BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G38600.1
Length=2039
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494108 jgi|Araly1|494108|fgenesh2_kg.7__3541__AT5G38600.1 2233 0.0
Ahg475818 jgi|Araly1|475818|fgenesh2_kg.2__948__AT1G67210.1 619 2e-176
> Ahg494108 jgi|Araly1|494108|fgenesh2_kg.7__3541__AT5G38600.1
Length=1859
Score = 2233 bits (1209), Expect = 0.0
Identities = 1540/1688 (91%), Gaps = 70/1688 (4%)
Strand=Plus/Plus
Query 208 CCTTGAATCTGGGAATGGGTCACCTGAGGCTAATTCTTTAGTTGGTAATGATGAGAATGT 267
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 150 CCTTGAATCTGGGAATGGGTCTCCTGAGGCTAATTCTTTAGTTGGTAATGATGAGAACAT 209
Query 268 GAAAGGAAA--T---T-T-----A-GATTTGGATTTAACAGAAGAGAATTTGAGAATTGT 315
||||||||| | | | | |||||||||||||| ||||||||||||| || |||
Sbjct 210 GAAAGGAAATTTAGATGTGGAGAAGGATTTGGATTTAACGGAAGAGAATTTGACAACTGT 269
Query 316 CGGTGGCCAAGAGTCTGGGGAAATACTAACAGAGCAGGTTAGTGATGTGTTCAATGCGAG 375
| ||||||| ||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 270 CTGTGGCCAGGAGTCTGGGGAAATATTAACAGAGCAGGTTAGTGATGTGTTCAATGC--- 326
Query 376 TGTGGAAAGTGTGGCGGTAGATGAGAAATTGGGTATCCAAAAGGAGACACTAGTTCACAG 435
| ||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 327 ----G--AGTGTGGCGGTAGATGAGAAAGTGGGTATCCAAAAGGAGACACTAGTTCACAG 380
Query 436 CACCACTTTGGATGTTAGTTCTAAAGCGGGTGTTAAAAGACCCCGAACATCGTATGACGA 495
||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||
Sbjct 381 CACCACTTTGGATGTTAGTTCTAAAGCGGGTGTGAAAAGACCCCGAACATCGTTTGACGA 440
Query 496 ACAGCAGCCTACAGTCCATGTTACTTATAAGCACTTAACGAGAGCTAGTAAGCAGAAGCT 555
|||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 441 ACAGCAATCTACAGTACATGTTACTTATAAGCACTTAACGAGAGCTAGTAAGCAGAAGCT 500
Query 556 GGAAAGTTTATTACAGAAATGGTCAGAATGGGAGGCTGAAAATACGTCCTTGGCTCAGGA 615
|||||||||||||| | ||||||||||||||||||||||||| |||||||||| ||||||
Sbjct 501 GGAAAGTTTATTACGGCAATGGTCAGAATGGGAGGCTGAAAACACGTCCTTGGTTCAGGA 560
Query 616 TCAAGAACAACTATTCGAATCTGGTGAAGAGACATGTTTCCCCGCCATACGTGTTGGATT 675
||||| ||||| ||| ||||||||||||||||||| |||||| ||| |||||||||||||
Sbjct 561 TCAAGTACAACCATTAGAATCTGGTGAAGAGACATATTTCCCTGCCTTACGTGTTGGATT 620
Query 676 GCAGAAGACTTCGTCTGTGTCATTCTGGATCGACAACCAAACTGGTCATAAGCCGTTGGA 735
||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||
Sbjct 621 GCAGAAGACTTCGTCTGTGTCATTCTGGATCGACAACCAAACTGGTCCTAAGCCGCTGGA 680
Query 736 AGATTTTGTTCTAGTGGAAAGTAGCACCACTCCTCTTTATGACCGTAAATTTGCTATAGG 795
||| ||||| |||||||||||||||||||||||||| ||||||||||||||||| || ||
Sbjct 681 AGAGTTTGTCCTAGTGGAAAGTAGCACCACTCCTCTCTATGACCGTAAATTTGCAATTGG 740
Query 796 TTTAAATTCAGCAGATGGCTCAAGAAACGTGGAAGGGGGATTGGAGATTATTGATGATGA 855
|||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct 741 TTTAAATTCAGCAGATGGCTCAAGAAACTTGGAAGGGGGATTGGAGGTTATTGATGATGA 800
