BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G38690.1
Length=2224
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494100 jgi|Araly1|494100|fgenesh2_kg.7__3533__AT5G38690.1 1971 0.0
> Ahg494100 jgi|Araly1|494100|fgenesh2_kg.7__3533__AT5G38690.1
Length=2077
Score = 1971 bits (1067), Expect = 0.0
Identities = 1261/1354 (93%), Gaps = 15/1354 (1%)
Strand=Plus/Plus
Query 877 GAAGTTATCAAGAAAGTATTGGCAGAAGGAAAAAAGAAGAAGACTAC-AGCAAAAGGTAT 935
||||||| ||||||||||||||||||||||||||||||||||||||| | | |||| |||
Sbjct 732 GAAGTTACCAAGAAAGTATTGGCAGAAGGAAAAAAGAAGAAGACTACTA-CTAAAGATAT 790
Query 936 CAAGGAAAACAATGTAGCGGAGAAAATCAAAAGAATTAAACCTGCTCTCAAAAAGAAAGA 995
|||||||||||| |||| ||| |||||||||||||| |||||||||||||||||| || |
Sbjct 791 CAAGGAAAACAACGTAGTGGATAAAATCAAAAGAATCAAACCTGCTCTCAAAAAG-AA-A 848
Query 996 GGAGGATCAGGTTGAGATTAAAATACCTCAGGGCAATATCTCAATTACTGTTTCAGGCAT 1055
||||| | | |||| ||||| ||||||||||||||| |||||||||||| || |||||
Sbjct 849 -GAGGA--A-GATGAGGTTAAACTACCTCAGGGCAATAGCTCAATTACTGTATCTGGCAT 904
Query 1056 TGACTTGGCTCCTGAAGATGCTGGAAATGTATTTCAGTTTTTGGAGTTTTGTTCAGCTTT 1115
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 905 TGACTTGGCTCCTGAAGATGCTGGAAATGTATTTCAGTTTTTGGAGTTTTGTTCAGCTTT 964
Query 1116 TGGGAAGGCACTTGATTTGAGGAAAGGACAAGCTGAATGTGTTATACGCGAAATGTTATC 1175
||||||||||||||||||||||||||| ||||||||||||||||| || |||||||||||
Sbjct 965 TGGGAAGGCACTTGATTTGAGGAAAGGGCAAGCTGAATGTGTTATTCGTGAAATGTTATC 1024
Query 1176 TGGGAGAAGCAAAAGAAGACAACAATATTCCACTCTCACACAGATGATAATCCAACTACT 1235
|||||||||||||||||||||||||||||||| ||||| |||||||||||||| |||||
Sbjct 1025 CGGGAGAAGCAAAAGAAGACAACAATATTCCACACTCACCCAGATGATAATCCAGCTACT 1084
Query 1236 TACTGTGATATTAGAGGATAGAGGAGAAACATCCGTTTGCCTGAGTGCAACTGATCCTAG 1295
|||||||||||||||||||| |||||||||||| |||| |||||||||||||||| ||||
Sbjct 1085 TACTGTGATATTAGAGGATAAAGGAGAAACATCGGTTTTCCTGAGTGCAACTGATGCTAG 1144
Query 1296 TTGGTTCACTACGATTGGAGAATGTCTCTCGGAATCAGAAGTAAAGCTAGATGATTTCCC 1355
|||||||||||| |||||||||||||| |||||||||||||| ||||| |||||||||||
Sbjct 1145 TTGGTTCACTACAATTGGAGAATGTCTTTCGGAATCAGAAGTTAAGCTCGATGATTTCCC 1204
Query 1356 TCCTGAAATGTTTGAAAAAGGCATTTCTCAGTATGAGAAGTTGAATTCATCAAAAAGGCT 1415
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1205 TCCTGAAATGTTTGAAAAAGGCCTTTCTCAGTATGAGAAGTTGAATTCATCAAAAAGGCT 1264
Query 1416 TAAGCTTTTGAATTTCTTATGCGATGAAACGCTTGGCACATTGGTGATGAGGAATTGCAT 1475
|||||||||||||||| |||||||||||||||||||||||| ||||||||| ||||||||
Sbjct 1265 TAAGCTTTTGAATTTCCTATGCGATGAAACGCTTGGCACATCGGTGATGAGAAATTGCAT 1324
Query 1476 TGATAGCCAAAATATTGAATCTGTTgaaaggaaaaaagaagcaaaagaaaagatcaatgc 1535
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||
