BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G38560.1
Length=2798
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494121 jgi|Araly1|494121|fgenesh2_kg.7__3554__AT5G38560.1 4205 0.0
> Ahg494121 jgi|Araly1|494121|fgenesh2_kg.7__3554__AT5G38560.1
Length=2789
Score = 4205 bits (2277), Expect = 0.0
Identities = 2649/2821 (94%), Gaps = 56/2821 (2%)
Strand=Plus/Plus
Query 1 AAAACGAAACTCAAGTCAATGAATAAAAAGACGAAACAAT-GCTATGAT-AAGAAAAGAA 58
|||| |||||||||||||||||| |||||||| ||| ||| |||||||| ||| ||| |
Sbjct 1 AAAAAGAAACTCAAGTCAATGAAGAAAAAGACTAAAAAATGGCTATGATAAAG-AAA-CA 58
Query 59 ACAACACTCG---AAAAAGTTCTTCTTTTTCTTCCGCACATGTCTGACTCTCTCATAAGC 115
|||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 59 ACAACACTCGAAAAAAAAGCTCTTCTTTTTCTTCCGCACATGTCTGACTCTCTCATAAGC 118
Query 116 GTAAATCGCTCTGTCAAATATCTCTGACCAGAGAGACAGAGTTGCCTCCACGTTTCTTCA 175
||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct 119 GTAAATCTCTCTGTCAAATATCTCTGACCAGAGAGACAGAGTTGCCTCCACGTTTGTCCA 178
Query 176 GACAAGACTCACGCTCTTCCCTTTCACCACATTCCCTTC-TCCATTTCTCAATCTCACTT 234
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 179 GACAAGACTCACGCTCTTCCCTTTCACCACATTCCCTTCTTCCATTTCTCAATCTCACTT 238
Query 235 -ACCTTCTCGA---TTCTTGCTCCAATTTCGAATCTTCCGAGTGAAAAAAGCTTCAAAGT 290
| |||||||| ||||| ||||||||||||||||||| ||||||||||||| ||||||
Sbjct 239 AAGCTTCTCGATTCTTCTTCCTCCAATTTCGAATCTTCCAAGTGAAAAAAGCTCCAAAGT 298
Query 291 TTGGAACTTTCTAGTGTTTATTAATCTGGGTCTGCTCTGAGTTTCGTGTGTAGCTGCATA 350
||||||||||||| |||| || ||||||| ||||||||| |||||| ||||||| ||
Sbjct 299 TTGGAACTTTCTACAGTTTCTTCATCTGGGCCTGCTCTGAATTTCGTTTGTAGCTTAATC 358
Query 351 TGAGCTTAAAGCTCGAGTTTTTCCATCTGGGT-TTGGAATTCTAGGGCTAGTGATTGGAG 409
||||||||||| |||||||||| | ||||||| ||| |||||||||||||||||||| ||
Sbjct 359 TGAGCTTAAAGTTCGAGTTTTTACTTCTGGGTATTGAAATTCTAGGGCTAGTGATTGAAG 418
Query 410 ATTTTGGGAATTTAGGTTGATTTTAGTAGGTTTGACTTCAGGTTGCGTAATTTAGGTTGA 469
|||||||||| ||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 419 ATTTTGGGAACTTAGGTTGA-TTTAGTAGGTTTGACTTCAGGTTGCGGAATTTAGGTTGA 477
Query 470 TTTTGATCCGATTTGTGGAATTAGGGTTTGTTTGTTCACAAAGCTTCAATTTTTGGAGTT 529
|||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 478 TTTTGATCTGATTTGTGGAATTAGGGTTTGTTTGTTCATAAAGCTTCAATTTTTGGCGTT 537
Query 530 TAAATGGATCGATAACGACTGTGTTAGAAGAAAGTTTGCTGCTTCAGATTCGTATTCGAT 589
|||||||||||||||||| |||||||||||||||||| ||||| |||||||||| ||||
Sbjct 538 TAAATGGATCGATAACGAAGGTGTTAGAAGAAAGTTTGTTGCTTTAGATTCGTATACGAT 597
Query 590 ATAGAAATGAGTTTGGTTCCTCCTTTACCGATTTTATCACCACCGTCGTCAAATTCTTCA 649
| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 598 AAAGAAATGAGTTTGGTTCCTCCTTTACCGATTTTATCGCCACCGTCGTCAAATTCTTCA 657
Query 650 ACAACTGCACCTCCTCCGTTACAGACTCAGCCCACCACTCCATCTGCTCCACCTCCGGTT 709
|| || |||||||||||||||| | |||||||||||||||||||||||||||||||||||
Sbjct 658 ACTACCGCACCTCCTCCGTTACCGTCTCAGCCCACCACTCCATCTGCTCCACCTCCGGTT 717
Query 710 ACACCACCTCCTTCTCCGCCGCAATCTCCGCCGCCGGTTGTATCATCAT---CACCACCA 766
||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||
Sbjct 718 ACACCACCTCCTTCTCCGCCGCAATCTCCTCCGCCGGTTGTATCATCATCACCACCACCA 777
Query 767 CCACCGGTTGTTTCGTCACCTCCACCGTCTTCTTCTCCACCACCGTCACCTCCTGTCATC 826
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
Sbjct 778 CCACCGGTTGTTTCGTCACCTCCACCGTCTTCTTCTCCACCACCGTCACCTCCCGTCGTT 837
Query 827 ACTTCACCTCCTCCCACCGTTGCTTCTTCCCCTCCACCTCCTGTGGTGATTGCTTCCCCT 886
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 838 ACTTCACCTCCTCCCACCGTTGCTTCTTCCCCTCCACCTCCTGTGGTGATTGCTTCTCCT 897
Query 887 CCTCCCTCAACTCCGGCGACAACACCACCAGCTCCTCCGCAAACTGTCTCACCTCCACCG 946
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 898 CCTCCCTCTACTCCGGCGACAACACCACCAGCTCCTCCGCAAACTGTCTCACCTCCACCA 957
Query 947 CCTCCTGATGCTTCTCCATCACCTCCCGCACCAACAACAACAAATCCTCCTCCTAAACCT 1006
||||||||||||||||| |||||||| ||||||||||||||||| |||||||||||||||
Sbjct 958 CCTCCTGATGCTTCTCCCTCACCTCCTGCACCAACAACAACAAACCCTCCTCCTAAACCT 1017
Query 1007 TCTCCTTCACCGCCGGGAGAAACACCTTCACCACCGGGAGAAACACCTTCACCGCCTAAA 1066
||||||| |||| | |||||||||||||||||||||||||||
Sbjct 1018 TCTCCTT---CGCC----G--------------CCGGGAGAAACACCTTCACCGCCTAAA 1056
Query 1067 CCTTCTCCGTcaactccaactccaacaacaaccacatctcctcctcctcctccagctacc 1126
|||||| | | | | |||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1057 CCTTCT-C--C-A-T-CAACTCCAACAACAACCACATCTCCTCCTCCTCCTCCAGCTATC 1110
Query 1127 tctgcttctcctccGTCTTCAAATCCTACTGATCCTTCTACGTTAGCTCCTCCTCCAACT 1186
|||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 1111 TCTGCTTCTCCTCCGTCTTCAAATCCAACTGATCCTTCTACTTTAGCTCCTCCTCCAACT 1170
Query 1187 CCATTACCTGTTGTTCCCAGAGAGAAACCAATTGCTAAACCAACTGGACCAGCTTCAAAC 1246
|||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1171 CCATTACCTGTTCTTCCCAGAGAGAAACCAATTGCTAAACCAACTGGACCATCTTCAAAC 1230
Query 1247 AATGGAAACAACACTTTGCCGTCTAG-TTCACCAGGTAAAAGCGAAGTTGGTACTGGAGG 1305
||||||||||||||| ||| |||| | |||| ||||||| |||| |||||||||||||||
Sbjct 1231 AATGGAAACAACACTATGCAGTCT-GATTCATCAGGTAAGAGCGGAGTTGGTACTGGAGG 1289
Query 1306 TATTGTAGCTATCGGAGTGATTGTGGGATTGGTTTTTCTTAGCCTTTTTGTGATGGGTGT 1365
|||||||||||| |||| ||| || ||||||||||||||||||||||||||| |||||||
Sbjct 1290 TATTGTAGCTATTGGAGCGATAGTCGGATTGGTTTTTCTTAGCCTTTTTGTGTTGGGTGT 1349
