BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G38670.1
Length=876
Score E
Sequences producing significant alignments: (Bits) Value
Ahg330601 jgi|Araly1|330601|fgenesh1_pm.C_scaffold_7002828 1074 0.0
Ahg937812 jgi|Araly1|937812|scaffold_502003.1 224 8e-58
Ahg921494 jgi|Araly1|921494|scaffold_102775.1 191 8e-48
Ahg928901 jgi|Araly1|928901|scaffold_301358.1 182 5e-45
Ahg317684 jgi|Araly1|317684|fgenesh1_pm.C_scaffold_3000700 58.4 9e-08
> Ahg330601 jgi|Araly1|330601|fgenesh1_pm.C_scaffold_7002828
Length=879
Score = 1074 bits (581), Expect = 0.0
Identities = 792/890 (89%), Gaps = 29/890 (3%)
Strand=Plus/Plus
Query 1 ATGCAGTCGCAAACGAACCCTAATCCGTCACTTCCCGATGATTTGATATTGAGCTGCGTC 60
|||| | |||| ||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGCCGCCGCAGTCGAACCCGAATCCGTCACTTCCCGATGATTTGATATTGAGCTGCGTC 60
Query 61 GCACGGGTCTCAAGATTGTATTATCCGGCTCTCTCCCTCGTCTCCAAGAGCTTTCGATCT 120
||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 61 GCACGGGTCTCAAAATTGTATTATCCGACTCTCTCCCTCGTCTCCAAGAGCTTTCGATCT 120
Query 121 CTCATAGCTTCACCGGAGCTTTACAAGACCCGATCACTCTTGGACCGCACGGAGAGTTGT 180
||| |||||||||| ||| ||||||||||||||||||||||||||||||| |||||||||
Sbjct 121 CTCCTAGCTTCACCAGAGATTTACAAGACCCGATCACTCTTGGACCGCACCGAGAGTTGT 180
Query 181 CTCTA-------T--ATTCTGTATTGCACGTCTAACACGTGGCACGAGGGCCCTAGGTTG 231
||||| | |||||| ||||||||||||||||||||| ||||||||||| |||
Sbjct 181 CTCTATGTCGTCTCGATTCTGGATTGCACGTCTAACACGTGGCGTGAGGGCCCTAGCTTG 240
Query 232 CGGGTGAAGCTAATGTCATGTACTGCTTGCGTTCTTGATGAAAAGATATATGTATCAGGA 291
||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||
Sbjct 241 CGGGTGAAGCTAATGTCATGTGCTGCTTGCGTTCTTGATGGAAAGATATATGTATCAGGA 300
Query 292 AGATGCAAAGATGGCGACTCCATGACGTTCCAAGTGTTTGACACAAATACACAAACTTGG 351
|| ||| |||||| ||| ||| |||||||||||||||||||||||||||||||||||||
Sbjct 301 AGCTGCGAAGATGACGATTCCGCGACGTTCCAAGTGTTTGACACAAATACACAAACTTGG 360
Query 352 GATCCTT-TGTCTGTCCCTTGCAGCGAGACAAAACACGACTTTCACTACAAAATCGTAAG 410
|||| || || | |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 361 GATC-TTGTGCCCATCCCTTGCAGCGAGACAAAACACGACTTTCACTACAAAATCGTATG 419
Query 411 GTTTGACGGAAAATTGCACCTGGTGAGCTA-CAAAGGTGTGGATGCTTACAATTCCAAGG 469
||||||||||| |||||| ||||||| || |||||||||| ||||||||||| ||||||
Sbjct 420 CTTTGACGGAAAGTTGCACATGGTGAG-TAACAAAGGTGTGAATGCTTACAATACCAAGG 478
Query 470 AAGGTAGATGGGACCTGGTT-ACACCAAGCATAGAACATAATAAGTATTTATATGATTGT 528
|||||||||||||| ||||| | |||||||| ||||||| ||||||||||||||||| |
Sbjct 479 AAGGTAGATGGGACGTGGTTGA-ACCAAGCAGAGAACATTTTAAGTATTTATATGATTCT 537
Query 529 TATCGCAATATAGGGAATGTTTGGTACACTATTGTAAAAGGA--GATATCTCAACGTCCG 586
