BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G38530.1
Length=1756
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494122 jgi|Araly1|494122|fgenesh2_kg.7__3555__AT5G38530.1 2610 0.0
> Ahg494122 jgi|Araly1|494122|fgenesh2_kg.7__3555__AT5G38530.1
Length=1686
Score = 2610 bits (1413), Expect = 0.0
Identities = 1570/1646 (95%), Gaps = 9/1646 (1%)
Strand=Plus/Plus
Query 48 GATAACAAAGAAATGGCCTCTCAATTGCTTTTACCTCCAAACCAATTCACTAAATCAGTC 107
|||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 23 GATAACAAAGAAATGGCCTCTCAATTGCTTTTGCCTCCAAACCAATTCACCAAATCAGTC 82
Query 108 TCACCTCAAGTTTTCATT-ACTGGTGATTGTCAAGGATTTAGTGACTTAACTCTGAAAAG 166
||| || |||||||| || |||||||||| ||||||||||||||||||||| |||| |||
Sbjct 83 TCAGCTAAAGTTTTC-TTCACTGGTGATTATCAAGGATTTAGTGACTTAACCCTGAGAAG 141
Query 167 AAAATCAAACCAAGCTAC-AAGAGTTTC--A-AATGGATCTAGCTTAAGAGTAAAAGCAG 222
|||||| || ||||| || ||| ||||| | ||||||| ||||||||||| ||||||||
Sbjct 142 AAAATCTAATCAAGC-ACAAAGGGTTTCAAATAATGGATTTAGCTTAAGAGCAAAAGCAG 200
Query 223 CTTTGAGATCTACTCACAACAAATCAGTGGTTGAGATTCCAAAACAATGGTATAATCTTG 282
||||||||||||| ||||||||||| ||||||| ||||||||||||||||| |||||||
Sbjct 201 ATTTGAGATCTACTAACAACAAATCATTGGTTGAAATTCCAAAACAATGGTACAATCTTG 260
Query 283 TTGCTGATCTTTCAGTCAAGCCTCCTCCACCGTTGCATCCAAAGACTTTCGAACCGATAA 342
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 261 TTGCTGATCTTTCAGTCAAGCCTCCTCCACCGTTGCATCCAAAGACTTTCCAACCGATAA 320
Query 343 AACCCGAAGATTTGGCTCATCTTTTCCCCAATGAGTTGATTAAACAAGAAGCTACACAAG 402
|||| ||||||||| ||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 321 AACCTGAAGATTTGTCTCATCTTTTCCCCAATGAGTTGATTAAACAAGAAGCAACACAAG 380
Query 403 AGAGGTTTATTGATATCCCTGAGGAAGTTCTTGAAATCTATAAGCTTTGGCGTCCAACTC 462
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 381 AGAGGTTTATTGATATCCCTGAGGAAGTTCTTGAAATCTATAAGCTTTGGCGTCCAACTC 440
Query 463 CTCTAATCAGAGCAAAGAGATTAGAGAAGCTTCTTCAAACACCGGCAAGGATTTACTTCA 522
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 441 CTCTAATCAGAGCAAAGAGATTAGAGAAGCTTCTTCAGACACCGGCAAGGATTTACTTCA 500
Query 523 AGTATGAAGGTGGTAGCCCAGCTGGTTCACACAAACCAAACACAGCGGTTCCACAAGCTT 582
||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct 501 AGTATGAAGGTGGTAGCCCAGCTGGTTCACACAAACCCAACACAGCGGTTCCGCAAGCTT 560
Query 583 ATTACAATGCGAAAGAAGGCGTCAAGAACGTTGTGACGGAAACCGGTGCTGGTCAATGGG 642
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 561 ATTACAATGCGAAAGAAGGCGTCAAGAACGTTGTGACGGAAACCGGTGCTGGCCAATGGG 620
Query 643 GAAGTTCTTTAGCCTTTGCTTCTAGTCTATTTGGTCTCGACTGCGAAGTATGGCAAGTAG 702
| |||||||||||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct 621 GCAGTTCTTTAGCCTTTGCTTCTAGTCTATTTGGCCTTGACTGCGAAGTATGGCAAGTAG 680
Query 703 CCAACTCTTACCATACAAAGCCATATCGCCGGTTAATGATGCAAACTTGGGGTGCAAAGG 762
||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 681 CCAACTCGTACCATACAAAGCCATATCGTCGGTTAATGATGCAAACTTGGGGTGCAAAGG 740
Query 763 TTCATCCGTCGCCATCGGATCTCACTGAGGCGGGTAGAAGAATCCTCGAATCCGATCCAT 822
||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 741 TTCATCCATCGCCATCGGATCTCACTGAGGCAGGTAGAAGAATCCTCGAATCCGATCCAT 800
Query 823 CAAGTCCGGGAAGTTTAGGCATTGCGATATCAGAAGCGGTTGAAGTTGCAGCGAGAAACG 882
