGGCCGCAATGGC 1144
|||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 1075 AATCCCACATGGCAGGAAAAGGTCCGTGAGGAGGTTAGGGAGGTCTTTGGCCGCAATGGC 1134
Query 1145 CTTCCCTCAGTCGATCAACTATCTAAGCTAACCTCGTTAAGCAAAGTGATTAACGAGTCA 1204
|||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1135 CTTCCCTCGGTCGATCAACTATCCAAGCTAACCTCGTTAAGCAAAGTGATTAACGAGTCA 1194
Query 1205 CTAAGACTTTACCCTCCAGCTACTCTTCTACCAAGGATGGCATTTGAAGATCTAAAACTA 1264
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1195 CTAAGACTTTACCCTCCAGCTACTCTTCTACCAAGGATGGCATTTGAAGATTTAAAACTA 1254
Query 1265 GGTGATCTAACCATTCCTAAAGGTTTATCAATATGGATACCGGTTCTTGCTATCCATCAC 1324
||||||||||| ||||| |||||| ||||||||||||||||||||||||| ||||||||
Sbjct 1255 GGTGATCTAACAATTCCCAAAGGTCTATCAATATGGATACCGGTTCTTGCGATCCATCAT 1314
Query 1325 AGTGAAGAATTATGGGGTAAAGACGCGAACCAATTCAATCCCGAACGTTTTGGAGGCAGA 1384
|||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct 1315 AGTGAAGAATTATGGGGTAAAGACGCAAACCAATTCAACCCCGAACGTTTTGGAGGCAGA 1374
Query 1385 CCATTCGCGTCTGGTCGCCATTTCATCCCATTTGCAGCCGGTCCACGGAACTGCATCGGA 1444
||||||||| ||||||| ||||| |||||||||||||| |||||||| ||||||||||||
Sbjct 1375 CCATTCGCGGCTGGTCGACATTTTATCCCATTTGCAGCTGGTCCACGAAACTGCATCGGA 1434
Query 1445 CAACAGTTTGCGTTGATGGAAGCTAAAATAATATTAGCCACGTTAATTTCAAAGTTTAAC 1504
||||| ||||||||||||||||| ||||||||| |||| ||| ||||||| |||||||||
Sbjct 1435 CAACAATTTGCGTTGATGGAAGCAAAAATAATACTAGCGACGCTAATTTCCAAGTTTAAC 1494
Query 1505 TTCACAATATCAAAGAATTATAGGCATGCCCCAATCGTTGTGCTTACTATAAAACCTAAG 1564
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1495 TTCACAATATCAAAGAATTATAGGCATGCCCCAATCGTTGTGCTTACTATAAAACCCAAG 1554
Query 1565 TATGGAGTTCAAGTGATATTGAAGCCATTGGTTTCATGAGGATTTT 1610
||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1555 TATGGAGTTCAAGTGATATTGAAGCCATTGGATTCATGAGGATTTT 1600
> Ahg475808 jgi|Araly1|475808|fgenesh2_kg.2__938__AT1G67110.1
Length=1732
Score = 939 bits (508), Expect = 0.0
Identities = 1227/1562 (79%), Gaps = 98/1562 (6%)
Strand=Plus/Plus
Query 72 TCCTCGTGATATTCGTGA-CTACGATATTGAGAGTTTTATACGACACCATATCG-TGCTA 129
||||||||||| || ||| || |||||||||||| |||||||| |||| | | |||||
Sbjct 118 TCCTCGTGATAGTCATGACCT-TGATATTGAGAGTCCTATACGACTCCAT-TTGTTGCTA 175
Query 130 CTGGCTAACACCTAGACGAATCAAGAAGATCATGGAACAG-CAAGGCGTAACGGGTCCTA 188
|| || ||||| ||||| ||||||||| | ||||||| | |||||| | || || ||||
Sbjct 176 CTTCCTCACACCAAGACGCATCAAGAAGTTTATGGAAC-GTCAAGGCATCACCGGCCCTA 234
Query 189 AACCGCGTC-CGTTAACCGGAAATATCCTTGAAATCTCGGCCATGGTTTCGCAATCCGCT 247
|||| |||| | || |||||||| ||| | || ||||| ||| | || |||||||||
