BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G38460.1
Length=1949
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494131 jgi|Araly1|494131|fgenesh2_kg.7__3564__AT5G38460.1 2843 0.0
> Ahg494131 jgi|Araly1|494131|fgenesh2_kg.7__3564__AT5G38460.1
Length=1934
Score = 2843 bits (1539), Expect = 0.0
Identities = 1826/1960 (93%), Gaps = 38/1960 (2%)
Strand=Plus/Plus
Query 2 AGaaaaaaaCTAAACGGAGAAGACAAACAAAACAAAGGATGCCGAAGAAGAAGCCGGCGA 61
||| ||||||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 1 AGAGAAAAACTAAACGGAGAAGACAAACAAAAC-AACGATGCCGAAGAAGAAGCCGGCGA 59
Query 62 AACATTCCGGCGAAGATGACATCACCATTCCGGTATCACCACAAACCGGATCTTCGATTG 121
||||||||||||| |||||||||||||||||||||||||||||||||||| ||| ||||
Sbjct 60 AACATTCCGGCGACGATGACATCACCATTCCGGTATCACCACAAACCGGAACTTTAATTG 119
Query 122 ATACTTGGTGGTGGCTAACACATAAAGGAACCACAACTTCATTTCTCTGCATCTCCCTCT 181
|||| ||||||||| || |||||||||||||||| ||||||||||||||||| |||||||
Sbjct 120 ATACCTGGTGGTGGTTAGCACATAAAGGAACCACCACTTCATTTCTCTGCATTTCCCTCT 179
Query 182 TCGCATTACTGATCCGATCTGCTGTAACAATGTATCCATACTCCGGCGCCGGAATTCCTC 241
|||||||||||||||||||||||||| ||||||| |||||||||||||||||||| || |
Sbjct 180 TCGCATTACTGATCCGATCTGCTGTATCAATGTACCCATACTCCGGCGCCGGAATACCAC 239
Query 242 CTAAATTCGGCGATTTCGAAGCTCAGAGACATTGGATGGAGATAACCACAAATCTTCCAG 301
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 240 CTAAATTCGGCGATTTCGAAGCTCAAAGACATTGGATGGAGATAACCACAAATCTTCCAG 299
Query 302 TTATCGATTGGTATAGAAATGGCACTTACAACGATCTCACTTACTGGGGATTAGATTATC 361
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 TTATCAATTGGTATAGAAATGGCACTTACAACGATCTCACTTACTGGGGATTAGATTATC 359
Query 362 CTCCTTTAACTGCTTATCAAAGTTACATCCATGGAATCTTCCTCCGATTCTTCAATCCTG 421
||||||||||||||||||||||||| ||||||||||||||||||||| ||||||| ||||
Sbjct 360 CTCCTTTAACTGCTTATCAAAGTTATATCCATGGAATCTTCCTCCGAATCTTCAACCCTG 419
Query 422 AATCTGTTGCTCTTCTAAGCTCTCGTGGTCACGAATCTTATCTTGGAAAATTGTTGATGA 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 AATCTGTTGCTCTTCTAAGCTCTCGTGGTCACGAATCTTATCTTGGAAAATTGTTGATGA 479
Query 482 GATGGACAGTTTTATCGTCTGATGCTT-TCATATTTTTCCCAGCTGCTCTGTTTTTCGTG 540
|||||||||||||||||||||||| || |||||||||||||||||||||| ||||| |||
Sbjct 480 GATGGACAGTTTTATCGTCTGATG-TTCTCATATTTTTCCCAGCTGCTCTCTTTTTTGTG 538
Query 541 TTGGTGTACCATAGGAATCGAACTAGGGGTGGTAAGAGTGAAGTGGCTTGGCATATTGCT 600
|| ||||||||||||||||||| |||| |||||||||||||||| || ||||| ||||||
Sbjct 539 TTAGTGTACCATAGGAATCGAATTAGGAGTGGTAAGAGTGAAGTAGCATGGCACATTGCT 598
