BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G38630.1
Length=1516
Score E
Sequences producing significant alignments: (Bits) Value
Ahg947977 jgi|Araly1|947977|scaffold_704206.1 1201 0.0
Ahg494105 jgi|Araly1|494105|fgenesh2_kg.7__3538__AT5G38640.1 641 0.0
> Ahg947977 jgi|Araly1|947977|scaffold_704206.1
Length=734
Score = 1201 bits (650), Expect = 0.0
Identities = 708/736 (96%), Gaps = 3/736 (0%)
Strand=Plus/Plus
Query 129 CTCGCATTTTCTGGGC-TTAGTATGGCGGTTCCGGTGCTGGGTGGATTTCCGATCTTCAT 187
||| || ||||||||| | || |||| ||||||||||||||||||||| |||||||||||
Sbjct 1 CTCTCA-TTTCTGGGCATAAG-ATGGTGGTTCCGGTGCTGGGTGGATTCCCGATCTTCAT 58
Query 188 GGTAGTGAGAGTTTTGGGTTTCATCATCGCGGCTTTGGTTTTGACATGGACTGTTCATTA 247
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 59 GGTAGTGAGAGTTTTGGGTTTCATCATCGCGGCTTTGGTTTTGACATGGACTGTTCATTA 118
Query 248 CAGAGGAGGCTTAGCTCTTTCTTCTGATAACAAAGATCACATCTTTAATGTTCATCCAGT 307
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 119 CAGAGGAGGCTTAGCTCTTTCTTCTGATAACAAAGATCACATCTTTAATGTCCATCCAGT 178
Query 308 GATGATGGTGATTGGACTCATACTCTTCAATGGAGAAGCTATGTTAGCATATAAGTCAGT 367
||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 179 GATGATGGTGATTGGACTCATTCTCTTCAATGGAGAAGCAATGTTAGCATATAAGTCAGT 238
Query 368 TCAAGGTACAAAGAACTTGAAAAAACTGGTTCATCTTACACTACAACTCACAGCATTTAT 427
||||||||||||||||||||| ||| |||||||||||||||||||||||||||| |||||
Sbjct 239 TCAAGGTACAAAGAACTTGAAGAAATTGGTTCATCTTACACTACAACTCACAGCTTTTAT 298
Query 428 TCTAAGCCTGATCGGAGTGTGGGCTGCTCTCAAGTTCCATATTGACAAAGGGATCGAAAA 487
|||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 299 TCTAAGCCTGATCGGAGTATGGGCGGCTCTCAAGTTCCATATTGACAAAGGGATCGAAAA 358
Query 488 TTTCTACAGTCTCCATTCGTGGCTCGGCCTTGCTTGCCTCTTTCTCTTTGCATTCCAGTG 547
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 359 TTTCTACAGTCTCCATTCGTGGCTCGGCCTTGCTTGCCTCTTTCTCTTTGCATTCCAGTG 418
Query 548 GGCTGCAGGGTTTGTGACTTATTGGTACCCGGGTGGTTCAAGAAACAGCAGAGCCAGTTT 607
|||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||
Sbjct 419 GGCTGCAGGGTTTGTGACGTATTGGTACCCGGGTGGTTCAAGAAACAGCCGAGCCAGTTT 478
Query 608 GATGCCATGGCATGTGTTCTTAGGGATTTCCATATATGCATTGGCGTTGGTGACTGCAAC 667
||||||||||||||| |||||||| |||| |||||||||||||||||| |||||||||||
Sbjct 479 GATGCCATGGCATGTATTCTTAGGAATTTACATATATGCATTGGCGTTAGTGACTGCAAC 538
Query 668 CACAGGGATACTTGAGAAGGTGACGTTCCTGCAAGTGAATCAAGTGATAACTCGGTATTC 727
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 539 CACAGGGATACTTGAGAAGGTGACGTTCCTGCAAGTGAATCAGGTGATAACTCGGTATTC 598
Query 728 CACAGAGGCAATGTTAGTCAACACAATGGGCGTTCTAATCCTTATTCTTGGCGGTTTCGT 787
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 599 CACAGAGGCAATGTTAGTCAACACAATGGGCGTTCTAATTCTTATTCTTGGCGGTTTTGT 658
Query 788 GATACTCGGTGTGGTTACTCCGGTCAGTGGCAAGGATCAAGTTCTCACACAATAGAGTAA 847
|||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||
Sbjct 659 GATACTCGGTGTGGTTACTCCGGTCAATGGCAAGGATCATGTTCTCACACAATAGAGTAA 718
Query 848 ACCCTCGAAAAGATCT 863
| ||||||| ||||||
Sbjct 719 AACCTCGAATAGATCT 734
> Ahg494105 jgi|Araly1|494105|fgenesh2_kg.7__3538__AT5G38640.1
Length=2297
Score = 641 bits (347), Expect = 0.0
Identities = 387/406 (95%), Gaps = 4/406 (1%)
Strand=Plus/Minus
Query 1010 ACTGAACCCAACAAAAATTGGCATAGAATCTGAGAAAGATTTGTATCAACCTCCATGAGA 1069
|||||||| || ||||||||||||||||||||||||||||||||||||| ||| ||||||
Sbjct 2297 ACTGAACCAAAAAAAAATTGGCATAGAATCTGAGAAAGATTTGTATCAAACTCTATGAGA 2238
Query 1070 AGGGAGAGTAAGAGAAGCCTCACTCATACATCACAGACAAAGAAAAACATCACCGATATC 1129
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 2237 AGGGAGAGTAAGAGAAGCCTCACTCATACATCACAGACAAAAAAAAACATCACCGATATC 2178
Query 1130 GATAAAATCTTCCCGGAGAGGCGGATGATGAATCGCACTCTTCACAGAGTCAAAAGTTTC 1189
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 2177 GATAAAATCTTCCCGGAGAGGCGGATGATGAATCGCACTCTTCACAGAGTCAAAAGTTAC 2118
Query 1190 TAAAAACAAGTCAAGGCCaaaaaaaaTGAACCCGGTACTCAGGAAAAGAAGCGGATGAGG 1249
|||||||| |||||||||||||||| |||| |||||||||||||||||||||||||||||
Sbjct 2117 TAAAAACATGTCAAGGCCAAAAAAA-TGAATCCGGTACTCAGGAAAAGAAGCGGATGAGG 2059
Query 1250 GGAGGCAGTGCCGGTAGTTATTCTAT-CTGGGTTGTGATGAGAAGAGCCTGAGCTAGAGG 1308
| |||||||||| ||||||||||||| | ||||||||| |||||||||||||||||||||
Sbjct 2058 G-AGGCAGTGCCAGTAGTTATTCTATGC-GGGTTGTGACGAGAAGAGCCTGAGCTAGAGG 2001
Query 1309 AGGGGGTTGGAGAAGAAGAGCTTTCGCAAAAATGAGCTTTGCTTAGACAAGCAAGTGTTC 1368
| |||||||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 2000 AAGGGGTTGGAGAAGAAGAGCTTTCGCAAAAACGAATTTTGCTTAGACAAGCAAGTGTTC 1941
Query 1369 TTTCTGATATTCTCTCACGATGACAGGCACACTTGTGGGAGGTACC 1414
|||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1940 TTTCTGATATTCTCTCACGATGACAGGCACGCTTGTGGGAGGTACC 1895
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56754465050
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5