BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G38550.1

Length=2074
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg355180 jgi|Araly1|355180|fgenesh1_pg.C_scaffold_7002353           263    4e-69


> Ahg355180 jgi|Araly1|355180|fgenesh1_pg.C_scaffold_7002353
Length=456

 Score =  263 bits (142),  Expect = 4e-69
 Identities = 309/387 (80%), Gaps = 22/387 (6%)
 Strand=Plus/Plus

Query  1400  TTAAAGCTCTTGGAGCATATTATCGCCCGATTCCTCCT-ACTCCTGATGTGAA-AAGACT  1457
             |||| |||||||||||| ||||||| || |||||| ||  |||||| ||  || || |||
Sbjct  26    TTAATGCTCTTGGAGCAAATTATCGTCCTATTCCT-CTGGCTCCTGCTG-CAATAAAACT  83

Query  1458  AGAAGCACAAGGTGGTGATGGAGGAGCTTCTTGGGATGATGGTGGTACTTTCAACAG-TG  1516
             ||| ||| ||||||||||||||||||||||||||||||| ||| ||| |||  | || ||
Sbjct  84    AGAGGCAAAAGGTGGTGATGGAGGAGCTTCTTGGGATGACGGTCGTAATTTTGA-AGGTG  142

Query  1517  TTAGAAAGATCTACATTGGACTAGGCAAAAACGTTGTAGGCTTTGTCAAGTTTTTGTACT  1576
             |||||||||| | ||| |||||| || |||||| | ||| ||| ||||||||| ||||||
Sbjct  143   TTAGAAAGATATTCATAGGACTAAGCGAAAACGCTATAGCCTTCGTCAAGTTTATGTACT  202

Query  1577  ACAAAAACGCTCGTGTTG-TC-ATCGGAGATGATCATGGCAACAAGACCCTTTCATCTGA  1634
             ||||| ||||||| | || || | ||||||||||||||| ||||||||| ||  || |||
Sbjct  203   ACAAAGACGCTCG-GATGGTCTA-CGGAGATGATCATGGGAACAAGACC-TT--ATTTGA  257

Query  1635  TCTCCTAGAGTTCTTGTTGGAT---CC-GTTTGAACATATCATATCAGTGGAGGGTACTT  1690
             |  |  |||||||    || ||   || ||| ||| || |||  ||||||||||||| ||
Sbjct  258   TGACAAAGAGTTCGAACTGAATTATCCAGTT-GAATATGTCACGTCAGTGGAGGGTAGTT  316

Query  1691  ATGATGATACATCTGGAGGT-ATAACCATGCTTAGGTTCGAGACCAACTTACAAAAA-TC  1748
             ||||  ||| ||| || ||| |||||||||||||||||| ||||||||  || |||  | 
Sbjct  317   ATGAAAATAAATCCGG-GGTTATAACCATGCTTAGGTTCAAGACCAACA-ACCAAACCTT  374

Query  1749  TCCATACTTTGGATTTGGTACAACATC  1775
             |||| || ||||| | |||||||||||
Sbjct  375   TCCAGACATTGGAATCGGTACAACATC  401



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 78008821760


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5