Query 856 TCCTCCACGTTGCTTCAATTGTGGTGGCTATAGTCATT-CTCTAAGAGAATGTCCAAGGC 914
|||||||||||||||||||||||||||||||||||||| || ||||||||||||||| ||
Sbjct 801 TCCTCCACGTTGCTTCAATTGTGGTGGCTATAGTCATTCCT-TAAGAGAATGTCCAAAGC 859
Query 915 CTTTTGATCGATCAGCGGTTAATAGTGCTCGGAAGCTTCAGAAATCTAAACGAAATCAGA 974
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 860 CTTTTGATCGATCAGCGGTTAATAGTGCTCGGAAGCTTCAGAAATCTAAACGAAATCAGA 919
Query 975 ATAGTAGTGGGCCCCGTCTACCATCAAGATATTATCAAAAAACTCAAACTGGAAAGTATG 1034
|||||||||||||||||||||||| ||||||||||||||| |||||| |||||||||||
Sbjct 920 GTAGTAGTGGGCCCCGTCTACCATCGAGATATTATCAAAAACCTCAAAGTGGAAAGTATG 979
Query 1035 ATGGCTTGAAACCCGGCACACTTGATGCAGAGACTCGTCAGCTTCTGAATCTGGGGGAAC 1094
|||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 980 ATGGCTTGAAACCCGGCACACTTGATGCAGAGACACGTCAGCTTCTGAATCTTGGGGAAC 1039
Query 1095 TAGACCCTCCTCCGTGGCTAAACAGAATGCGAGAAATTGGGTACCCACCAGGATACTTAG 1154
|||| |||||||| ||||| |||||||||||||| |||||||| || |||||||||||||
Sbjct 1040 TAGATCCTCCTCCATGGCTCAACAGAATGCGAGAGATTGGGTATCCTCCAGGATACTTAG 1099
Query 1155 CTCCAGAAGATGATCATTTGTCTGGAATAACTATATTCGGAGAAGAGGTGGAGACTCGGG 1214
||||||||||||| ||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct 1100 CTCCAGAAGATGACCATTTGTCTGGTATAACTATATTTGGAGAAGAGGTGGAGACTCGGG 1159
Query 1215 AGGAGA-TAGAGAGTGAGGATGGGGAAATTTTGGAAAAAGCAAACCATCCTCCAGAGCCA 1273
|||| | |||||||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 1160 AGGA-ATTAGAGAGTGAGGATGGGGAAATCTTGGAAAAAGCAAACCA---TCCAGAGCCA 1215
Query 1274 CAAATGAAAAAGACCGTCGAGTTTCCGGGAATTAACGCTCCCTTCCCAGAAAACGCAGAT 1333
|||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1216 CAAATGAAAAAGACAGTCGAGTTTCCGGGAATTAATGCTCCCTTCCCAGAAAACGCAGAT 1275
Query 1334 GAGTGGCTTTGGGAAGCTGCACCTTCACATAGGAACAGCAGCAGAAGCGGCCGATGGCAA 1393
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1276 GAGTGGCTTTGGGAAGCTGCACCTTCACATAGGAACAGCAGCAGAAGCGGCCGATGGCAA 1335
Query 1394 CAACAAAAAACAAGCAGAGGACATGATTACAGAGACGATGGTCCGCTCGGCGTTGAACCA 1453
||||||| ||||||||||||||||||||||||||| ||||||| ||| || |||||| ||
Sbjct 1336 CAACAAAGAACAAGCAGAGGACATGATTACAGAGATGATGGTCAGCTTGGTGTTGAATCA 1395
Query 1454 TCAAGTTATCCTCCAAGGTATGGCAGTAGATATGATTACGGGTATGGTTCAAACGAATAT 1513
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1396 TCTAGTTATCCTCCAAGGTATGGCAGTAGATATGATTACGGGTATGGTTCAAACGATTAT 1455
Query 1514 GGTTCTAGGTCAAGAAGTCCAGGCATAGATAGATCTTTATCCGAAAGAAGTAAGAGGGAT 1573
||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1456 AGTTCTAGATCAAGAAGTCCGGGCATAGATAGATCTTTATCCGAAAGAAGTAAGAGGGAT 1515
Query 1574 TATTCTTCTTACGATGCTGACTTCCgggagagagatagagatagagacaggaacagggat 1633
|||||||||||||||||||| ||||||||||||||||||||| || | | ||
Sbjct 1516 TATTCTTCTTACGATGCTGATTTCCGGGAGAGAGATAGAGAT--AG--A-G-AC------ 1563
