BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G38510.1
Length=1576
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494125 jgi|Araly1|494125|fgenesh2_kg.7__3558__AT5G38510.1 2237 0.0
> Ahg494125 jgi|Araly1|494125|fgenesh2_kg.7__3558__AT5G38510.1
Length=1435
Score = 2237 bits (1211), Expect = 0.0
Identities = 1367/1442 (95%), Gaps = 12/1442 (1%)
Strand=Plus/Plus
Query 44 TAAACGTAATTTTCACAAGTCACTGCTTCG-TTATTCGAACTC-CAATTTTTCCTAATCC 101
||||||||||||||||||| |||||||||| |||||||||||| ||||| ||||||||||
Sbjct 1 TAAACGTAATTTTCACAAGACACTGCTTCGTTTATTCGAACTCGCAATTCTTCCTAATCC 60
Query 102 TCGCAACCACAAATCTTCAATCTTCAAGATTAGGATCAGGTTTCTTCGTTCAAAGGACCT 161
|||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||
Sbjct 61 TCGCAACCACAAATCTTCAATCTTTAAGATTAGGATCAGG-TTCTTCGTTCAAAGGACCT 119
Query 162 GAAGATGGCACTGTTTCCTCTTCACCATGAAGTCCCTTGTAAAGGAGAAGTATTGTTTGA 221
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 120 GAAGATGGCACTGTTTCCTCTTCACCATGAAGTCCCTTGTAAAGGAGGAGTATTGTTTGA 179
Query 222 TTCAAATGGTTTAAGACGTTTTTCGTCTGGTCTGAAACATAGAACAATGGCTGAAGCAAC 281
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 TTCAAATGGTTTAAGACGTTTTTCGTCTGGTCTGAAACATAGAACAATGGCTGAAGCAAC 239
Query 282 CACGCTTGGCAGGGATTGTAGGATGAA-GAGTTATATGAAA-TCAATCCCGTATTGTCGT 339
|||||| |||||||||||||||||||| || | | | ||| ||||| |||| ||||| |
Sbjct 240 CACGCTAGGCAGGGATTGTAGGATGAAGGA-TCGTCT-AAATTCAATACCGTTTTGTCAT 297
Query 340 TCACCAAGAAGAAGGTTATGTTTAGTTAGAGCGTCATCAGAGAACAAGATTACCAAACAG 399
||||| ||| |||||||||| || ||||| ||||||||||||||||||||||||||| ||
Sbjct 298 TCACCGAGAGGAAGGTTATGCTTGGTTAGGGCGTCATCAGAGAACAAGATTACCAAAAAG 357
Query 400 AGACTTAAACTGTTGGATTCTTACTTTGGGAAACTTCAAAACGATGATGAGAAGCCTTCT 459
|||||||| |||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 358 AGACTTAAGCTGTTGGATTCTTACTTTGGGAAACTTCAAAATGACGATGAGAAGCCTTCT 417
Query 460 ATCTCAACAGGAGATGATATTGATCGCAAAGCTGAACTCAATGTGAATGAAGAGTTGGAT 519
|||||||| ||||||||||||||||| |||||||||||||||| | || |||||||||||
Sbjct 418 ATCTCAACGGGAGATGATATTGATCGGAAAGCTGAACTCAATGCGGATAAAGAGTTGGAT 477
Query 520 TCTTTGAGTGCTTATCTTGACAAACTCCAAAAAGATGCAAAATCTAAAGGTTTAGTCTCG 579
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 478 TCTTTGAGTGTTTATCTTGACAAACTCCAAAAAGATGCAAAATCTAAAGGTTTAGTCTCG 537
Query 580 TCCACCTTGGACGTGGTAAAATCAGAAGGCGGTTCAGTAGCAAGCAAATTGAGAAAGACT 639
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 538 TCCACCTTGGACGTGGTAAAATCAGAAGGCGGTTCAGTAGCAAGCAAATTGAGAAAGACT 597
Query 640 GGTATTGAAAACAATAATAGTCCTTTCCAGCAGTTTGATGATGAAGATCAAGCAGAAGAT 699
|||||||||| |||||||||||||||||||||| |||||||||| |||||| ||||||||
Sbjct 598 GGTATTGAAAGCAATAATAGTCCTTTCCAGCAGCTTGATGATGATGATCAATCAGAAGAT 657
Query 700 ACATTGAACTTCTATGCTGTGAGCATATTAGCATCCATCAATGTTGGTGTCTGCTTGTTT 759