Sbjct 1325 TGATAGCCAAAATATTGAATCTGTTGAAAGGAAAAAGGAAGCAAAAGAAAAGATCATTGC 1384
Query 1536 tgcaaaagataaggagaaacagctgaagcagaaaTTGCAAGATGAGTTGGCTCAAGCCGT 1595
|||||||||||||||||||| || |||||||||||||||||||||||||||||||| ||
Sbjct 1385 AGCAAAAGATAAGGAGAAACAACTCAAGCAGAAATTGCAAGATGAGTTGGCTCAAGCAGT 1444
Query 1596 AAAAGCCAAAAACGGGATTCCATTGTTGATAACAGAACATGATGCGATTGTATCGCGGAT 1655
||||| |||||||| |||||||||||||||||||||| |||||| ||||||||||| ||
Sbjct 1445 AAAAGAGAAAAACGGAATTCCATTGTTGATAACAGAACGTGATGCAATTGTATCGCGAAT 1504
Query 1656 AAATGCAGAAACTCAAGAAGTTTATTCTGAAATGCAAAACGCAATAGACATGCTATCTAA 1715
|||||| |||||| |||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 1505 AAATGCTGAAACTAAAGAAGTTTATTCTGAAATGCAAAACGCAATAGACATGCTCTCCAA 1564
Query 1716 AAAGAGTCAAGGAAGTGATGATGCTGTTAGAACCAACCCGGTCGAATTGGATGACAATGG 1775
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1565 AAAGAGTCAAGGAAGTGATGATGCTGTTAGAACCAACCCGGTTGAATTGGATGACAATGG 1624
Query 1776 TCTTATATTCTGGAGATTGAAGTCTTACAATGATGAGCAAAACATTTTGCTTCAAGATTT 1835
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1625 TCTTATATTCTGGAGATTGAAGTCTTACAATGATGAGCCAAACATTTTGCTTCAAGATTT 1684
Query 1836 AGGAAGCTGGAATGAAGTATGTCCTCATGAAAAATGGTTTTCCTTCAGCTCTGAGCAAAA 1895
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1685 AGGAAGCTGGAATGAAGTATGTCCTCATGAAAAATGGTTTTCCTTCAACTCTGAGCAAAA 1744
Query 1896 ACCAGAGATAGAGAAATACATCTCTTTCATAAGGATGAAACGGGTTCAAGCACAAAAGAA 1955
|||||||||||||||||||||||||| |||||||||||||| | || ||||||||||||
Sbjct 1745 ACCAGAGATAGAGAAATACATCTCTTCCATAAGGATGAAACAGCTTGGAGCACAAAAGAA 1804
Query 1956 TGCAAGTACTATTATTACTTAGTGATGATGATTCTCTTTGGCCGCGAGCACATAAGAACA 2015
||||| |||||||||||||||| |||||||||||||||||| |||||||||||||||||
Sbjct 1805 TGCAAATACTATTATTACTTAGCAATGATGATTCTCTTTGGCTGCGAGCACATAAGAACA 1864
Query 2016 TGACTCTGATATGCAAAGAGGTAAAAGGCTGACTCAAAACTCTTTG----GTAATGT-GA 2070
||| ||||| | || ||||||||||||||||||||||||||||||| || || | ||
Sbjct 1865 TGATTCTGACAAGCGAAGAGGTAAAAGGCTGACTCAAAACTCTTTGACATGTGATTTTGA 1924
Query 2071 TTCGCATTGAGTATTGATTTATGAACAAACCAAAAAGCTCTGTTTGTAT-ACTAATGTTC 2129
||||||||||||||| ||||||||||| ||||||||||||||||| || | ||||||||
Sbjct 1925 ATCGCATTGAGTATTGCTTTATGAACAACCCAAAAAGCTCTGTTTGAATGA-TAATGTTC 1983
Query 2130 ATTCGGATTCTCGAAACTATGGAACGATCTTTGATAGTTTATCAGTTGTTTGTAAGTTTC 2189
|||||||||| | ||| |||| ||||||||||||||||| || |||||||| || |||||
Sbjct 1984 ATTCGGATTCCCTAAAGTATGAAACGATCTTTGATAGTTAATGAGTTGTTTTTATGTTTC 2043
Query 2190 AAGAATTTCTGAAAAGTGAACAAACAGATTCTAT 2223
||||||||||||||||||||||||||||||||||
Sbjct 2044 AAGAATTTCTGAAAAGTGAACAAACAGATTCTAT 2077
Score = 950 bits (514), Expect = 0.0
Identities = 587/623 (94%), Gaps = 2/623 (0%)
Strand=Plus/Plus