Query 1634 agggatagagacagagactgggatagggacagggacagagactgcgatagagacagggac 1693
| | || || ||| ||||||||||| |||||||||| | | || ||||||
Sbjct 1564 A--G---GA-AC--AGA----GATAGGGACAGAGACAGAGACT--G---G-GATAGGGAC 1605
Query 1694 agggacGATCGTGATTGGTCTTATAGATTAAGCAGCAGGAGATAAATTGTGAGACTT-TT 1752
||||||||||||||||||||||||||||||| |||||||||||||||||||||| || ||
Sbjct 1606 AGGGACGATCGTGATTGGTCTTATAGATTAAACAGCAGGAGATAAATTGTGAGA-TTGTT 1664
Query 1753 AGCTGTGTATGTGTGTATGTGGAGGTTAGGGTT-CAAttt-t--t-t-tCTA-CATTCTC 1805
||||||||||||||||||||||||||||||||| || ||| | | | ||| | ||||
Sbjct 1665 AGCTGTGTATGTGTGTATGTGGAGGTTAGGGTTTCATTTTCTACTCTCTCTTTCCCTCTC 1724
Query 1806 TCT-T-TCCCTCTATGCTGTTGTATCATGTCCATGAAAGTGGAAGCTTTCTTCTAGTTAT 1863
||| | | | | || |||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1725 TCTATGTTGGTTT-TGTTGTTGTATCATGTCCATGAAAGTGGAAGCTTTTTTCTAGTTAT 1783
Query 1864 CAGACTTT 1871
||||||||
Sbjct 1784 CAGACTTT 1791
Score = 185 bits (100), Expect = 9e-46
Identities = 143/161 (89%), Gaps = 13/161 (8%)
Strand=Plus/Plus
Query 5 TCTTCCTTTTGAATCTCACAGATCTATCTACTATCGCCATTCTTGCTTCTTCCCTCCTCC 64
||||||||||||||||||||| | | ||||||||||| |||||||||| |||||||
Sbjct 1 TCTTCCTTTTGAATCTCACAG----A--T-CTATCGCCATTTTTGCTTCTTCACTCCTCC 53
Query 65 ATTGACTAAGGGTGT-TTTTTATGGGTGGTTTGTGAAATTGTTTTGAGGATATAAAGATT 123
||||||| |||| || ||||||||||||||||||||||||||||||||||||||| ||
Sbjct 54 ATTGACT-AGGG-GTATTTTTATGGGTGGTTTGTGAAATTGTTTTGAGGATATAATC-TT 110
Query 124 TCAATTTTGTTT-GAAAATGGAAACTGAGGATGTGCTTGAC 163
|||||||||||| |||| ||||| |||||||||||||||||
Sbjct 111 TCAATTTTGTTTTGAAA-TGGAAGCTGAGGATGTGCTTGAC 150
Score = 122 bits (66), Expect = 7e-27
Identities = 68/69 (99%), Gaps = 0/69 (0%)
Strand=Plus/Plus
Query 1916 TTTAAGGTTTTACTATTTTGGGTATGTCTTCACTTCTTAAAATGGAAAGTTAGTTACTCA 1975
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1791 TTTAAGGTTTTACTATTTTGGGTATGTCTTCACCTCTTAAAATGGAAAGTTAGTTACTCA 1850
Query 1976 TGTTTCTTA 1984
|||||||||
Sbjct 1851 TGTTTCTTA 1859
> Ahg475818 jgi|Araly1|475818|fgenesh2_kg.2__948__AT1G67210.1
Length=1484
Score = 619 bits (335), Expect = 2e-176
Identities = 737/927 (80%), Gaps = 44/927 (5%)
Strand=Plus/Plus
Query 444 TGGATGTTAGTTCTAAAGCGGGTGTTAAAAGACCCCGAAC-ATCGTATGACGAACAGCAG 502
|||||||||| |||||| | ||||||||||||||| |||| ||| | | ||||||||
Sbjct 326 TGGATGTTAGCTCTAAATCTGGTGTTAAAAGACCCAGAACAATC-TCTCTGGAACAGCAA 384
Query 503 CCTACAGTCCATGTTACTTATAAGCACTTAACGAGAGCTAGTAAGCAGAAGCTGGAAAGT 562
||| | ||||||||||||||||| |||||||| ||| ||||||||||||||||||||||
Sbjct 385 CCTTCTGTCCATGTTACTTATAAACACTTAACAAGAAATAGTAAGCAGAAGCTGGAAAGT 444
Query 563 TTATTACAGAAATGGTCAGAATGGGAGGCTGAA-AATACGTCCTTGGCTCAGGATCAAGA 621
||||||||| |||||||||||||||| || ||| || | ||||| || ||||||||||
Sbjct 445 TTATTACAGCAATGGTCAGAATGGGAAGCAGAACAAAAT-TCCTTCTCTGAGGATCAAGA 503