|||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct 801 CAAGTCCGGGAAGTTTAGGCATTGCGATTTCAGAAGCTGTTGAAGTTGCAGCGAGAAACG 860
Query 883 AGGATACAAAATACTGCCTAGGGAGTGTATTGAACCATGTGTTGTTACACCAAACAATTA 942
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 861 AGGATACAAAATACTGCCTAGGGAGTGTATTGAACCATGTGTTGTTACACCAGACAATTA 920
Query 943 TTGGAGAAGAATGCATTCAACAAATGGAGAATTTTGGTGAAACACCTGACCTGATCATAG 1002
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 921 TTGGAGAAGAATGCATTCAACAAATGGAGAATTTTGGTGAAACACCTGATTTGATCATAG 980
Query 1003 GGTGTACTGGTGGAGGATCAAATTTTGCTGGTTTGAGTTTTCCTTTTATCCGGGAGAAAC 1062
||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct 981 GGTGTACTGGTGGAGGATCAAATTTTGCTGGTTTGAGTTTTCCTTTTATTCGAGAGAAAC 1040
Query 1063 TCAAAGGCAAA-ATCAACCCTGTTATAAGAGCGGTTGAGCCATCTGCTTGTCCTTCCTTG 1121
||||||| ||| || |||||||||||||||||||||||||| || |||||||||||||||
Sbjct 1041 TCAAAGG-AAATATAAACCCTGTTATAAGAGCGGTTGAGCCCTCGGCTTGTCCTTCCTTG 1099
Query 1122 ACCAAAGGGGTTTATGCTTATGATTTTGGCGATACGGCTGGATTGACTCCTTTGATGAAG 1181
|||||||||||||| || ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1100 ACCAAAGGGGTTTACGCGTATGATTTTGGCGATACAGCTGGATTGACTCCTTTGATGAAG 1159
Query 1182 ATGCATACTTTGGGACATGACTTCATTCCTGATCCTATCCATGCCGGTGGATTAAGGTAC 1241
||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1160 ATGCATACTTTAGGACATGACTTCATTCCTGATCCTATCCATGCCGGTGGATTACGGTAC 1219
Query 1242 CATGGGATGGCACCATTGATCTCACATGTTTATGAACAAGGATTCATGGAAGCAATTTCA 1301
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1220 CATGGGATGGCACCCTTGATCTCACATGTTTATGAACAAGGATTCATGGAAGCAATTTCA 1279
Query 1302 ATTCCTCAAATTGAGTGTTTCCAAGGTGCTATTCAGTTTGCAAGAACAGAAGGGATCATA 1361
||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1280 ATTCCTCAAATCGAGTGTTTCCAAGGTGCTATTCAGTTTGCAAGAACAGAAGGGATAATA 1339
Query 1362 CCCGCACCAGAACCGACCCACGCCATTGCTGCAACCATAAGAGAGGCTCTCCGATGTAAA 1421
||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| |||
Sbjct 1340 CCCGCACCAGAACCGACTCACGCCATTGCTGCAACCATAAGAGAAGCTCTCCGATGCAAA 1399
Query 1422 GAGACGGGAGAAGCAAAAGTGATACTAATGGCGATGTGTGGACATGGCCATTTCGACCTT 1481
||||| |||||||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 1400 GAGACAGGAGAAGCAAAAGTGATACTAATGGCTATGTGTGGACATGGCCACTTCGACCTT 1459
Query 1482 ACTTCTTACGACAAGTATTTAAAAGGCGAGTTGGTGGATTTATCATTCAGCGAAGAGAAG 1541
| |||||||||||||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct 1460 GCCTCTTACGACAAGTATTTAAAAGGCGAGTTGATAGATTTATCATTCAGCGAAGAGAAG 1519
Query 1542 ATACGAGAGTCTTTGTCCAAGGTTCCTCATGTTGTTTAAGCTCGAATGGCCCCATAACCA 1601
||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||
Sbjct 1520 ATACGAGAGTCTTTGTCCAAGGTTCCTCATGTTGTTTAAGCTCGAGTGGCTCCATAACCA 1579
Query 1602 CGGGAAACCAATGTCCCATGTTCCAAACTAGACGTGAGACAGAAGTTAGGTTTAATCTTG 1661
|||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 1580 CGGGAAACCAATGTCCCATGTTCCAAACTAGACGTGTGACAGAAGTTAGGTTTATTCTTG 1639
Query 1662 GCTTTTGAAATGAAGAGTGAGAGAGA 1687
||||||||||| ||||| ||| ||||
Sbjct 1640 GCTTTTGAAATAAAGAGAGAGGGAGA 1665
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65896123850
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5