Query 252 TTTGGTTATGGCGGTGGTGAGTAAGAATCAGACCCAACAACAAACACCAAATCCTGGCGG 311
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 71 TTTGGTTATGGCGGTGGTGAGTAAGAATCAGACCCAACAACAAACACCAAATCCTGGCGG 130
Query 312 TGGTGTATCAAGGATCGAAGATTCCACCAACGGAAAGACTTGTCACCAATGTCGACAAAA 371
||||| |||||| |||||||||||||| | ||||||||||||||||| |||||||||||
Sbjct 131 TGGTGAATCAAGAATCGAAGATTCCACTATTGGAAAGACTTGTCACCAGTGTCGACAAAA 190
Query 372 GAGAACGGATCTTGTTGGATCCTGCGTGACCAAGAAGAAAGACAAGACTTGTCCTATTAA 431
||||||||||||||||||||||||||||||||||||||||||||| || ||||| |||||
Sbjct 191 GAGAACGGATCTTGTTGGATCCTGCGTGACCAAGAAGAAAGACAAAACATGTCCGATTAA 250
Query 432 GTTATGCACCAAGTGCATATTGAACAGGTATGGGGAGAACGCACAAGAGGTTGCGTTGAA 491
|||||| |||||||||||||||||||||||||| ||||| ||| ||||||||||||||||
Sbjct 251 GTTATGTACCAAGTGCATATTGAACAGGTATGGAGAGAATGCAGAAGAGGTTGCGTTGAA 310
Query 492 GAAGGATTGGATTTGTCCCAAGTGTAGAGGAAACTGCAACTGTAGCTACTGCATGAAGAA 551
||| |||||||||||||| |||||||||||||||||||| |||||||| |||||||||||
Sbjct 311 GAAAGATTGGATTTGTCCTAAGTGTAGAGGAAACTGCAATTGTAGCTATTGCATGAAGAA 370
Query 552 ACGAGGCCAAAAGCCTACCGGGATATTAGTACACACTGCTAAAAAGACTGGCTTCTCTTC 611
||||||||||||||||||||||||||||||||||||||| ||||| ||||| ||||||||
Sbjct 371 ACGAGGCCAAAAGCCTACCGGGATATTAGTACACACTGCAAAAAAAACTGGGTTCTCTTC 430
Query 612 TGTCTCAGAGCTTCTTAAAACTAGTGGTTCTGACAAATATTTTTATACAAAGAAGGTGAA 671
||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 431 TGTATCCGAGCTTCTTAAAACTAGTGGTTCTGACAAATATTTTTATACAAAGAAGGTGAA 490
Query 672 ACCGGAAGGTGTTGTTGTAG-TTTCACCACTGAAACTTGACCAGGAGAATTCTATTGAAC 730
||||||||||| |||||||| ||| |||||||||||||||||||||||| ||||||||||
Sbjct 491 ACCGGAAGGTGGTGTTGTAGCTTT-ACCACTGAAACTTGACCAGGAGAACTCTATTGAAC 549
Query 731 AAAAACATGTTAGTATTAAAAAATCGAGAAAAACTAAACGGGAAGAGCTCAAGGATATAA 790
||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||
Sbjct 550 AAAAACATGTTAGTATTAAAAAATCGAGAAAAACTAAACGGGAAGAGCTTAAGGATTTAA 609
Query 791 ACAACGGCTGCAGCAATGAGAATGTTGTGGTGAAAAAGAGTAATCCAAAGAAGATCAAGC 850
|||||||||| ||| ||||||||| ||||||||||||||| | |||||| |||||||||
Sbjct 610 ACAACGGCTGTAGCGATGAGAATGCTGTGGTGAAAAAGAGCAGTCCAAAAAAGATCAAGA 669
Query 851 TTTCTGATTCCGTTCATGCGACA 873
|||||||||| ||||||||||||
Sbjct 670 TTTCTGATTCTGTTCATGCGACA 692
Score = 108 bits (58), Expect = 2e-22
Identities = 69/74 (93%), Gaps = 2/74 (3%)
Strand=Plus/Plus
Query 156 CATAAAACTCGAGTCCAGTGATAAACAAAAACTCAGATACCCATAAACT-AATTTTCCGA 214
|||||||||||||||||||||||||| |||||||| ||||||||||||| | |||| |||
Sbjct 1 CATAAAACTCGAGTCCAGTGATAAAC-AAAACTCATATACCCATAAACTCATTTTTGCGA 59
Query 215 ATCAAATCAAtttt 228
||||||||||||||
Sbjct 60 ATCAAATCAATTTT 73
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 83722358510
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5