Query 622 ACAACTATTCGAATCTGGTGAAGAGACATGTTTCCCCGCCATACGTGTTGGATTGCAGAA 681
|||| || | ||||||||||| ||||||| ||| || || | ||||| |||||||||||
Sbjct 504 ACAAGTACTAGAATCTGGTGATGAGACATATTTTCCTGCTTTGCGTGTGGGATTGCAGAA 563
Query 682 GACTTCGTCTGTGTCATTCTGGATCGACAACCAAACTGGTCATAAGC-CGTTGGAAGATT 740
||| || ||||| ||||| ||| | ||| ||||||||||||| | | | || |||||
Sbjct 564 GACATCATCTGTATCATTTTGGTTTGACTACCAAACTGGTCACA-GTTC-TTCGAAGAAG 621
Query 741 T-TGTTCTAGTGGAAAGTAGCACCACTCCTCTTTATGACCGTAAATTTGCTATAGGTTTA 799
| ||||| ||||||||||||||| |||||||||||| | ||| |||| | || ||||||
Sbjct 622 TCTGTTCCAGTGGAAAGTAGCACTACTCCTCTTTATAATCGTGGATTTACAATTGGTTTA 681
Query 800 AATTCAGCAGATGGCTCAAGA-AACGTGGAAGGGGGATTGGAGATTATTGATGATGATCC 858
|||||| | ||| |||| | ||| ||||||| || |||||||||||||||||| ||
Sbjct 682 GATTCAGGTGGTGGTTCAA-ATAACTTGGAAGGAGGCTTGGAGATTATTGATGAT---CC 737
Query 859 TCCACGTTGCTTCAATTGTGGTGGC-TATAGTCATTCTC-TAAGAGAATGTCCAAGGCCT 916
||||||||||||||||||||||| | || |||||||| | | ||||||||||||| ||||
Sbjct 738 TCCACGTTGCTTCAATTGTGGTG-CATACAGTCATTC-CATTAGAGAATGTCCAAAGCCT 795
Query 917 TTTGATCGATCAGCGGTTAATAGTGCTCGGAAGCTTCAGAAAT-CTAAACGAAATCAGAA 975
|||||||||||||| |||| || |||||||| | || ||| | ||| |||| ||||
Sbjct 796 TTTGATCGATCAGCAGTTAGTAATGCTCGGAGGGAACATAAAAGCAAAA-GAAACCAGAC 854
Query 976 TAGTAGTGGGCCCCGTCTACCATCAAGATATTATCAAAAAACTCAAACTGGAAAGTATGA 1035
| | ||| |||||||||| || |||||||||| | ||||| |||||| |||||
Sbjct 855 T--TC-TGGATCCCGTCTACCGTCCCGATATTATCAGAGCCCTCAAGGTGGAAAATATGA 911
Query 1036 TGGCTTGAAACCCGGCACACTTGATGCAGAGACTCGTCAGCTTCT-GAATCTGGGGGAAC 1094
||||||||| || ||| |||||||||||||||| ||| | ||||| | ||| |||||
Sbjct 912 TGGCTTGAAGCCTGGCTCACTTGATGCAGAGACGCGTAAACTTCTTGG-TCTAAAGGAAC 970
Query 1095 TAGACCCTCCTCCGTGGCTAAACAGAATGCGAGAAATTGGGTACCCACCAGGATACTTAG 1154
| || |||||||| ||||| |||||||||||||| ||||| || ||||||||||| || |
Sbjct 971 TCGATCCTCCTCCATGGCTTAACAGAATGCGAGAGATTGGATATCCACCAGGATATTTGG 1030
Query 1155 CTCCAGAAGAT---GATCATTTGTCTGGAATAACTATATTCGG--AG-AAGAGG-TGGAG 1207
| |||||| ||| || | || ||||| |||||||| || || ||||| | ||
Sbjct 1031 GTGTAGAAGACAACGATGATCTCTCGGGAATCACTATATTTGGTGAGGAAGAGACTAAAG 1090
Query 1208 ACTCGGGAGGAGATAGAGAGTGAGGATGGGGAAATTTTGGAA-AAA--GCAAACCATCCT 1264
| || || || || ||| |||||| || ||||| |||||| ||| |||| || | |
Sbjct 1091 AAGAGGAAGAAGTTA-AGACTGAGGAAGGTGAAATCTTGGAAGAAAAAGCAAGCC--C-T 1146
Query 1265 CCAGAGCCACA-AATGAAAAAGACCGTCGAGTTTCC-GGGAATTAACGCTCCCTTCCCAG 1322
| ||||||| | || || || ||| || | |||||| |||| ||||||| ||| | ||||
Sbjct 1147 CAAGAGCCA-AGAAGGATAATGACAGTTGGGTTTCCCGGGA-TTAACGCACCCATACCAG 1204
Query 1323 AAAACGCAGATG-AGTGGCTTTGGGAA 1348
||||||||||| | ||||| ||||||
Sbjct 1205 AAAACGCAGATTCA-TGGCTATGGGAA 1230
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76675663185
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5