Sbjct 235 AACCCCGTCTCCTT-ACCGGAAACATCATCGATATCTCCAAAATGCTCTCTCAATCCGCT 293
Query 248 TCCAAGGATTG-TGACTCTATTCACCATGACATCGTCGGC-CGCCTTCTCCCGCATTACG 305
|| || || || | ||| || |||||| |||||||| | |||||||| || ||||| |
Sbjct 294 TCTAACGACTGCT-CCTCCATCCACCATAACATCGTC-CCACGCCTTCTTCCTCATTATG 351
Query 306 T-TGCTTGGTCCAAACAATACGGGAAGAGGTTTATTGTGTGGAACGGGACGGATCCTCGG 364
| | |||||||||||||||| || ||||| ||||| |||||||||||||| || || ||
Sbjct 352 TCT-CTTGGTCCAAACAATATGGAAAGAGATTTATAGTGTGGAACGGGACAGAACCGAGG 410
Query 365 CTTTGCT-TAACGGAAACGGA-ATTGATAAAGGAGTTGCTGATGAAACACAA-CGGTGTT 421
|| || | ||||||| ||||| | |||| ||||| ||||| | ||| ||||| | | ||
Sbjct 411 CTATG-TCTAACGGAGACGGAGA-TGATTAAGGAATTGCTAACGAAGCACAATCCG-GTC 467
Query 422 AGTGGAAGATCGTGGCTACAACAACAAGGGACT-AAGAATTTTATCGGTCGCGGTCTCCT 480
| |||| ||||||||| ||||||||||| ||| ||| ||||| || || || |||||
Sbjct 468 ACCGGAAAATCGTGGCTGCAACAACAAGGAACTAAAG-GGTTTATAGGGCGGGGGCTCCT 526
Query 481 AATGGCTAATGGCCAAGATTGGCACCACCAACGCCACCTTGCTGCACCGGCATTTAC-CG 539
|||||||||||| | | ||||||||||||||||||| | || || ||||| || || |
Sbjct 527 CATGGCTAATGGCGAGGCTTGGCACCACCAACGCCACATGGCAGCTCCGGCGTTCACAC- 585
Query 540 GAGAAAGACTCAAGGGATACGC-AAGGCATATGGTGGAGTGCAC-AAGCAAGCTAGTTGA 597
| || || ||||| ||||| || || |||||||||||||||||| ||| | | | | |||
Sbjct 586 GTGATAGGCTCAAAGGATATGCGAA-GCATATGGTGGAGTGCACGAAG-ATGATGGCTGA 643
Query 598 GAGGTTGAGGAAGGAAGTTGGGGAAGGAGCAAATGAGGTGGAGATAGGAGAGGAGATGCA 657
|||| |||| ||||| ||| | || | || ||||||||||| |||||||||||||
Sbjct 644 GAGGCTGAGAAAGGAGGTT---G--GG-G--AA-GAGGTGGAGATCGGAGAGGAGATGCG 694
Query 658 TAAACTCACGGCTGATATTATATCGAGGACAAAGTTCGGAAGCAGCTT-TGAGAAAGGCA 716
|||||||| ||||| ||||||||||| |||| ||||| || || ||| ||||| |
Sbjct 695 GCGGCTCACGGCGGATATAATATCGAGGACGGAGTTTGGAAGTAG-TTGTGACAAAGG-A 752
Query 717 AA-GAGCTTTTCA-ACCACCTCACTGTCCTCCAGCGCCGT-TGCGCTCAAGCCACCCGCC 773
|| |||||||| | | | |||||||| || || || | | || ||||||||||| ||||
Sbjct 753 AAGGAGCTTTTTAGTCTA-CTCACTGTACTTCAACGTC-TATGTGCTCAAGCCACTCGCC 810
Query 774 ACCTCTGCTTTCCCGGCAGCCGGTTTCTTCCAAGCAAATACAACAGAGAGATCAAGTCTC 833
||||||| |||||||| ||||||||||| || ||||||||||| |||||||| |||||||
Sbjct 811 ACCTCTGTTTTCCCGGTAGCCGGTTTCTACCGAGCAAATACAATAGAGAGATAAAGTCTC 870
Query 834 TGAAAAAAGAAGTTGAGCGT-TTGTTGATTGAGATCATACAAAGCAGGCGAGACTGCGCT 892
| |||| ||||| || ||| || ||||| ||||| ||| | ||| | ||||| | | |
Sbjct 871 TTAAAACGGAAGTGGAACGTCTT-TTGATGGAGATTATAGAGAGCCGAAGAGACAGTG-T 928
Query 893 -GAAATGGGTAGGAGTAG--CACTCACGGTGACGACCTTC-TCGGGCTTCTCTTGAACGA 948
|| || ||| ||||||| | || | || || |||| || | |||||||| |||||| |
Sbjct 929 AGAGATCGGTCGGAGTAGTTC-CT-ATGGAGATGACC-TCTTAGGGCTTCTATTGAACCA 985
