BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G38650.1
Length=789
Score E
Sequences producing significant alignments: (Bits) Value
Ahg947975 jgi|Araly1|947975|scaffold_704204.1 673 0.0
Ahg925966 jgi|Araly1|925966|scaffold_201527.1 368 3e-101
> Ahg947975 jgi|Araly1|947975|scaffold_704204.1
Length=466
Score = 673 bits (364), Expect = 0.0
Identities = 413/437 (95%), Gaps = 2/437 (0%)
Strand=Plus/Plus
Query 107 AAGAGGAGAGATGGAGTCGCAGAAGAAGATAGCTCATGAGATCGGAGGTATGAAGAACGA 166
||||||||| ||||| ||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 11 AAGAGGAGAAATGGATTCGGAGAAGAAGATAGCTCATGAGATCGGAGGTATGAAGAACGA 70
Query 167 TGCTCTTCGCTTTGGTCTTCACGGCGTTAAGAGCGATATCCTTAGATCTCATCCTCTCGA 226
|||||||||||||||||||||||| ||||||||||||||| || ||||||| ||||||||
Sbjct 71 TGCTCTTCGCTTTGGTCTTCACGGTGTTAAGAGCGATATCATTGGATCTCACCCTCTCGA 130
Query 227 AACGGCTTACGAATCTGGGAAGCAATCACAAGAAGAAATGAAGAGGAGAGTGATCACGCA 286
| |||| ||||||||||| ||| |||||||||||||||||||||||| |||||| |||||
Sbjct 131 ATCGGCCTACGAATCTGGAAAGAAATCACAAGAAGAAATGAAGAGGAAAGTGATTACGCA 190
Query 287 TACTTATGGAGCTGCTCTTCCTTTGAAGATGGATCTTGATAGACAAATCCTTTCTCGGTT 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 191 TACTTATGGAGCTGCTCTTCCTTTGAAGATGGATCTTGATAGACAAATCCTTTCTAGGTT 250
Query 347 TCAGAGACCTCCTGGACCAATTCCTTCATCAATGCTTGGCCTTGAAGTCTACACAGGAGC 406
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 251 TCAGAGACCTCCTGGACCAATTGCTTCATCAATGCTTGGCCTTGAAGTCTACACAGGAGC 310
Query 407 TCTAGATAATTTTGGTTTTGAGGATTACTTGAATGATCCTCGCGAATCCGAGACGCTGAA 466
| ||||| ||||||||||||||||||||||||||||||| || ||||||||||| || ||
Sbjct 311 TATAGATGATTTTGGTTTTGAGGATTACTTGAATGATCCCCGTGAATCCGAGACACTCAA 370
Query 467 ACCAGTAGACTTTCACCACGGGATGGAAGTTCGGCTTGGTCTCTCCAAAGGCCCAGCTTC 526
||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||
Sbjct 371 ACCAGTAGACTTTCACCACGGAATGGAAGTTCGGCTTGGTCTCTCCAAAGGCCCAG-TTC 429
Query 527 CCC-AAGTTTCATGTAG 542
||| |||||||||||||
Sbjct 430 CCCCAAGTTTCATGTAG 446
> Ahg925966 jgi|Araly1|925966|scaffold_201527.1
Length=470
Score = 368 bits (199), Expect = 3e-101
Identities = 369/450 (82%), Gaps = 16/450 (4%)
Strand=Plus/Plus
Query 100 GAAGAGGAAG-AGGAGAGATGGAGTCGCAGAAGAAGATAGCTCATGAGATCGGAGGTATG 158
||||| |||| || | | |||||||| |||||||||||||||||||||||||| ||| |
Sbjct 4 GAAGAAGAAGTAGAACA-ATGGAGTCTCAGAAGAAGATAGCTCATGAGATCGGTGGTGTT 62
Query 159 AAGAACGATGCTCTTCGCTTTGGTCTTCACGGCGTTAAGAGCGATATCCTTAGATCTCAT 218
||||| || ||||| || |||||||| ||||||||||| ||||| ||| | |||||||
Sbjct 63 AAGAATGACGCTCTCCGATTTGGTCTCCACGGCGTTAAAAGCGACATCATCGGATCTCAC 122
Query 219 CCTCTCGAAACGGCTTACGAATCTGGGAAGCAATC-ACAAGAAGAAATGAAGAGGA-GAG 276
|| || ||| | |||||||||||| ||| |||| | |||| || ||||||||| | |
Sbjct 123 CCACTTGAATCCTCTTACGAATCTGAAAAGAAATCGA-AAGAGGAGTTGAAGAGGACG-G 180
Query 277 TGATCACGCATACTTA-TGGAGCTGCTCTTCCTTTGAAGATGGATCTTGATAGACAAATC 335
| || ||||| | || ||| |||| ||||| |||||||||||| | ||||| |||||
Sbjct 181 TCATTGCGCATGCCTACGGGA-CTGCACTTCCGTTGAAGATGGATATGGATAGGCAAATT 239
Query 336 CTTTCTCGGTTTCAGAGACCTCCTGGACCAATTCCTTCATCAATGCTTGGCCTT-GAAGT 394
|| || |||||||||||||||||||||||||||| || || |||||||| || |||||
Sbjct 240 CTCTCAAGGTTTCAGAGACCTCCTGGACCAATTCCGTCGTCGATGCTTGG-TTTAGAAGT 298
Query 395 CTACACAGGAGCTCTAGATAATTTTGGTTTTGAGGATTACTTGAATGATCCTCGCGAATC 454
||||||||||||| | ||| | ||||||||||||||||||||||||||||| || || ||
Sbjct 299 CTACACAGGAGCTGTGGATGACTTTGGTTTTGAGGATTACTTGAATGATCCCCGTGATTC 358
Query 455 CGAGACGCTGAAACCAGTAGACTTTCACCACGGGATGGAAGTTCGGCTTGGTC-TCTCCA 513
|||||| | || || |||||||| |||||||||||||||||||| ||||| | |||| |
Sbjct 359 CGAGACATTCAAGCCGGTAGACTTCCACCACGGGATGGAAGTTCGTCTTGG-CATCTC-A 416
Query 514 AAGGC-CCAGCTTC-CCCAAGTTTCATGTA 541
|||| || | || |||||||||||||||
Sbjct 417 AAGGGACCGG-TTAACCCAAGTTTCATGTA 445
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29125908588
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5