BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G38490.1
Length=1461
Score E
Sequences producing significant alignments: (Bits) Value
Ahg330612 jgi|Araly1|330612|fgenesh1_pm.C_scaffold_7002839 665 0.0
Ahg947990 jgi|Araly1|947990|scaffold_704219.1 616 2e-175
> Ahg330612 jgi|Araly1|330612|fgenesh1_pm.C_scaffold_7002839
Length=1140
Score = 665 bits (360), Expect = 0.0
Identities = 588/694 (85%), Gaps = 32/694 (5%)
Strand=Plus/Plus
Query 586 AGAAACTCTTTGATAATCTTAATGGAGCTTCTACTTCTTCTTCATCGCTCCTGAACCTTC 645
||||| |||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 465 AGAAA-ACTTTGATAATCTTAATGGAGCTTCTA---CTTCTTCATCGCTCATGAACCTTC 520
Query 646 CTTGTCTTGAACCTTCGACAGAGACAAAAGACGTACCAAACCCTAATTACCAATCTTCGT 705
| |||||||||||||||||||||| |||||| || |||||||||||||||||||||| |
Sbjct 521 ATGGTCTTGAACCTTCGACAGAGACGAAAGACATAACAAACCCTAATTACCAATCTTCTT 580
Query 706 CTCCGTCTTCATGCCTAACAGGGAAGACAAACCGCAAGAGGCGTGCCGTGGAGCAGAGGA 765
|||||||||| |||||||||| ||| |||| | ||||||||||||| ||||| ||||| |
Sbjct 581 CTCCGTCTTCGTGCCTAACAGAGAACACAAGCAGCAAGAGGCGTGCGGTGGAACAGAGAA 640
Query 766 AGAG---TGGTAAAGTCAAGAAAGTTAAGGTTTCTCCTTT-GCCAAG-GTTGTGTACAGA 820
|||| ||| | |||||||| |||| || | |||| ||| | | ||| | |||
Sbjct 641 AGAGCAAGGGTGGATTCAAGAAAACAAAGG-TTGTACTTTATCCATGCGCGGTG-AGAGA 698
Query 821 GATGCCTGAGTGGATTTTCCAAGTGATGAGATACATGAACGCTGATGCTGAAACCCCGAG 880
|| || |||||| ||||||| |||||||||||||||||||| ||||| |||| ||||||
Sbjct 699 GACACCAGAGTGGGTTTTCCAGGTGATGAGATACATGAACGCGGATGCCGAAAACCCGAG 758
Query 881 GCTGATATTTGAGAGGACTCTGTTTAAGAGTGATGTCAACTCAAACCTT-AGTCGTCTCT 939
||||||||||||||||| |||||| || ||||||||||||||||| ||| || |||||||
Sbjct 759 GCTGATATTTGAGAGGATTCTGTTCAATAGTGATGTCAACTCAAA-CTTGAGCCGTCTCT 817
Query 940 TAATGCCTTTCCAGAAGCTAATCAGAAACGATTTCCTGACTCCTGCGGAGTGTAGAG-C- 997
|||| ||||| |||||||||||||||||||| ||| |||| ||| ||||||| ||| |
Sbjct 818 TAATCCCTTTTCAGAAGCTAATCAGAAACGACTTCTTGACGCCTTTGGAGTGTCGAGCCT 877
Query 998 TATGCAGAAAGACGAAGACAATGATGAAGAAGACGACGAGAATATTGGTGTGGGAACGGT 1057
|| | ||| ||| |||||| | ||||||| || | |||||||||||||||||||| |
Sbjct 878 TA-G-AGAGAGATGAAGAC-A--ATGAAGATGA--A-GAGAATATTGGTGTGGGAACTAT 929
Query 1058 TCTTGTGAACCAAAGATTTCAAAA-GTGGGGTTTGCGTTTCAAGATATGGGCGAT-G-G- 1113
||||||||| ||||| ||| |||| ||||||||| ||||| |||||||||| ||| | |
Sbjct 930 TCTTGTGAATCAAAGGTTT-AAAATGTGGGGTTTACGTTTTAAGATATGGGTGATGGAGA 988
Query 1114 AGAAGGACTCTGGACATGGAACATTGAATTACACTTTGAATTGGGGTTGGAATGATGTCG 1173
||||||| |||||||||||||| ||||||||||||||||||||||||||||| ||||| |
Sbjct 989 AGAAGGATTCTGGACATGGAACCTTGAATTACACTTTGAATTGGGGTTGGAACGATGTAG 1048
Query 1174 TCAAAAGTA--GCAGCTTAAAAGTCGGCGACAAGATCAGCCTTTGGACTTTCAGGTGCCG 1231
|||| ||| | | ||| |||| | ||||||||||| ||||||||||||||||||||
Sbjct 1049 TCAAGGGTAATG-A-CTTGAAAGCCCATGACAAGATCAGTCTTTGGACTTTCAGGTGCCG 1106
Query 1232 TGGAGTCCTCTGCTTTGCACTTGACACAGAGTAG 1265