Query 601 ATGATTCTCTTAAACCCTTGCTTGATCCTCATTGATCACGGTCATTTTCAGTACAATTGT 660
||||||||||||||||| || || ||| |||||||||| |||||||||||||||||||||
Sbjct 599 ATGATTCTCTTAAACCCGTGTTTAATCGTCATTGATCATGGTCATTTTCAGTACAATTGT 658
Query 661 ATCAGCTTGGGACTTACAGTTGGTGCTATTGCTGCGGTACTATGTGAGAGCGAGGTTCTC 720
||||| ||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 659 ATCAGTTTGGGACTTACTGTCGGTGCTATTGCTGCGGTACTATGTGAGAGCGAGGTTCTC 718
Query 721 ACTTGTGTCTTGTTCAGTCTAGCCCTCAGCCATAAACAGATGAGTGCATACTTTGCTCCT 780
|||||||| |||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 719 ACTTGTGTTTTGTTCAGTCTAGCTCTCAGTCATAAACAGATGAGTGCATACTTTGCTCCT 778
Query 781 GCCTTTTTCAGCCATCTACTGGGTAAATGCCTAAGACGGAAGAGCCCTA-TACTTT-CTG 838
|||||||||||||||||| | ||||||||||||||| |||| | ||| | || ||| |||
Sbjct 779 GCCTTTTTCAGCCATCTATTCGGTAAATGCCTAAGAAGGAAAAACCC-AGTA-TTTGCTG 836
Query 839 TGATTAAGCTTGGAATTGCAGTCATAGTGACATTTGTTATTTTTTGGTGGCCATATGTGC 898
||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 837 TGATTAAGCTTGGAATTGCAGTCATAGTGACATTTGTTATTGTTTGGTGGCCATATTTGC 896
Query 899 ATTCTTTGGACGACTTCTTAATGGTTCTCTCCCGTCTTGCTCCATTTGAGAGGGGAATAT 958
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 897 ATTCTTTGGACGACTTCTTAATGGTTCTCTCCCGTCTTGCTCCATTTGAGAGGGGAATAT 956
Query 959 ACGAGGATTACGTGGCAAATTTCTGGTGCACTACTTCCATACTCATAAAATGGAAAAATC 1018
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct 957 ACGAGGATTACGTGGCAAATTTCTGGTGCACCACTTCCATACTCATAAAATGGAAAAAAC 1016
Query 1019 TGTTCACAACACAATCCCTCAAGTCTATCAGCTTAGCTGCAACTATATTGGCTTCTCTTC 1078
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1017 TGTTCACAACACAATCCCTCAAGTCTATCAGCTTAGCTGCAACTATATTGGCTTCTCTCC 1076
Query 1079 CTTCAATGGTTCAGCAAATCTTGTCACCAAGCAATGAAGGTTTCCTATATGGCTTGCTCA 1138
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1077 CTTCAATGGTTCAGCAAATCTTGTCACCAAGCAATGAAGGTTTCCTATATGGCTTGCTCA 1136
Query 1139 ACAGTTCAATGGCTTTCTACTTGTTTTCCTTCCAAGTGCATGAGAAATCAATCCTGATGC 1198
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1137 ACAGTTCAATGGCTTTCTACTTGTTTTCCTTCCAAGTGCATGAGAAATCAATCCTGATGC 1196
Query 1199 CTTTTCTCTCCGCAACACTATTAGCTCTCAAACTACCTGACCATTTCAGTCATTTAACCT 1258
|||||||||| ||||||||||||||| ||||||| |||||||||||||||||| ||||||
Sbjct 1197 CTTTTCTCTCTGCAACACTATTAGCTGTCAAACTCCCTGACCATTTCAGTCATCTAACCT 1256
Query 1259 ATTACGCTCTCTTCTCGATGTTCCCTCTTCTTTGCCGTGACAAACTCTTGATCCCTTACT 1318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1257 ATTACGCTCTCTTCTCGATGTTCCCTCTTCTTTGCCGTGACAAACTCTTGATCCCTTACT 1316