Query 1366 GTGGTTCACTCGGAAACGAAAGCGAAAGGACCCTGGAACCTTTGTTGGATACACAATGCC 1425
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1350 GTGGTTCACTCGGAAACGAAAGCGAAAGGACCCTGGAACCTTTGTTGGATACACTATGCC 1409
Query 1426 TCCTTCCGCTTATTCATCTCCTCAAGGCTCAGATGTAGTGCTCTTCAACTCGCGTTCTTC 1485
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1410 TCCTTCCGCTTATTCATCTCCTCAAGGCTCAGATGTAGTGCTCTTCAACTCGCATTCTTC 1469
Query 1486 AGCTCCTCCTAAAATGAGAAGCCATTCTGGTAGCGATTACATGTATGCGTCATCTGATTC 1545
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1470 AGCTCCTCCTAAGATGAGAAGCCATTCTGGTAGCGATTACATGTATGCGTCATCTGATTC 1529
Query 1546 AGGCATGGTTAGCAACCAAAGATCATGGTTTTCATATGATGAGTTATCTCAAGTTACCAG 1605
|||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| ||
Sbjct 1530 AGGCATGGTTAGCAACCAAAGATCTTGGTTTTCATATGATGAATTATCTCAAGTTACAAG 1589
Query 1606 TGGGTTCTCCGAGAAGAATCTTCTCGGTGAAGGAGGGTTTGGCTGTGTATACAAAGGCGT 1665
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1590 TGGGTTCTCCGAGAAGAATCTTCTCGGTGAAGGAGGGTTTGGCTGTGTATACAAAGGCGT 1649
Query 1666 TCTTTCTGACGGAAGGGAAGTGGCAGTTAAACAGTTAAAGATTGGTGGAAGCCAAGGGGA 1725
|||| | ||||||||||||||||||||||||||||| |||||||||||||| ||||| ||
Sbjct 1650 TCTTGCAGACGGAAGGGAAGTGGCAGTTAAACAGTTGAAGATTGGTGGAAGTCAAGGAGA 1709
Query 1726 GAGAGAGTTCAAAGCAGAAGTTGAAATCATTTCTCGGGTTCATCACCGCCATTTGGTTAC 1785
||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 1710 GAGAGAGTTCAAAGCAGAAGTTGAAATTATTTCTCGGGTTCATCACCGTCATTTGGTTAC 1769
Query 1786 ACTAGTTGGTTATTGCATCTCAGAGCAACATAGGTTGCTTGTATATGATTATGTACCTAA 1845
| |||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1770 ATTAGTCGGTTATTGCATCTCGGAGCAACATAGGTTGCTTGTATATGATTATGTACCTAA 1829
Query 1846 CAACACTCTCCATTATCATCTCCATGCTCCAGGAAGACCAGTTATGACTTGGGAAACTCG 1905
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1830 CAACACTCTCCATTATCATCTCCATGCTCCAGGAAGACCGGTTATGACTTGGGAAACTCG 1889
Query 1906 GGTAAGGGTCGCTGCTGGTGCAGCTCGTGGAATCGCCTACTTACATGAAGACTGTCATCC 1965
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1890 GGTAAGGGTCGCTGCTGGTGCAGCTCGTGGAATCGCCTACTTACATGAAGACTGTCATCC 1949
Query 1966 CCGCATTATTCACCGTGACATAAAATCTTCCAACATACTTCTT-GATAACAGCTTTGAAG 2024
||||||||||||||||||||| ||||| |||||||||||| || ||||||||||||||||
Sbjct 1950 CCGCATTATTCACCGTGACATTAAATCATCCAACATACTT-TTAGATAACAGCTTTGAAG 2008
Query 2025 CCTTGGTTGCGGATTTTGGACTTGCAAAAATTGCACAAGAACTGGATTTAAACACACACG 2084
|||||||||| |||||||| ||||| ||||| ||||||||||||||||||||||||||||
Sbjct 2009 CCTTGGTTGCAGATTTTGGGCTTGCGAAAATAGCACAAGAACTGGATTTAAACACACACG 2068
Query 2085 TCTCAACGCGCGTAATGGGAACCTTTGGGTACATGGCTCCTGAATATGCAACAAGTGGAA 2144
