BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G38580.1
Length=507
Score E
Sequences producing significant alignments: (Bits) Value
Ahg497396 jgi|Araly1|497396|fgenesh2_kg.315__1__AT5G38580.1 597 2e-170
Ahg494109 jgi|Araly1|494109|fgenesh2_kg.7__3542__AT5G38580.1 597 2e-170
> Ahg497396 jgi|Araly1|497396|fgenesh2_kg.315__1__AT5G38580.1
Length=474
Score = 597 bits (323), Expect = 2e-170
Identities = 393/427 (92%), Gaps = 4/427 (1%)
Strand=Plus/Plus
Query 71 ATGATGGGTTTGATGATGG-TTATGTTTTCAACCAGCTTAAACATCTGAACCTATGTGTG 129
||| || || ||||||||| ||| |||||||| ||||| ||||||||||||||||||||
Sbjct 29 ATGTTGTGTATGATGATGGTTTA-GTTTTCAAGGAGCTTGAACATCTGAACCTATGTGTG 87
Query 130 TGCAAAGAGGAGTCGTCGAATCTCCTTGGCCAGTTACTCAAAGATTCTCCTAACTTACGA 189
|| | |||||| |||||||||||| |||||||||||||||| ||||||||||||||||||
Sbjct 88 TGTAGAGAGGATTCGTCGAATCTCTTTGGCCAGTTACTCAAGGATTCTCCTAACTTACGA 147
Query 190 ATATTAGACATCTCTGTTGTGAAAGATCATGGAACAGATGAGCGTAATGGTATGGTTTCC 249
||||||||||||||||| ||||||||||||| ||| ||||||| |||||||| |||||||
Sbjct 148 ATATTAGACATCTCTGTAGTGAAAGATCATGCAACGGATGAGCTTAATGGTACGGTTTCC 207
Query 250 TGGAATCAACCGAATTTTGTTCCTGAATGCTTGTTGTCGAGTCTACAAACATTATTGTGG 309
||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||
Sbjct 208 TGGAATCAACCGAATTTCGTTCCTGAATGCTTGTTGTCGAGTCTACAAACATTAAAGTGG 267
Query 310 TCACGATACTTTGGGAGACAACAAGATAGAGATATTGCGGTTTATATCCTGAAAAACGCT 369
|||||||||| |||||||| |||||||||||||||||||||||||||| |||||||||||
Sbjct 268 TCACGATACTATGGGAGACCACAAGATAGAGATATTGCGGTTTATATCTTGAAAAACGCT 327
Query 370 TGTCACTTAAAGACAGCAACAATCTTGGCTGATACAGATGAACATGATGTTCCAAACCTT 429
||||||||||||| ||||||||||||||||||||||| |||||| ||||||||||||||
Sbjct 328 CGTCACTTAAAGACGGCAACAATCTTGGCTGATACAGAGGAACATTATGTTCCAAACCTT 387
Query 430 CAGATGATCAAGGAGTTGGCACTTTCTCTACGAACTTCA-GTCATATGCCAACTCGTATT 488
|| ||||||||||||||||||||||||| |||| ||||| | || |||||||||||||||
Sbjct 388 CAAATGATCAAGGAGTTGGCACTTTCTCCACGAGCTTCAAG-CACATGCCAACTCGTATT 446
Query 489 TGTTGAG 495
|||||||
Sbjct 447 TGTTGAG 453
> Ahg494109 jgi|Araly1|494109|fgenesh2_kg.7__3542__AT5G38580.1
Length=474
Score = 597 bits (323), Expect = 2e-170
Identities = 393/427 (92%), Gaps = 4/427 (1%)
Strand=Plus/Plus
Query 71 ATGATGGGTTTGATGATGG-TTATGTTTTCAACCAGCTTAAACATCTGAACCTATGTGTG 129
||| || || ||||||||| ||| |||||||| ||||| ||||||||||||||||||||
Sbjct 29 ATGTTGTGTATGATGATGGTTTA-GTTTTCAAGGAGCTTGAACATCTGAACCTATGTGTG 87
Query 130 TGCAAAGAGGAGTCGTCGAATCTCCTTGGCCAGTTACTCAAAGATTCTCCTAACTTACGA 189
|| | |||||| |||||||||||| |||||||||||||||| ||||||||||||||||||
Sbjct 88 TGTAGAGAGGATTCGTCGAATCTCTTTGGCCAGTTACTCAAGGATTCTCCTAACTTACGA 147
Query 190 ATATTAGACATCTCTGTTGTGAAAGATCATGGAACAGATGAGCGTAATGGTATGGTTTCC 249
||||||||||||||||| ||||||||||||| ||| ||||||| |||||||| |||||||
Sbjct 148 ATATTAGACATCTCTGTAGTGAAAGATCATGCAACGGATGAGCTTAATGGTACGGTTTCC 207
Query 250 TGGAATCAACCGAATTTTGTTCCTGAATGCTTGTTGTCGAGTCTACAAACATTATTGTGG 309
||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||
Sbjct 208 TGGAATCAACCGAATTTCGTTCCTGAATGCTTGTTGTCGAGTCTACAAACATTAAAGTGG 267
Query 310 TCACGATACTTTGGGAGACAACAAGATAGAGATATTGCGGTTTATATCCTGAAAAACGCT 369
|||||||||| |||||||| |||||||||||||||||||||||||||| |||||||||||
Sbjct 268 TCACGATACTATGGGAGACCACAAGATAGAGATATTGCGGTTTATATCTTGAAAAACGCT 327
Query 370 TGTCACTTAAAGACAGCAACAATCTTGGCTGATACAGATGAACATGATGTTCCAAACCTT 429
||||||||||||| ||||||||||||||||||||||| |||||| ||||||||||||||
Sbjct 328 CGTCACTTAAAGACGGCAACAATCTTGGCTGATACAGAGGAACATTATGTTCCAAACCTT 387
Query 430 CAGATGATCAAGGAGTTGGCACTTTCTCTACGAACTTCA-GTCATATGCCAACTCGTATT 488
|| ||||||||||||||||||||||||| |||| ||||| | || |||||||||||||||
Sbjct 388 CAAATGATCAAGGAGTTGGCACTTTCTCCACGAGCTTCAAG-CACATGCCAACTCGTATT 446
Query 489 TGTTGAG 495
|||||||
Sbjct 447 TGTTGAG 453
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 18429149487
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5