||| |||| |||||||||||||||||| || || |||||||| | | |||||| || |
Sbjct 538 TATTGCAAAATAGGGAATGTTTGGTACTCTGTTTTAAAAGGACCG-T-TCTCAAAGTTCA 595
Query 587 TATGGTGGTATCACAGTGAGGAAAGAG-AGTGGAGAGA-CTTGAAGGGTATGGTAGGATT 644
|||||| || ||| |||| |||||| | |||||||| || ||||||||||| ||||||
Sbjct 596 TATGGTA-TAACAC--TGAGCAAAGAGTA-TGGAGAGAACT-GAAGGGTATGGAAGGATT 650
Query 645 ACCTAAGTTCCCTATTGATGCTTGTCTTAGAATGGTTGATTATGGTGGGAAGATGGCAGT 704
||||||||||||| ||||||||||| ||||| ||| |||||||||||||||||||| ||
Sbjct 651 ACCTAAGTTCCCTTTTGATGCTTGTGTTAGATTGGCTGATTATGGTGGGAAGATGGTGGT 710
Query 705 TTTGTGGGACGACTATTTGCCTGGGCGCCGAAAGAAGATGATTTGGTGTGCGGAGATTGC 764
||||||||| || ||||| ||||| || |||||||||||||||||||||||||||||||
Sbjct 711 TTTGTGGGATGAGTATTTTCCTGG-CG--GAAAGAAGATGATTTGGTGTGCGGAGATTGC 767
Query 765 GCTTGAAAGACGCGGAAGTTTGGAAATATGGGGAAAAGTTGAATGGTTTGCTCATGTGCT 824
|||||||||||||||||||||||||| ||||| ||||||||||||||| |||| ||||
Sbjct 768 ACTTGAAAGACGCGGAAGTTTGGAAATTTGGGGGGAAGTTGAATGGTTTGATCATATGCT 827
Query 825 TACAGTCCCTAGACAATATGAATTCGTCAAGGTTCTTGCTGCTACTCTTT 874
|||||||||| |||| ||||||||||||||||||||| ||| |||| |||
Sbjct 828 TACAGTCCCTGGACATTATGAATTCGTCAAGGTTCTTTCTGTTACTGTTT 877
> Ahg937812 jgi|Araly1|937812|scaffold_502003.1
Length=1200
Score = 224 bits (121), Expect = 8e-58
Identities = 161/180 (89%), Gaps = 4/180 (2%)
Strand=Plus/Plus
Query 9 GCAAACGAACCCTAA-TCCGTCACTTCCCGATGATTTGATATTGAGCTGCGTCGCACGGG 67
|||| || | ||||| | |||||||||||||||||||||||||||| || || |||||||
Sbjct 58 GCAATCG-ATCCTAATTTCGTCACTTCCCGATGATTTGATATTGAGTTGTGTGGCACGGG 116
Query 68 TCTCAAGATTGTATTATCCGGCTCTCTCCCTCGTCTCCAAGAGCTTTCGATCTCTCATAG 127
||||||||||||| |||||| ||||||| ||||||||||||||||||||||| ||| | |
Sbjct 117 TCTCAAGATTGTACTATCCGACTCTCTCTCTCGTCTCCAAGAGCTTTCGATCACTCCTGG 176
Query 128 CTTCACCGGAGCTTTACAAGACCCGATCACTCTTGG-ACCGCACGGAGAGTTGTCTCTAT 186
|||||||||||||||||||| | |||||||||||| || ||||||||||||||||||||
Sbjct 177 CTTCACCGGAGCTTTACAAGGCTAGATCACTCTTGGGAC-GCACGGAGAGTTGTCTCTAT 235
Score = 150 bits (81), Expect = 1e-35
Identities = 203/258 (79%), Gaps = 24/258 (9%)
Strand=Plus/Plus
Query 592 TGGTATCACAGTGAGGAAAGAGAGTGGAG-AGACTTGAAGGGTATGGT-AGGATTACCTA 649
|||||| ||| | ||| |||| |||||| || ||||||||| |||| | | ||||||
Sbjct 890 TGGTATGACACTAAGGTAAGATTGTGGAGCAG-GTTGAAGGGTTTGGTAAAG-CTACCTA 947
Query 650 AGTTCCCT-ATTGATGCTTGTCTTAGAA-TGGTTGATTATGGTGGGAAGATGGCAGTT-T 706
||||| || | |||||||||| ||| || ||| |||||||||||| ||||| || ||| |
Sbjct 948 AGTTCTCTCA-TGATGCTTGTATTA-AATTGGCTGATTATGGTGGAAAGATAGCGGTTCT 1005