|||||||||||||||||||||||||||||||||||||| ||||| ||||| |||||||||
Sbjct 658 ACATTGAACTTCTATGCTGTGAGCATATTAGCATCCATAAATGTCGGTGTGTGCTTGTTT 717
Query 760 GAGGCGGCAGCGCCAGTTAGGAACAACAATATGGGACT-CTTATCACTCCCTTTGTTATA 818
|| |||||||||||||||||||| ||| |||||||||| || ||||||||| ||||||||
Sbjct 718 GAAGCGGCAGCGCCAGTTAGGAATAACGATATGGGACTGCT-ATCACTCCCGTTGTTATA 776
Query 819 TGGAGCAAAGATAAATGATCTAATCCTTGCTGGAGAATGGTGGAGGCTGGTCACACCCAT 878
|||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 777 TGGAGCCAAGATAAATGATCTAATCCTGGCTGGAGAATGGTGGAGGCTGGTCACACCCAT 836
Query 879 GTTTCTGCACTCTGGAATTCCTCATGTAGCCCTTAGCTCCTGGGCTCTGCTTACTTTTGG 938
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 837 GTTTCTGCACTCTGGAGTTCCTCATGTAGCCCTTAGCTCCTGGGCTCTGCTTACTTTTGG 896
Query 939 ACCAAAAGTCTGCCGTGACTATGGATTATTCACGTTTTGTCTCATTTACATTCTCGGAGG 998
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 897 ACCAAAAGTCTGCCGTGACTATGGACTATTCACGTTTTGTCTCATTTACATTCTCGGAGG 956
Query 999 AGTCTCTGGAAATTTCATGAGCTTTCTGCATACAGCAGATCCTACAGTTGGAGGAACTGG 1058
||||||||| ||||||||||||||||| |||||| |||||||||||||||||||||||||
Sbjct 957 AGTCTCTGGTAATTTCATGAGCTTTCTTCATACACCAGATCCTACAGTTGGAGGAACTGG 1016
Query 1059 ACCAGCATTTGCGTTAATAGGAGCTTGGCTCGTTGACCAAAATCAGAACAAAGAGATGAT 1118
|||||||||||| |||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 1017 ACCAGCATTTGCATTAATAGGAGCTTGGCTCGTCGACCAAAATCAGAACAAGGAGATGAT 1076
Query 1119 CAAAAGCAACGAATATGAGGACTTGTTTCAGAAGGCCATTATAATGACAGGATTTGGTCT 1178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1077 CAAAAGCAACGAATATGAGGACTTGTTTCAGAAGGCCATTATAATGACAGGATTTGGTCT 1136
Query 1179 CATATTAAGCCATTTCGGTCCAATTGATGACTGGACAAATCTGGGAGCACTTATAGCAGG 1238
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 1137 CATATTAAGCCATTTCGGCCCAATTGATGACTGGACAAATCTGGGAGCACTTATAGCCGG 1196
Query 1239 GATTGTATACGGGTTTTTCACTTGTCCGGTGCTACAACTTGGTAGCGGCGGAAGTGAAAG 1298
|||||||||||| || ||||||||||| ||||| |||||||| || | |||||||||
Sbjct 1197 GATTGTATACGGATTCTTCACTTGTCCAGTGCTCCAACTTGGAAGAGA---AAGTGAAAG 1253
Query 1299 GCAAGAAGGGATTGTGACGGTTGGACCAGAGAAACAAAACAGCGCTGACCCGTGTAAATC 1358
|||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1254 ACAAGAAGGGATTGTAACGGTAGGACCAGAGAAACAAAACAGCGCTGACCCGTGTAAATC 1313
Query 1359 GTTTCTGCTTTTCACAATCTTCGTCGCGGTTATTGTGACTTCTCTGCTACTGATTGGGGA 1418
||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 1314 GTTTCTGCTTTTCACAATCTTTGTCGCGGTTATTGTGACTTCTCTGCTACTTATTGGGGA 1373
Query 1419 CGGTCCATTGGACTTCCCAACGTACGATGATGTTGTGTATTCTCTCATTTAGTGTATCAT 1478
||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1374 CGGACCATTGGACTTCCCAACGTACGATGATGTTGTGTATTCTCTCATCTAGTGTATCAT 1433
Query 1479 CA 1480
||
Sbjct 1434 CA 1435
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59039879750
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5