||||||||| |||||||||||||||| |||||||
Sbjct 1107 TGGAGTCCTTTGCTTTGCACTTGACATAGAGTAG 1140
> Ahg947990 jgi|Araly1|947990|scaffold_704219.1
Length=1214
Score = 616 bits (333), Expect = 2e-175
Identities = 579/695 (83%), Gaps = 27/695 (4%)
Strand=Plus/Plus
Query 593 CTTTGATAATCTTAATGGAGCTTCTACTTCTTCTTCATCGCTCCTGAACCTTCCTTGTCT 652
|||| ||||||| ||||| ||||| | ||||||||||| || |||| |||| |||| |
Sbjct 508 CTTTCATAATCTCAATGGGGCTTC-A--GCTTCTTCATCGTTCTTGAATCTTCGTTGT-T 563
Query 653 -TGAACCT---T-C-----GACAGAGACAAAAGACGTACCAAACCCTAATTACCAATCTT 702
||| ||| | | ||||||||| | |||| ||||||||||||||||||| ||||
Sbjct 564 ATGAGCCTAAGTCCGAGAAGACAGAGACGAGAGACCTACCAAACCCTAATTACCATTCTT 623
Query 703 CGTCTCCGTCTTCATGCCTAACAGG-GAAGACAAA-CCGCAAGAGGCGTGCCGTGGAGCA 760
| ||||| |||||||||||||| || ||| | ||| |||||||||||||| |||| | ||
Sbjct 624 CTTCTCCATCTTCATGCCTAAC-GGAGAACA-AAAGCCGCAAGAGGCGTGTCGTGCAACA 681
Query 761 GAGGAAGAGTGGTAAAGTCAAGAAAGTTAAGGTTTCTCCTTTGCCAAGGTTGTGTACAGA 820
|||||||||||||||| ||||||||| |||||| ||||||||| ||||| || ||||||
Sbjct 682 GAGGAAGAGTGGTAAATTCAAGAAAGCAAAGGTTGCTCCTTTGCTAAGGTGGTCTACAGA 741
Query 821 GATGCCTGAGTGGATTTTCCAAGTGATGAGATACATGAACGCTGATGCTGAAACCCCGAG 880
|| |||||||||| ||||| | ||||||||||| ||||| |||||||| |||| |||||
Sbjct 742 GACGCCTGAGTGGGTTTTCGAGGTGATGAGATATATGAAAGCTGATGCCGAAAACCCGA- 800
Query 881 GC-TGATATTTGAGAGGACTCTGTTTAAGAGTGATGTC-AACTCAAACCTTAGTCGTCTC 938
|| |||| |||| |||| ||||| || ||||||||| || | || || ||||||
Sbjct 801 GCTTGATCTTTGTGAGGGCTCTGACAAATAGTGATGTCAAAGT-GGGCCAGAGCCGTCTC 859
Query 939 TTAATGCCTTTCCAGAAGCTAATCAGAAACGATTTCCTGACTCCTGCGGAGTGTAGAGCT 998
||| | || |||||| |||||||||||||||| ||| |||| ||||| |||||| ||||
Sbjct 860 TTACTCCCATTCCAGCAGCTAATCAGAAACGACTTCTTGACGCCTGCAGAGTGTCGAGCC 919
Query 999 ATGCAGAAAGACGAAGAC--A-ATGATGAAGAAGACGACGAGAATATTGGTGTGGGAACG 1055
|| ||||||||||||||| | | || || ||||| |||| |||||||||||||||||||
Sbjct 920 ATACAGAAAGACGAAGACGAAGACGAAGACGAAGAAGACGCGAATATTGGTGTGGGAACG 979
Query 1056 GTTCTTGTGAACCAAAGATTTCAAAAGTGGGGTTTGCGTTTCAAGATATGGGCGATGGAG 1115
|||||||||| ||||| | | ||||||||||||| ||||| |||||||||| |||||||
Sbjct 980 ATTCTTGTGAATCAAAGGTCTGAAAAGTGGGGTTTACGTTTTAAGATATGGGTGATGGAG 1039
Query 1116 AAGGACTCTGGACATGGAACATTGAATTACACTTTGAATTGGGGTTGGAATGATGTCGTC 1175
||||||| |||||| ||||| ||||||||| ||||||||||||||||||| || || |||
Sbjct 1040 AAGGACTATGGACACGGAACCTTGAATTACGCTTTGAATTGGGGTTGGAACGAAGTTGTC 1099
Query 1176 AAAAGTAGCAGCTTAAAAGTCGGCGACAAGATCAGCCTTTGGACTTTCAGGTGCCGTGGA 1235
|| ||| | ||||||||| ||||||||| ||||| ||||||||||||||||||||||||
Sbjct 1100 AAGGGTAACGGCTTAAAAGCCGGCGACAAAATCAGTCTTTGGACTTTCAGGTGCCGTGGA 1159
Query 1236 GTCCTCTGCTTTGCACTTGACACA-GAGTAGCTCT 1269
|||||||||||||| ||||| ||| | |||| |||
Sbjct 1160 GTCCTCTGCTTTGCCCTTGAGACATG-GTAGTTCT 1193
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54659501575
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5