BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G38610.1
Length=769
Score E
Sequences producing significant alignments: (Bits) Value
Ahg947978 jgi|Araly1|947978|scaffold_704207.1 826 0.0
> Ahg947978 jgi|Araly1|947978|scaffold_704207.1
Length=633
Score = 826 bits (447), Expect = 0.0
Identities = 570/628 (91%), Gaps = 13/628 (2%)
Strand=Plus/Plus
Query 2 TAACTAGAAAAACAATGAAGCTCTCTCAAGTCTTCTACATTATCTTCTTATTCTTCCTTG 61
|||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 7 TAACTAAAAAAACAATGAAGCTCTCTCAAGTTTTCTACATTATCTTCTTATTCTTCCTTG 66
Query 62 TCTCACAAGTAAAGTCAACGTCCGATATGATCGACCAAACCTGCAAATCTTGCGCAGCCA 121
||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct 67 TCTCACAAGTAAACTCAACGTCCGATATGATCGAACAAACCTGCAAATCTTGCGCAGCGA 126
Query 122 AATCCACGATCTTCGATTACAACTTCTGTGtctcctctctcaacaactctccaatagctc 181
|||||||||||||| |||||||||||||||||||||||||||||||||| ||||| | ||
Sbjct 127 AATCCACGATCTTCAATTACAACTTCTGTGTCTCCTCTCTCAACAACTCACCAATCGATC 186
Query 182 ttccttctccgaccaatctttcttctcttGCCCTTGTTCCAATGCTCCAAGCTCTCGACA 241
|||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct 187 TTCCTTCTCCGACCAATCTTTCTTCTCTTGCCCTAGTTCCAATGCTTCAAGCTCTCGACA 246
Query 242 ACGCCACCGCAACAGCTTCCACCATTCAACAGCTTCTTATAAGCGACGACGACGGTAGTT 301
||||||| || || ||| ||||||||||||||||||| ||||| || ||||||||| |||
Sbjct 247 ACGCCACTGCGACCGCTACCACCATTCAACAGCTTCTGATAAGTGAGGACGACGGTGGTT 306
Query 302 TCCGCAGTGCTTGCCTCCGTGACTGCCTCGAGCTTTACGAGGACGC-GACGGATAGATTG 360
||||| |||||||||| ||||||||||| ||||||||||||||||| | ||||||||||
Sbjct 307 TCCGCGGTGCTTGCCTTCGTGACTGCCTTGAGCTTTACGAGGACGCTG-CGGATAGATTA 365
Query 361 GAGGAGGCAGTGAGAGTTTTTATTACAAGGAAAGAGTTAGGTACGGTTAATGTGATGGTA 420
|||||||||||||||||||||| |||||||||||||||||| ||||| |||||||||||
Sbjct 366 GAGGAGGCAGTGAGAGTTTTTACTACAAGGAAAGAGTTAGGGACGGTGAATGTGATGGTT 425
Query 421 AGCGCCGCCATGGAATCCGCCGTGACTTGTGAGAATGGATTCAGGGAAAGAGACGACGGT 480
| | |||||||||||||||||||||| |||||| |||| || ||||| ||||| | |
Sbjct 426 ACCACCGCCATGGAATCCGCCGTGACGTGTGAGGATGGGTTTAGGGATAGAGA--A-G-- 480
Query 481 GACGGTGGTGGTGGAGGTGTGACGACGTGGACGTCTCCTATTGGT-GATGAGAATCACAA 539
||||||||||||| || || ||||||||| ||||| |||||| | ||||||| ||||
Sbjct 481 -ACGGTGGTGGTGG---TGCGATGACGTGGACATCTCCAATTGGTAG-TGAGAATTACAA 535
Query 540 ATTGTTTGAGTTTGGTCAGATTGCTCTTTGTATATTCAATATGCTCTCTTCTTCTGTCAC 599
|||||| | || ||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 536 GTTGTTTAAATTGGGTCAGATTGCTCTTTGTATAATCAATATGCTCTCTTCTTCTGTCAC 595
Query 600 ATCTCTATCTTTCTAAATCGTTTTCAAT 627
|||||||||||||||||||||||||||
Sbjct 596 CTCTCTATCTTTCTAAATCGTTTTCAAT 623
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28363450248
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5