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2069 TCTCAACACGCGTAATGGGAACCTTTGGGTACATGGCTCCTGAATATGCAACAAGTGGAA 2128
Query 2145 AGCTGTCTGAAAAAGCAGATGTTTATTCGTATGGGGTAATACTGTTGGAGCTTATAACTG 2204
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 2129 AGCTGTCTGAAAAAGCGGATGTTTATTCGTATGGGGTAATACTGTTGGAGCTTATAACTG 2188
Query 2205 GCCGTAAACCCGTAGATACGTCTCAACCACTTGGTGATGAGAGCCTTGTTGAATGGGCAA 2264
|||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2189 GCCGCAAACCTGTAGATACGTCTCAACCACTTGGTGATGAGAGCCTTGTTGAATGGGCAA 2248
Query 2265 GACCCTTGCTGGGTCAAGCAATCGAGAACGAAGAATTCGACGAGCTAGTAGATCCGAGGC 2324
||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 2249 GACCCTTGCTGAGTCAAGCAATCGAAAACGAAGAATTCGACGAGCTAGTAGATCCGAGGC 2308
Query 2325 TAGGGAAAAACTTCATCCCAGGAGAGATGTTCAGAATGGTAGAAGCTGCGGCTGCATGTG 2384
||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 2309 TAGGGAACAACTTCATCCCGGGAGAGATGTTCAGAATGGTAGAAGCTGCGGCTGCATGTG 2368
Query 2385 TCCGCCACTCAGCTGCAAAAAGACCAAAGATGAGTCAAGTGGTGAGAGCTTTGGACACAC 2444
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 2369 TCCGCCACTCAGCTGCAAAAAGACCAAAGATGAGCCAAGTGGTGAGAGCTTTGGACACAC 2428
Query 2445 TTGAAGAAGCAACGGACATAACCAACGGAATGAGACCAGGACAGAGCCAAGTGTTTGACT 2504
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2429 TGGAAGAAGCAACGGACATAACCAACGGAATGAGACCAGGACAGAGCCAAGTGTTTGACT 2488
Query 2505 CGAGACAACAATCTGCTCAGATAAGGATGTTTCAAAGAATGGCTTTTGGGAGTCAAGATT 2564
||||||||||||||||||||||||| |||||||| |||||||||||||| ||||||||||
Sbjct 2489 CGAGACAACAATCTGCTCAGATAAGAATGTTTCAGAGAATGGCTTTTGGAAGTCAAGATT 2548
Query 2565 ATAGTTCTGACTTCTTTGATCGCTCACAGTCACATAGTAGCTGGGGCAGTCGTGACCAGT 2624
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 2549 ATAGTTCTGACTTCTTTGATCGCTCACAGTCACATAGTAGCTGGGGAAGTCGTGACCAGT 2608
Query 2625 CCAGATTTGTACCTTAGTAGTTTTTATTGCCTTTGCTTCTTTCTTCTTTCCCTTTAAACA 2684
|||||||||||||||||||| |||||||| |||||| |||||||||||||| |||||||
Sbjct 2609 CCAGATTTGTACCTTAGTAGGTTTTATTGTTTTTGCTACTTTCTTCTTTCCCCTTAAACA 2668
Query 2685 TGTCCTCGATCTTGTATATTCTTTTGCATGATATAATGTATTTTTGAAA-TATACATACA 2743
|||| |||||||||||||||||||||||||||||||||||||||| ||| ||||||||||
Sbjct 2669 TGTCTTCGATCTTGTATATTCTTTTGCATGATATAATGTATTTTTTAAAATATACATACA 2728
Query 2744 TACACACA--T---A-AAA-TTTGGTAGTCTTTTGAAGAAAAAGAATAACAGATGTATTT 2796
|||||| | | | ||| ||||||||||||||||||||||||||| |||||| |||||
Sbjct 2729 TACACATAAATTTGATAAAATTTGGTAGTCTTTTGAAGAAAAAGAATTACAGATATATTT 2788
Query 2797 G 2797
|
Sbjct 2789 G 2789
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 105586159140
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5