Query 707 -TGTGG--GACGACT-AT-TTGCCT-G-GGCGCCGA-AAGAAGATGATTTGGTGTGCGGA 758
|| || || || | || || | | |||| | | ||||| | |||||||||||||||
Sbjct 1006 ATG-GGTCGATGAATCATCTT--ATAGTGGCGGCAAGAAGAATAAGATTTGGTGTGCGGA 1062
Query 759 GATTGCGCTTGAAAGACG-CGGAAGTT-TGGAAATATGGGGAAAAGTTGAATGGTTTGCT 816
|||||||||||||||||| | || || || |||| |||||| ||||||| ||||||| |
Sbjct 1063 GATTGCGCTTGAAAGACGACAAAA-TTGTG-AAATTTGGGGAGAAGTTGAGTGGTTTGGT 1120
Query 817 CATGTGCTTACAGTCCCT 834
||||||||||| || |||
Sbjct 1121 CATGTGCTTACCGTACCT 1138
> Ahg921494 jgi|Araly1|921494|scaffold_102775.1
Length=1283
Score = 191 bits (103), Expect = 8e-48
Identities = 141/160 (88%), Gaps = 0/160 (0%)
Strand=Plus/Plus
Query 27 GTCACTTCCCGATGATTTGATATTGAGCTGCGTCGCACGGGTCTCAAGATTGTATTATCC 86
|||||||||| |||||||| |||| | |||| | || ||||||||||| ||||| |||||
Sbjct 161 GTCACTTCCCTATGATTTGCTATTCAACTGCCTAGCCCGGGTCTCAAGGTTGTACTATCC 220
Query 87 GGCTCTCTCCCTCGTCTCCAAGAGCTTTCGATCTCTCATAGCTTCACCGGAGCTTTACAA 146
||||||||||||||||||||||||||||||||||| | |||||||| ||||||||||
Sbjct 221 CACTCTCTCCCTCGTCTCCAAGAGCTTTCGATCTCTCCTTGCTTCACCCGAGCTTTACAG 280
Query 147 GACCCGATCACTCTTGGACCGCACGGAGAGTTGTCTCTAT 186
| |||| |||||||||| |||||| |||||||||||||||
Sbjct 281 GGCCCGCTCACTCTTGGGCCGCACCGAGAGTTGTCTCTAT 320
Score = 150 bits (81), Expect = 1e-35
Identities = 517/716 (72%), Gaps = 76/716 (11%)
Strand=Plus/Plus
Query 202 TCTAACACGTGGCACGAGGGC-CCTAGGTTGCGGGTGAAGCTAATGTCATGTACTGCTTG 260
||| |||| |||||||| || ||| | |||| ||||| | | | ||| | ||||| |
Sbjct 582 TCTCACACATGGCACGA-TGCTCCTTGCTTGCAAATGAAGATGACGACATTTTCTGCTAG 640
Query 261 CGTTCTTGATGAAAAGATATATGTATCAGGAAGATGCAAAGATGG-----CG-ACTCC-A 313
||| |||||| |||||||||||||| ||||| | || || ||||| || | ||| |
Sbjct 641 CGTACTTGATCAAAAGATATATGTAGCAGGATGCTGTAAGGATGGCTATTCGAATTCCTA 700
Query 314 T--G-AC--GTTCCAAGTGTTTGACACAAATACACAAACTTGGGATCCTTTGTCTGTCCC 368
| | || | | | ||||| |||||||| ||||| |||||||||||| | | ||||
Sbjct 701 TAAGAACTTGATGGAGGTGTTCGACACAAAGACACAGACTTGGGATCCTAAGCCAATCCC 760
Query 369 TTGCAGCGAGACAAAACAC-GACTTTCACTACAA-AATCGTAAGGT-TTGACGGAAAATT 425
||||||||||||| | | |||| || ||| | | | | || |||||||||| ||
Sbjct 761 TTGCAGCGAGACATTTGGCGGCCTTT-TCTGCAACACT-G-CATGTCTTGACGGAAAGTT 817
Query 426 GCACCTGGTGAGCT-ACAAAGGTGTGGATGCTTACAATTCCAAGGAAGGTAGATGGGACC 484
||| | || | | || | | ||||| |||||||||||||||||||||||||||||||
Sbjct 818 CCACGTAATGCG-TGACGACGATGTGGTTGCTTACAATTCCAAGGAAGGTAGATGGGACA 876
Query 485 TG-GTT-ACAC-CAAGCATAGA-ACATAATAAGTATTTATATGATTGTTA-TCGCAATAT 539
| ||| | | || | || | | || || |||| | | || ||| | || | ||
Sbjct 877 -GAGTTGAAAAACA-G-ATTGGTAGGTA-TATTTATTCAAA--ATC-TTACT-GCGAGAT 928
