BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G38660.1
Length=1092
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494103 jgi|Araly1|494103|fgenesh2_kg.7__3536__AT5G38660.1 1393 0.0
Ahg915946 jgi|Araly1|915946|Al_scaffold_0008_697 130 2e-29
> Ahg494103 jgi|Araly1|494103|fgenesh2_kg.7__3536__AT5G38660.1
Length=929
Score = 1393 bits (754), Expect = 0.0
Identities = 878/937 (94%), Gaps = 11/937 (1%)
Strand=Plus/Plus
Query 21 AAAGATACACagagagagaagagaagaggaagaaAATGGGATCTATAACGGTAGCTCCGG 80
||||||||||||||||||||||||||| | ||||||||||| ||||| ||| ||||||||
Sbjct 1 AAAGATACACAGAGAGAGAAGAGAAGAAG-AGAAAATGGGAACTATATCGGCAGCTCCGG 59
Query 81 GAACCACCGTCTTATTCTCCAGTCGGCGGC-T-AGA-TCTTTGCGGTCGTCGCCATGAGA 137
||||||||||||||||||||| || || | | | | | ||| | ||||||||||||||
Sbjct 60 GAACCACCGTCTTATTCTCCAATCTCCGTCGTGACAGTTTTTACAATCGTCGCCATGAGA 119
Query 138 ATCTATCCGTCGTTTCGTCCTCACAACCGTCTCTGATGCCAAAGCAGAGATGGCTTTATA 197
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 ACCTATCCGTCGTTTCGTCCTCACAACCGTCTCTGATGCCAAAGCAGAGATGGCTTTACG 179
Query 198 TTCCCGAGACGAGGTTGAAAAGAGAGGTTTTAAAGCTCGATGTCGTCGGAAGAGCTGCTG 257
|||||||||||||||||| ||||||| || ||||||||||| || | | |||||||||||
Sbjct 180 TTCCCGAGACGAGGTTGAGAAGAGAGATTCTAAAGCTCGATTTCATTGCAAGAGCTGCTG 239
Query 258 ATTCCACGAGCTCTTCTCCATCAGTAGCTTCCGGTGATAGAACCTTAATTCCTGATGATG 317
|||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||
Sbjct 240 ATTCCACGAGCTCTTCTCCATCAGTAGCTTCCGGTGATAGAACCCTAATCCCTGATGATG 299
Query 318 AATTCACTTTAGCCAAGATTTCATTTGGTGTTATTGGGCTAGGTCTCGGGGTTTCGCTAC 377
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 AATTCACTTTAGCCAAGATTTCATTTGGTGTTATTGGGCTAGGTCTCGGGGTTTCGCTAC 359
Query 378 TCTCGTATGGTTTTGGGGCCTATTTTACTATCCTTCCTGGAACTGAGTGGTCTGCTATAA 437
||||||||||||||||||| ||||||| ||||||||||||| ||||||||||||||||||
Sbjct 360 TCTCGTATGGTTTTGGGGCTTATTTTAATATCCTTCCTGGATCTGAGTGGTCTGCTATAA 419
Query 438 TGCTAACATATGGATTTCCCCTTTCTATTATCGGAATGGCTCTTAAGTACGCAGAACTCA 497
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 420 TGCTAACATATGGATTTCCCCTTGCTATTATCGGAATGGCTCTTAAGTACGCAGAACTCA 479
Query 498 AACCAGTTCCTTGCTTGAGCTATTCGGATGCGGTGAAGCTTAGAGAAAGCTGTGCTACTC 557
|||||||||||||||||||||| || ||||| || |||||||||||||||||||| ||||
Sbjct 480 AACCAGTTCCTTGCTTGAGCTACTCAGATGCTGTAAAGCTTAGAGAAAGCTGTGCCACTC 539
Query 558 CTATTTTAACGCAGGTTAGAAATGATGTCACGAGATACCGTTATGGAGATGAACAACATT 617
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 CTATTTTAACGCAGGTTAGAAATGATGTCACGAGATACCGTTATGGAGATGAACAACATT 599
Query 618 TGGAAGAAGCACTAAAACGAATCTTTCAATATGGGCTGGGAGGAGGAATCCCGAGACGTA 677
|||||||||| ||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 600 TGGAAGAAGCGCTAAAACGAATCTTTCAATATGGACTGGGAGGAGGAATCCCAAGACGTA 659
Query 678 GTGCACCTATCTTACAGCTGATAAGGGAAGAGGTCCTGACCGATGGTCGGTACTGTGTGG 737
|||||||||||||||||||||||||||| |||||||||||||||||||| |||||| |||
Sbjct 660 GTGCACCTATCTTACAGCTGATAAGGGAGGAGGTCCTGACCGATGGTCGTTACTGTCTGG 719
Query 738 TCCTTGTATTTGAGGCCAAAGCTCTGACGTTGTCAGATTTTGAAAAAAGACAGGCGAAAT 797
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 720 TCCTTGTATTTGAGGCCAAAGCTCTGACGTTGTCAGATTTTGAGAAAAGACAGGCGAAAT 779
Query 798 TCACTTCCTTCTTTGGACCAAACATCACGGCAGAAGTCGGTAAAGGAGAAAGTGAGAATC 857
||||||| |||||||||||||||||||| |||||||| |||||||||||||| |||||||
Sbjct 780 TCACTTCTTTCTTTGGACCAAACATCACTGCAGAAGTTGGTAAAGGAGAAAGAGAGAATC 839
Query 858 TCTATGAAGTAAGACTGATTTCCAACCTCTCCACCAACTCTGTATCTTCTACCTCTTGAA 917
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 840 TCTATGAAGTAAGACTGATTTCCAACCTCTCCACCAACTCTGTATCTTCTACCGCTTGA- 898
Query 918 CATAGACAATCATGTATACGGCGACGTTTTCAGTCAA 954
|| | ||||||||||||| |||||||||| |||
Sbjct 899 CA-A-----TCATGTATACGGCAACGTTTTCAGACAA 929
> Ahg915946 jgi|Araly1|915946|Al_scaffold_0008_697
Length=192
Score = 130 bits (70), Expect = 2e-29
Identities = 83/89 (93%), Gaps = 2/89 (2%)
Strand=Plus/Plus
Query 247 AAGAGCTGCTGATTCCACGAGCTCTTCTCCATCAGTAGCTTCCGGTGATAGAACCTTAAT 306
|||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 9 AAGAGCTGCTGATTCCACGAGCTCTTCTCCATCAGTAGCTTCCGGTGATAGAGCCCTAAT 68
Query 307 TCC-TGATGATGAATTCACTTTAGCCAAG 334
|| |||||||||||||||| |||||||
Sbjct 69 -CCATGATGATGAATTCACTCAAGCCAAG 96
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40677152439
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5