Query 949 AATGGATATTGACAAGAACAATAACAATAACAACAACAATCTTCAGTTGATAATGGATGA 1008
|||| | | | | | ||||| |||||| ||| |||| |||||||||||||
Sbjct 986 GATGG--A-T--C--G--C---AACAAGAACAACCTTAATGTTCAAATGATAATGGATGA 1033
Query 1009 ATGCAAGACATTCTTCTTTGCTGGCCATGAAACCACGGCT-TTGCTCCTCACATGGACAA 1067
|||||||| |||||||| | || ||||| || || || || |||||||| |||||
Sbjct 1034 GTGCAAGACTTTCTTCTTCACCGGTCATGAGACAACCTCTCTT-CTCCTCACGTGGAC-T 1091
Query 1068 C-AATGCTCCTCGC-CGATAATCCCACATGGCAGGAAAAAGTCCGTGAGGAGGTCAGGGA 1125
| |||||||| || | ||||||||||||||||||| || ||||| || ||||||||| |
Sbjct 1092 CTCATGCTCCTTGCTC-ATAATCCCACATGGCAGGACAAGGTCCGCGATGAGGTCAGGCA 1150
Query 1126 GGTCTT-TGGCCGCA-ATGGCCTTCCCTCAGTCGATCAACTATCTAAG-CTAACCTCGTT 1182
|| || ||||| | |||| | ||||| || || || || || ||| || || |||||
Sbjct 1151 AGT-TTGTGGCC-AAGATGGTGTCCCCTCCGTTGAACAGCTCTC-AAGTCTTACTTCGTT 1207
Query 1183 AAGCAAAGTGATTAACGAGTCACTAAGACTTTACCCTCCAGCTACTCTTCTACCAAGGAT 1242
|| ||||||||| |||||||||||||||||||||||||| ||||||||| ||||||| ||
Sbjct 1208 AAACAAAGTGATAAACGAGTCACTAAGACTTTACCCTCCTGCTACTCTTTTACCAAGAAT 1267
Query 1243 GGCATTTGAAGATC-TAAAACTAGGTGATCTAACCATTCCTAAAGGTTTATCAATATGGA 1301
|||||||||||| | ||||||||||||| |||| ||| |||||||||||||| |||||||
Sbjct 1268 GGCATTTGAAGA-CATAAAACTAGGTGACCTAATCATCCCTAAAGGTTTATCTATATGGA 1326
Query 1302 TACCGGTTCTTGCTATCCATCACAGTGAAGAATTATGGGGTAAAGACGCGAACCAATTCA 1361
| || || |||||||||||||| ||| ||||||||||||| |||| |||||| | ||||
Sbjct 1327 TCCCTGTCCTTGCTATCCATCATAGTAAAGAATTATGGGGCGAAGATGCGAACGAGTTCA 1386
Query 1362 ATCCC-GAACG-TTTTGGAGGC-AGACCATTCGCGTCTGGTCGCCATTTCATCCCATTTG 1418
| ||| ||||| ||| || | ||| || || ||| ||||||||||||| || ||||
Sbjct 1387 A-CCCTGAACGATTTACGA--CTAGAAGTTTTGCATCTAGTCGCCATTTCATGCCTTTTG 1443
Query 1419 CAGCCGGTCC-ACGGAACTGCATCGGACA-ACAGTTTGCGTTGATGGAAGCTAAAATAAT 1476
|||| || || | |||||||||| || || || |||||| ||||||| || || |||||
Sbjct 1444 CAGCTGGACCTA-GGAACTGCATTGGCCAGAC-TTTTGCGATGATGGAGGCGAAGATAAT 1501
Query 1477 ATTAGCCACG-TTAATTT-CAAAGTTTAACTTCACAATATCAAAGAATTATAGGCATGCC 1534
|||||| | | || ||| |||| || | ||| || |||| |||| ||||| |||||
Sbjct 1502 ATTAGCAATGCTT-GTTTCCAAA-TTCAGTTTCGCAGTATCGGAGAACTATAGACATGCT 1559
Query 1535 CCAATCGTTGTGCTTACTATAAAACCTAAGTATGGAGTTCAAGT-GATATTGAAGCCA-T 1592
|| || |||||||||||||||||||||||||||||||||||| | | | ||||||||| |
Sbjct 1560 CCTATAGTTGTGCTTACTATAAAACCTAAGTATGGAGTTCAATTAGTT-TTGAAGCCACT 1618
Query 1593 TG 1594
||
Sbjct 1619 TG 1620
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69438516635
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5