Query 1319 TAACACTATCTTTTCTCTTCACCGTCATCTATCATTCACCCGGGAATCACCATGCGATAC 1378
||||||||||||||||||||||| ||||||||||||||||||||||||||||| | ||||
Sbjct 1317 TAACACTATCTTTTCTCTTCACCATCATCTATCATTCACCCGGGAATCACCATTCTATAC 1376
Query 1379 AGAAAACCGACGTTTCATTTTTCTCCTTTAAAAACTTCCCGGGTTATGTTTTCTTACTAC 1438
|||||||| |||||| || |||||||||||||||||| |||||||||||||||||||||
Sbjct 1377 AGAAAACCAACGTTTTATGTTTCTCCTTTAAAAACTTTCCGGGTTATGTTTTCTTACTAA 1436
Query 1439 GAACCCATTTCTTCATCTCCGTAGTTCTTCATGTCCTCTATCTTACCATTAAACCTCCTC 1498
||||||||||||||||||||||||||||||||||||| || ||||||| | |||||||||
Sbjct 1437 GAACCCATTTCTTCATCTCCGTAGTTCTTCATGTCCTTTACCTTACCACTCAACCTCCTC 1496
Query 1499 AGAAGTACCCTTTCCTATTCGAAGCACTGATCATGATTCTCTGTTTCTCATACTTTATAA 1558
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1497 AAAAGTACCCTTTCCTATTCGAAGCACTGATCATGATTCTCTGTTTCTCATACTTTATAA 1556
Query 1559 TGTTTGCCTTTTACACCAACTATACGCAGTGGACTTTGTCAAGTCATTTC-GGATCCTCT 1617
|||||||| ||||||||||||||||||||||||||||||||||||||||| || |||| |
Sbjct 1557 TGTTTGCCATTTACACCAACTATACGCAGTGGACTTTGTCAAGTCATTTCAGG-TCCTTT 1615
Query 1618 GATAAAGAAAAGAAGCAAATCTGAAGAGCAAGGTTGTTTAACTCGGTTCCATTTTTGTTT 1677
|||||||||||||| || ||||||||||||||||||||| | ||||||||||||||||||
Sbjct 1616 GATAAAGAAAAGAAACACATCTGAAGAGCAAGGTTGTTTGATTCGGTTCCATTTTTGTTT 1675
Query 1678 TCTCTGTCTTTTTGCCTATAGATTTAATGTAGCTTAGGGTCTTTACCGAACCAACTCC-G 1736
||| |||||||||| ||| | ||| ||||||| ||||||||||||||||||||| || |
Sbjct 1676 TCTTTGTCTTTTTGGCTA-A-ATTGAATGTAGTTTAGGGTCTTTACCGAACCAAGTCAAG 1733
Query 1737 ATCATCACAGTAGAATCGAGCTAGACAGAAACGGTGGTTTAACATCAGACTTGTTGTATT 1796
||||| ||||||||||| |||||||||||| |||||||||| || ||| |||||||| |
Sbjct 1734 ATCATTACAGTAGAATCTAGCTAGACAGAACCGGTGGTTTATTATGAGAGTTGTTGTAAT 1793
Query 1797 TGGTCCAGGTTTTACTAAATGTTGGT-----CTATATTCCAATGCGTATAAATTGT-TGA 1850
|||||||| | | ||||||||||||| |||||||||||||| |||| ||||| | |
Sbjct 1794 TGGTCCAGATCT-ACTAAATGTTGGTATATACTATATTCCAATGCCTATACATTGTATTA 1852
Query 1851 TGACGTAGGTTTCAAAATTTGGGGTGGTTTCAAAAATTGGGGTAGAGATTTTACCTTT-A 1909
|||| ||| ||||||||||| || || |||||||| |||||| |
Sbjct 1853 TGACTTAGATTTCAAAATTT-----------AA-----GG--TAGAGATTGAACCTTTTA 1894
Query 1910 TGAAAGGAAACGTAAGGTTTTAATGAAATTTTGTGTTGTG 1949
||||||||||||||| ||||||||||||||||||||||||
Sbjct 1895 TGAAAGGAAACGTAAAGTTTTAATGAAATTTTGTGTTGTG 1934
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73247541135
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5