Query 540 AGGGAATGTTTGGTACACTATT-G-TAAAAGGAGATATCTCAACGTCCGTATGGTGGTAT 597
| ||||||| |||| || | | | | ||| | || | || || | ||||||
Sbjct 929 ACATAATGTTTTGTACTCT-TGCGATCAC-GGA-A-AT---A---TC-GT-T--TGGTAT 974
Query 598 CACAGTGAGGAAAGAGAGTGGAGAGACTTGAAGGGTATGGTAGGATTACCTAAGTTCCCT 657
||| ||||| |||||| |||||||| ||||||||| |||||||| ||||| ||||||||
Sbjct 975 GACACTGAGGCAAGAGATTGGAGAGAGTTGAAGGGTTTGGTAGGACTACCTGAGTTCCCT 1034
Query 658 AT-TGATGCTT--GTCTTA-GAATGGTTGATTATGGTGGGAAGATGGCAGTTTTGTGGGA 713
| |||| | || || ||| |||||||||||| |||||||| |||||||||
Sbjct 1035 -TCTGATAAAAAAGGGATAAGATTGGCTGATTATGGTGGAAAGATGGCGGTTTTGTGGCT 1093
Query 714 CGACTATTTGCCTGGG--------CG-CCGAAAGAAGATGATTTGGTGTGCGGAGATTGC 764
||| | | |||| || || | |||||||||||||||||| |||||| |
Sbjct 1094 CGAGGAGTGGCCTTTTAATTTTTACGGCCTTACGAAGATGATTTGGTGTGCAGAGATTAC 1153
Query 765 GCTTGAAA-GACGCGGAAGTT-TGGAAATATGGGGAAAAGTTGAATGGTTTGCTCATGTG 822
|||||||| | ||| |||| || |||| ||||| |||||||| ||||||| |||| ||
Sbjct 1154 GCTTGAAAAG-CGCAAAAGTGGTG-AAATTTGGGGGAAAGTTGAGTGGTTTGATCATTTG 1211
Query 823 CTTAC-AGTCCCTAGACAATATGA-ATTCGTCAAGGTTCTTGCTGCTACTCTTTGA 876
||||| | |||||| || | ||| || | |||||||||||||||| ||| |||||
Sbjct 1212 CTTACTA-TCCCTA--CA-TGTGAGATAC-TCAAGGTTCTTGCTGCCACTGTTTGA 1262
> Ahg928901 jgi|Araly1|928901|scaffold_301358.1
Length=1293
Score = 182 bits (98), Expect = 5e-45
Identities = 156/183 (85%), Gaps = 8/183 (4%)
Strand=Plus/Plus
Query 8 CGCAAACGAACCCTAA-TCCGTCACTTCCCGATGATTTGATATTGAGC-TGCGTCGCACG 65
||||| ||| ||| || |||||||||||||||||||||| |||||| | | |||||||||
Sbjct 168 CGCAATCGAGCCC-AATTCCGTCACTTCCCGATGATTTGGTATTGAACAT-CGTCGCACG 225
Query 66 GGTCTCAAGATTGTATTATCCGGCTCTCTCCCTCGTCTCCAAGAGCTTTCGATCTCT-CA 124
||| |||||||||| ||||| |||| ||||||||||||||||||||||||||||| |
Sbjct 226 CGTCCCAAGATTGTACCATCCGACTCTATCCCTCGTCTCCAAGAGCTTTCGATCTCTGC- 284
Query 125 TAGCTTCACCGGAGCTTTACAAGACCCGATCACTCTT-GGACCGCACGGAGAGTTGTCTC 183
||||||||||||||||||||||| | | || ||| | ||| | || ||||||||||||
Sbjct 285 TAGCTTCACCGGAGCTTTACAAGGTCAGGTCTCTCATAGGAAAG-ACCGAGAGTTGTCTC 343
Query 184 TAT 186
|||
Sbjct 344 TAT 346
> Ahg317684 jgi|Araly1|317684|fgenesh1_pm.C_scaffold_3000700
Length=1047
Score = 58.4 bits (31), Expect = 9e-08
Identities = 35/37 (95%), Gaps = 0/37 (0%)
Strand=Plus/Plus
Query 446 GTGTGGATGCTTACAATTCCAAGGAAGGTAGATGGGA 482
||| || ||||||||||||||||||||||||||||||
Sbjct 614 GTGAGGTTGCTTACAATTCCAAGGAAGGTAGATGGGA 650
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32442602367
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5