BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G38700.1
Length=806
Score E
Sequences producing significant alignments: (Bits) Value
Ahg918920 jgi|Araly1|918920|scaffold_100201.1 841 0.0
Ahg490355 jgi|Araly1|490355|fgenesh2_kg.6__3489__AT4G02170.1 159 2e-38
> Ahg918920 jgi|Araly1|918920|scaffold_100201.1
Length=588
Score = 841 bits (455), Expect = 0.0
Identities = 525/559 (94%), Gaps = 4/559 (1%)
Strand=Plus/Plus
Query 97 ATGGGGGAATCAAAGAAGAAAAGCAGATCAATGGCAACACAAAGAGCTTGGAGTCTTGTG 156
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 22 ATGGGGGAATCAAAGAAGAAAAGCAGATCAATGGCAACACAAAGAGCTTGGAGTCTTGTG 81
Query 157 AGAATGGCTCTTCTATGGGGAAGAAAAGGTGGAATCTTCAAGAGATGGCACATGTTTGAG 216
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 82 AGAATGGCTCTTCTATGGGGAAGAAAAGGTGGAATCTTCAAGAGATGGCACATGTTCGAG 141
Query 217 CTCCGTAACTTGTTCTCCAAGCATCTCAAAGCCCTAAATCATCATAACAGCGTTGACAAC 276
||||| |||||||| ||||||||||||| ||||||| ||||||||| ||| ||||||||
Sbjct 142 CTCCGCAACTTGTTTTCCAAGCATCTCAGAGCCCTAGCTCATCATAATAGCCTTGACAAC 201
Query 277 AACCGTTATCTCACACGTTACGGCGAGAAACAGCTTTCTTTCGACGAGACGCCAATATTT 336
|||||||| || |||||||||||||||||||||| ||||||||||||||||| || |||
Sbjct 202 GACCGTTATATCTCACGTTACGGCGAGAAACAGCTCTCTTTCGACGAGACGCCCATCTTT 261
Query 337 AACGTTAAAATGCATCGCCCTACATCCATGAGGTTCCTCTTGCCTTGCATTGCTCGTCCC 396
|||||||| |||||||| ||| ||||||||||||||||||||||||||||||||| ||||
Sbjct 262 AACGTTAAGATGCATCGTCCTGCATCCATGAGGTTCCTCTTGCCTTGCATTGCTCCTCCC 321
Query 397 GCTGACTTTGACTACGATTTCGAATTGGATGGTACTCAAGATGATACTGACGATGTTAGA 456
| ||||||||||||||| |||||||||||| || | |||||||||||||||||||||||
Sbjct 322 GTTGACTTTGACTACGACTTCGAATTGGATTGT-C--AAGATGATACTGACGATGTTAGA 378
Query 457 TCCTACGGCTACTACGATGGTTCTTGTAATGAGAAATGTGATCGTTCGGCGAATGATGAT 516
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 379 TCCTACGGCTACTACGATGGTTCTTGTAATGAGAAATGTGATCGTTCGGCTAATGATGAT 438
Query 517 CAAGAAGAGGAAGAAGAGAAGGGTGTTGATGTGAGAGCAGAGGAGTTCATTGCTAAGTTC 576
||||||| ||||| |||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 439 CAAGAAGTGGAAGGAGAGAAGGGTGTTGATGTGAGAGCAGAGGAGTTCATTGCTAAATTC 498
Query 577 TATGAGCAGATGAAGTTACAGAGGCAAATCTCTTATTTGCAATACAAAGAACACAACGAC 636
||||||||||||||||| ||||| ||||||||||||||||||||||| |||||||||||
Sbjct 499 TATGAGCAGATGAAGTTGCAGAGACAAATCTCTTATTTGCAATACAAGGAACACAACGAA 558
Query 637 GTCGTATGATGATTTATCA 655
|||||||||||| | ||||
Sbjct 559 GTCGTATGATGAGT-ATCA 576
> Ahg490355 jgi|Araly1|490355|fgenesh2_kg.6__3489__AT4G02170.1
Length=535
Score = 159 bits (86), Expect = 2e-38
Identities = 109/120 (91%), Gaps = 2/120 (2%)
Strand=Plus/Plus
Query 525 GGAAGAAGAG-AAGGGTGTTGATGTGAGAGCAGAGGAGTTCATTGCTAAGTTCTATGAGC 583
|||||||||| ||||| || ||||||||||| ||||||||||||||||||||||||||||
Sbjct 409 GGAAGAAGAGAAAGGG-GTGGATGTGAGAGCTGAGGAGTTCATTGCTAAGTTCTATGAGC 467
Query 584 AGATGAAGTTACAGAGGCAAATCTCTTATTTGCAATACAAAGAACACAACGACGTCGTAT 643
|||| ||||| ||||| ||| ||||||||||| |||||||| |||||||||||| |||||
Sbjct 468 AGATCAAGTTGCAGAGACAAGTCTCTTATTTGGAATACAAACAACACAACGACGCCGTAT 527
Score = 152 bits (82), Expect = 4e-36
Identities = 110/123 (89%), Gaps = 4/123 (3%)
Strand=Plus/Plus
Query 132 AACACA-AAGAGCTTGGAGTCTTGTGAGAATGGCTCTTCTATGGGGAAGAAAAGGTGGAA 190
|||||| || |||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 61 AACACATAA-AGCTTGGAGTCTCGTGAGGATGGCTCTTCTATGGGGAAGAAAAGGTGGAG 119
Query 191 TCTTCAAGAGATGGCACAT-GTTTGAGCTCCGTAACTTGTTCTCCAAGCATCTCAAAGCC 249
| ||||| ||||||| ||| ||| || || |||| |||||||||||||||||||||||||
Sbjct 120 TTTTCAAAAGATGGC-CATTGTTCGAACTACGTAGCTTGTTCTCCAAGCATCTCAAAGCC 178
Query 250 CTA 252
|||
Sbjct 179 CTA 181
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29773998177
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5